Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_1793 and Ga0059261_1794 overlap by 54 nucleotides Ga0059261_1794 and Ga0059261_1795 are separated by 134 nucleotides Ga0059261_1795 and Ga0059261_1796 are separated by 58 nucleotides
Ga0059261_1793: Ga0059261_1793 - Site-specific recombinases, DNA invertase Pin homologs, at 1,903,509 to 1,905,155
_1793
Ga0059261_1794: Ga0059261_1794 - tRNA, at 1,905,102 to 1,905,188
_1794
Ga0059261_1795: Ga0059261_1795 - Predicted nucleoside-diphosphate-sugar epimerases, at 1,905,323 to 1,906,255
_1795
Ga0059261_1796: Ga0059261_1796 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 1,906,314 to 1,907,114
_1796
Position (kb)
1905
1906
1907 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1904.395 kb on + strand at 1904.411 kb on - strand, within Ga0059261_1793 at 1905.297 kb on + strand at 1905.297 kb on + strand at 1905.297 kb on + strand at 1905.297 kb on + strand at 1905.297 kb on + strand at 1905.297 kb on + strand at 1905.297 kb on + strand at 1905.297 kb on + strand at 1905.298 kb on - strand at 1905.374 kb on + strand at 1905.374 kb on + strand at 1905.374 kb on + strand at 1905.375 kb on - strand at 1905.595 kb on + strand, within Ga0059261_1795 at 1905.695 kb on + strand, within Ga0059261_1795 at 1905.695 kb on + strand, within Ga0059261_1795 at 1905.696 kb on - strand, within Ga0059261_1795 at 1905.875 kb on + strand, within Ga0059261_1795 at 1905.875 kb on + strand, within Ga0059261_1795 at 1905.875 kb on + strand, within Ga0059261_1795 at 1905.875 kb on + strand, within Ga0059261_1795 at 1905.875 kb on + strand, within Ga0059261_1795 at 1905.900 kb on + strand, within Ga0059261_1795 at 1905.900 kb on + strand, within Ga0059261_1795 at 1906.211 kb on + strand at 1906.211 kb on + strand at 1906.211 kb on + strand at 1906.212 kb on - strand at 1907.196 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 1,904,395 + +1.7 1,904,411 - Ga0059261_1793 0.55 +2.1 1,905,297 + -0.7 1,905,297 + -2.4 1,905,297 + -0.9 1,905,297 + -0.7 1,905,297 + +0.0 1,905,297 + +0.1 1,905,297 + -0.6 1,905,297 + +0.2 1,905,298 - +0.1 1,905,374 + +0.1 1,905,374 + -1.4 1,905,374 + +0.1 1,905,375 - -0.5 1,905,595 + Ga0059261_1795 0.29 -1.4 1,905,695 + Ga0059261_1795 0.40 -0.4 1,905,695 + Ga0059261_1795 0.40 -0.4 1,905,696 - Ga0059261_1795 0.40 +0.4 1,905,875 + Ga0059261_1795 0.59 -3.3 1,905,875 + Ga0059261_1795 0.59 -0.6 1,905,875 + Ga0059261_1795 0.59 -0.1 1,905,875 + Ga0059261_1795 0.59 -0.3 1,905,875 + Ga0059261_1795 0.59 +0.4 1,905,900 + Ga0059261_1795 0.62 +1.1 1,905,900 + Ga0059261_1795 0.62 -0.3 1,906,211 + +1.0 1,906,211 + +1.1 1,906,211 + -1.0 1,906,212 - -2.3 1,907,196 - -0.2
Or see this region's nucleotide sequence