Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1499

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1498 and Ga0059261_1499 overlap by 8 nucleotidesGa0059261_1499 and Ga0059261_1500 overlap by 8 nucleotidesGa0059261_1500 and Ga0059261_1501 are separated by 29 nucleotides Ga0059261_1498: Ga0059261_1498 - Sulfite reductase, beta subunit (hemoprotein), at 1,582,167 to 1,583,798 _1498 Ga0059261_1499: Ga0059261_1499 - required for sulfate utilization, putative electron transport protein for sulfite reductase (from data), at 1,583,791 to 1,584,219 _1499 Ga0059261_1500: Ga0059261_1500 - phosphoadenylylsulfate reductase (thioredoxin) (EC 1.8.4.8), at 1,584,212 to 1,584,979 _1500 Ga0059261_1501: Ga0059261_1501 - hypothetical protein, at 1,585,009 to 1,585,677 _1501 Position (kb) 1583 1584 1585Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1582.848 kb on + strand, within Ga0059261_1498at 1582.848 kb on + strandat 1582.848 kb on + strand, within Ga0059261_1498at 1582.848 kb on + strand, within Ga0059261_1498at 1582.849 kb on - strand, within Ga0059261_1498at 1582.849 kb on - strand, within Ga0059261_1498at 1582.850 kb on + strandat 1582.850 kb on + strand, within Ga0059261_1498at 1582.872 kb on + strand, within Ga0059261_1498at 1582.872 kb on + strand, within Ga0059261_1498at 1582.898 kb on + strand, within Ga0059261_1498at 1582.898 kb on + strand, within Ga0059261_1498at 1582.898 kb on + strand, within Ga0059261_1498at 1582.898 kb on + strand, within Ga0059261_1498at 1582.899 kb on - strand, within Ga0059261_1498at 1582.899 kb on - strand, within Ga0059261_1498at 1582.899 kb on - strand, within Ga0059261_1498at 1582.899 kb on - strand, within Ga0059261_1498at 1582.899 kb on - strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.902 kb on + strand, within Ga0059261_1498at 1582.903 kb on - strand, within Ga0059261_1498at 1582.903 kb on - strand, within Ga0059261_1498at 1582.903 kb on - strand, within Ga0059261_1498at 1582.903 kb on - strand, within Ga0059261_1498at 1582.950 kb on + strand, within Ga0059261_1498at 1582.950 kb on + strand, within Ga0059261_1498at 1582.951 kb on - strand, within Ga0059261_1498at 1583.148 kb on + strand, within Ga0059261_1498at 1583.316 kb on + strand, within Ga0059261_1498at 1583.406 kb on + strand, within Ga0059261_1498at 1583.406 kb on + strand, within Ga0059261_1498at 1583.406 kb on + strand, within Ga0059261_1498at 1583.579 kb on + strand, within Ga0059261_1498at 1583.580 kb on - strand, within Ga0059261_1498at 1583.595 kb on + strand, within Ga0059261_1498at 1583.595 kb on + strandat 1583.596 kb on - strand, within Ga0059261_1498at 1583.709 kb on + strandat 1583.748 kb on - strandat 1583.748 kb on - strandat 1583.751 kb on + strandat 1583.752 kb on - strandat 1583.752 kb on - strandat 1583.752 kb on - strandat 1583.752 kb on - strandat 1583.790 kb on + strandat 1583.790 kb on + strandat 1583.790 kb on + strandat 1583.790 kb on + strandat 1583.791 kb on - strandat 1584.023 kb on - strand, within Ga0059261_1499at 1584.154 kb on + strand, within Ga0059261_1499at 1584.154 kb on + strand, within Ga0059261_1499at 1584.166 kb on + strand, within Ga0059261_1499at 1584.166 kb on + strand, within Ga0059261_1499at 1584.166 kb on + strand, within Ga0059261_1499at 1584.166 kb on + strand, within Ga0059261_1499at 1584.166 kb on + strand, within Ga0059261_1499at 1584.166 kb on + strand, within Ga0059261_1499at 1584.167 kb on - strand, within Ga0059261_1499at 1584.167 kb on - strand, within Ga0059261_1499at 1584.587 kb on + strand, within Ga0059261_1500at 1584.587 kb on + strand, within Ga0059261_1500at 1584.587 kb on + strand, within Ga0059261_1500at 1584.587 kb on + strand, within Ga0059261_1500at 1584.588 kb on - strand, within Ga0059261_1500at 1584.588 kb on - strand, within Ga0059261_1500at 1584.588 kb on - strand, within Ga0059261_1500at 1584.588 kb on - strand, within Ga0059261_1500at 1584.785 kb on + strand, within Ga0059261_1500at 1584.786 kb on - strand, within Ga0059261_1500at 1584.786 kb on - strandat 1584.786 kb on - strand, within Ga0059261_1500at 1584.833 kb on + strand, within Ga0059261_1500at 1584.833 kb on + strand, within Ga0059261_1500at 1584.833 kb on + strand, within Ga0059261_1500at 1584.833 kb on + strand, within Ga0059261_1500at 1584.834 kb on - strand, within Ga0059261_1500at 1585.190 kb on - strand, within Ga0059261_1501

