Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1299

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1298 and Ga0059261_1299 overlap by 4 nucleotidesGa0059261_1299 and Ga0059261_1300 are separated by 63 nucleotidesGa0059261_1300 and Ga0059261_1301 are separated by 213 nucleotides Ga0059261_1298: Ga0059261_1298 - Glycosyltransferases involved in cell wall biogenesis, at 1,364,533 to 1,365,648 _1298 Ga0059261_1299: Ga0059261_1299 - D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family, at 1,365,645 to 1,367,084 _1299 Ga0059261_1300: Ga0059261_1300 - hypothetical protein, at 1,367,148 to 1,367,465 _1300 Ga0059261_1301: Ga0059261_1301 - Methyltransferase domain, at 1,367,679 to 1,368,410 _1301 Position (kb) 1365 1366 1367 1368Strain fitness (log2 ratio) -2 -1 0 1 2at 1365.873 kb on + strand, within Ga0059261_1299at 1365.873 kb on + strand, within Ga0059261_1299at 1365.873 kb on + strand, within Ga0059261_1299at 1365.873 kb on + strand, within Ga0059261_1299at 1365.873 kb on + strand, within Ga0059261_1299at 1365.873 kb on + strand, within Ga0059261_1299at 1365.873 kb on + strand, within Ga0059261_1299at 1365.874 kb on - strand, within Ga0059261_1299at 1365.874 kb on - strand, within Ga0059261_1299at 1365.874 kb on - strand, within Ga0059261_1299at 1365.874 kb on - strand, within Ga0059261_1299at 1365.874 kb on - strand, within Ga0059261_1299at 1365.874 kb on - strand, within Ga0059261_1299at 1365.874 kb on - strand, within Ga0059261_1299at 1365.875 kb on + strand, within Ga0059261_1299at 1365.875 kb on + strand, within Ga0059261_1299at 1365.875 kb on + strandat 1365.875 kb on + strand, within Ga0059261_1299at 1365.875 kb on + strand, within Ga0059261_1299at 1365.875 kb on + strand, within Ga0059261_1299at 1365.875 kb on + strand, within Ga0059261_1299at 1365.876 kb on - strand, within Ga0059261_1299at 1365.876 kb on - strand, within Ga0059261_1299at 1365.876 kb on - strand, within Ga0059261_1299at 1365.876 kb on - strand, within Ga0059261_1299at 1365.876 kb on - strand, within Ga0059261_1299at 1365.876 kb on - strand, within Ga0059261_1299at 1365.876 kb on - strand, within Ga0059261_1299at 1365.876 kb on - strand, within Ga0059261_1299at 1365.876 kb on - strand, within Ga0059261_1299at 1365.876 kb on - strand, within Ga0059261_1299at 1366.134 kb on + strand, within Ga0059261_1299at 1366.135 kb on - strand, within Ga0059261_1299at 1366.236 kb on + strand, within Ga0059261_1299at 1366.236 kb on + strand, within Ga0059261_1299at 1366.319 kb on + strand, within Ga0059261_1299at 1366.319 kb on + strandat 1366.320 kb on - strand, within Ga0059261_1299at 1366.320 kb on - strand, within Ga0059261_1299at 1366.322 kb on + strand, within Ga0059261_1299at 1366.322 kb on + strand, within Ga0059261_1299at 1366.322 kb on + strand, within Ga0059261_1299at 1366.323 kb on - strand, within Ga0059261_1299at 1366.323 kb on - strand, within Ga0059261_1299at 1366.355 kb on + strand, within Ga0059261_1299at 1366.356 kb on - strand, within Ga0059261_1299at 1366.398 kb on + strand, within Ga0059261_1299at 1366.398 kb on + strand, within Ga0059261_1299at 1366.398 kb on + strand, within Ga0059261_1299at 1366.399 kb on - strand, within Ga0059261_1299at 1366.399 kb on - strand, within Ga0059261_1299at 1366.470 kb on + strand, within Ga0059261_1299at 1366.520 kb on - strand, within Ga0059261_1299at 1366.520 kb on - strand, within Ga0059261_1299at 1366.764 kb on + strand, within Ga0059261_1299at 1366.765 kb on - strand, within Ga0059261_1299at 1366.765 kb on - strand, within Ga0059261_1299at 1366.765 kb on - strand, within Ga0059261_1299at 1366.765 kb on - strand, within Ga0059261_1299at 1366.765 kb on - strand, within Ga0059261_1299at 1366.962 kb on + strandat 1366.963 kb on - strandat 1366.963 kb on - strandat 1367.004 kb on + strandat 1367.004 kb on + strandat 1367.005 kb on - strandat 1367.005 kb on - strandat 1367.062 kb on + strandat 1367.063 kb on - strandat 1367.142 kb on - strandat 1367.164 kb on + strandat 1367.164 kb on + strandat 1367.165 kb on - strandat 1367.187 kb on + strand, within Ga0059261_1300at 1367.187 kb on + strand, within Ga0059261_1300at 1367.187 kb on + strand, within Ga0059261_1300at 1367.256 kb on - strand, within Ga0059261_1300at 1367.288 kb on + strand, within Ga0059261_1300at 1367.288 kb on + strand, within Ga0059261_1300at 1367.289 kb on - strand, within Ga0059261_1300at 1367.305 kb on + strand, within Ga0059261_1300at 1367.466 kb on - strandat 1367.535 kb on + strandat 1367.585 kb on + strandat 1367.614 kb on - strandat 1367.614 kb on - strandat 1367.619 kb on - strandat 1367.620 kb on + strandat 1367.620 kb on + strandat 1367.620 kb on + strandat 1367.621 kb on - strandat 1367.623 kb on + strandat 1367.623 kb on + strandat 1367.947 kb on + strandat 1367.947 kb on + strand, within Ga0059261_1301at 1367.947 kb on + strand, within Ga0059261_1301at 1367.948 kb on - strand, within Ga0059261_1301at 1368.080 kb on + strand, within Ga0059261_1301