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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1,582,848 + Ga0059261_1498 0.42 -0.5
1,582,848 + -1.3
1,582,848 + Ga0059261_1498 0.42 -1.4
1,582,848 + Ga0059261_1498 0.42 -0.4
1,582,849 - Ga0059261_1498 0.42 +0.3
1,582,849 - Ga0059261_1498 0.42 -0.3
1,582,850 + +0.3
1,582,850 + Ga0059261_1498 0.42 +1.0
1,582,872 + Ga0059261_1498 0.43 -0.7
1,582,872 + Ga0059261_1498 0.43 -0.3
1,582,898 + Ga0059261_1498 0.45 -0.6
1,582,898 + Ga0059261_1498 0.45 -0.8
1,582,898 + Ga0059261_1498 0.45 -0.4
1,582,898 + Ga0059261_1498 0.45 +0.8
1,582,899 - Ga0059261_1498 0.45 -0.2
1,582,899 - Ga0059261_1498 0.45 +0.3
1,582,899 - Ga0059261_1498 0.45 +0.6
1,582,899 - Ga0059261_1498 0.45 -0.7
1,582,899 - Ga0059261_1498 0.45 -0.8
1,582,902 + Ga0059261_1498 0.45 -0.0
1,582,902 + Ga0059261_1498 0.45 -0.4
1,582,902 + Ga0059261_1498 0.45 -0.1
1,582,902 + Ga0059261_1498 0.45 -1.5
1,582,902 + Ga0059261_1498 0.45 +0.4
1,582,902 + Ga0059261_1498 0.45 -0.8
1,582,902 + Ga0059261_1498 0.45 +3.3
1,582,902 + Ga0059261_1498 0.45 +0.0
1,582,902 + Ga0059261_1498 0.45 -1.1
1,582,903 - Ga0059261_1498 0.45 +0.0
1,582,903 - Ga0059261_1498 0.45 -0.6
1,582,903 - Ga0059261_1498 0.45 +1.0
1,582,903 - Ga0059261_1498 0.45 +0.4
1,582,950 + Ga0059261_1498 0.48 -0.8
1,582,950 + Ga0059261_1498 0.48 -0.6
1,582,951 - Ga0059261_1498 0.48 +1.5
1,583,148 + Ga0059261_1498 0.60 -0.1
1,583,316 + Ga0059261_1498 0.70 -0.6
1,583,406 + Ga0059261_1498 0.76 -0.4
1,583,406 + Ga0059261_1498 0.76 -1.2
1,583,406 + Ga0059261_1498 0.76 -0.2
1,583,579 + Ga0059261_1498 0.87 -0.4
1,583,580 - Ga0059261_1498 0.87 -0.4
1,583,595 + Ga0059261_1498 0.88 -0.0
1,583,595 + +1.0
1,583,596 - Ga0059261_1498 0.88 +0.2
1,583,709 + -0.9
1,583,748 - -0.9
1,583,748 - +0.8
1,583,751 + -0.3
1,583,752 - +1.0
1,583,752 - +0.0
1,583,752 - +0.4
1,583,752 - -1.0
1,583,790 + +0.4
1,583,790 + -0.1
1,583,790 + -0.6
1,583,790 + -0.4
1,583,791 - +0.0
1,584,023 - Ga0059261_1499 0.54 -0.7
1,584,154 + Ga0059261_1499 0.85 -0.7
1,584,154 + Ga0059261_1499 0.85 -1.0
1,584,166 + Ga0059261_1499 0.87 -0.6
1,584,166 + Ga0059261_1499 0.87 -2.3
1,584,166 + Ga0059261_1499 0.87 -0.4
1,584,166 + Ga0059261_1499 0.87 +0.1
1,584,166 + Ga0059261_1499 0.87 +0.5
1,584,166 + Ga0059261_1499 0.87 +1.0
1,584,167 - Ga0059261_1499 0.88 -0.7
1,584,167 - Ga0059261_1499 0.88 -0.1
1,584,587 + Ga0059261_1500 0.49 +0.5
1,584,587 + Ga0059261_1500 0.49 +1.0
1,584,587 + Ga0059261_1500 0.49 +0.0
1,584,587 + Ga0059261_1500 0.49 -0.8
1,584,588 - Ga0059261_1500 0.49 -0.7
1,584,588 - Ga0059261_1500 0.49 -0.6
1,584,588 - Ga0059261_1500 0.49 +0.4
1,584,588 - Ga0059261_1500 0.49 -1.1
1,584,785 + Ga0059261_1500 0.75 -0.9
1,584,786 - Ga0059261_1500 0.75 -1.6
1,584,786 - -0.6
1,584,786 - Ga0059261_1500 0.75 -1.8
1,584,833 + Ga0059261_1500 0.81 +0.2
1,584,833 + Ga0059261_1500 0.81 -0.4
1,584,833 + Ga0059261_1500 0.81 -0.3
1,584,833 + Ga0059261_1500 0.81 -0.8
1,584,834 - Ga0059261_1500 0.81 +1.0
1,585,190 - Ga0059261_1501 0.27 -0.7

Or see this region's nucleotide sequence