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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1,365,873 + Ga0059261_1299 0.16 -0.1
1,365,873 + Ga0059261_1299 0.16 -1.0
1,365,873 + Ga0059261_1299 0.16 +0.6
1,365,873 + Ga0059261_1299 0.16 -0.5
1,365,873 + Ga0059261_1299 0.16 +0.6
1,365,873 + Ga0059261_1299 0.16 -0.3
1,365,873 + Ga0059261_1299 0.16 -0.5
1,365,874 - Ga0059261_1299 0.16 +0.6
1,365,874 - Ga0059261_1299 0.16 -1.8
1,365,874 - Ga0059261_1299 0.16 +0.0
1,365,874 - Ga0059261_1299 0.16 -0.6
1,365,874 - Ga0059261_1299 0.16 +0.2
1,365,874 - Ga0059261_1299 0.16 -0.8
1,365,874 - Ga0059261_1299 0.16 -0.2
1,365,875 + Ga0059261_1299 0.16 +0.6
1,365,875 + Ga0059261_1299 0.16 -1.0
1,365,875 + -1.3
1,365,875 + Ga0059261_1299 0.16 -0.4
1,365,875 + Ga0059261_1299 0.16 +0.5
1,365,875 + Ga0059261_1299 0.16 -1.1
1,365,875 + Ga0059261_1299 0.16 -1.0
1,365,876 - Ga0059261_1299 0.16 -0.6
1,365,876 - Ga0059261_1299 0.16 -0.4
1,365,876 - Ga0059261_1299 0.16 +0.1
1,365,876 - Ga0059261_1299 0.16 -1.4
1,365,876 - Ga0059261_1299 0.16 -0.3
1,365,876 - Ga0059261_1299 0.16 -0.5
1,365,876 - Ga0059261_1299 0.16 +0.3
1,365,876 - Ga0059261_1299 0.16 -1.4
1,365,876 - Ga0059261_1299 0.16 -0.4
1,365,876 - Ga0059261_1299 0.16 -0.4
1,366,134 + Ga0059261_1299 0.34 +0.1
1,366,135 - Ga0059261_1299 0.34 -0.3
1,366,236 + Ga0059261_1299 0.41 +0.2
1,366,236 + Ga0059261_1299 0.41 -0.1
1,366,319 + Ga0059261_1299 0.47 +0.8
1,366,319 + +0.0
1,366,320 - Ga0059261_1299 0.47 -2.4
1,366,320 - Ga0059261_1299 0.47 -0.5
1,366,322 + Ga0059261_1299 0.47 +0.3
1,366,322 + Ga0059261_1299 0.47 +0.9
1,366,322 + Ga0059261_1299 0.47 -0.4
1,366,323 - Ga0059261_1299 0.47 +1.0
1,366,323 - Ga0059261_1299 0.47 +0.2
1,366,355 + Ga0059261_1299 0.49 -0.2
1,366,356 - Ga0059261_1299 0.49 -0.8
1,366,398 + Ga0059261_1299 0.52 +0.3
1,366,398 + Ga0059261_1299 0.52 +0.6
1,366,398 + Ga0059261_1299 0.52 +1.0
1,366,399 - Ga0059261_1299 0.52 -0.2
1,366,399 - Ga0059261_1299 0.52 +0.3
1,366,470 + Ga0059261_1299 0.57 -0.6
1,366,520 - Ga0059261_1299 0.61 +0.0
1,366,520 - Ga0059261_1299 0.61 +0.2
1,366,764 + Ga0059261_1299 0.78 -1.9
1,366,765 - Ga0059261_1299 0.78 +0.2
1,366,765 - Ga0059261_1299 0.78 +0.0
1,366,765 - Ga0059261_1299 0.78 -0.6
1,366,765 - Ga0059261_1299 0.78 +0.4
1,366,765 - Ga0059261_1299 0.78 +0.5
1,366,962 + +0.1
1,366,963 - +0.6
1,366,963 - -1.5
1,367,004 + -0.7
1,367,004 + -0.3
1,367,005 - +0.7
1,367,005 - +0.3
1,367,062 + +0.5
1,367,063 - +0.8
1,367,142 - -0.5
1,367,164 + +1.0
1,367,164 + +0.0
1,367,165 - -2.5
1,367,187 + Ga0059261_1300 0.12 +0.6
1,367,187 + Ga0059261_1300 0.12 +0.0
1,367,187 + Ga0059261_1300 0.12 -0.0
1,367,256 - Ga0059261_1300 0.34 +0.4
1,367,288 + Ga0059261_1300 0.44 -0.8
1,367,288 + Ga0059261_1300 0.44 -0.3
1,367,289 - Ga0059261_1300 0.44 -1.0
1,367,305 + Ga0059261_1300 0.49 +0.9
1,367,466 - -0.1
1,367,535 + +0.4
1,367,585 + +0.9
1,367,614 - -0.0
1,367,614 - +0.4
1,367,619 - +0.3
1,367,620 + +1.3
1,367,620 + +0.6
1,367,620 + -0.4
1,367,621 - -0.2
1,367,623 + -0.1
1,367,623 + -0.5
1,367,947 + +0.5
1,367,947 + Ga0059261_1301 0.37 +0.0
1,367,947 + Ga0059261_1301 0.37 +1.8
1,367,948 - Ga0059261_1301 0.37 +0.6
1,368,080 + Ga0059261_1301 0.55 +0.4

Or see this region's nucleotide sequence