Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0993

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0991 and Ga0059261_0992 overlap by 4 nucleotidesGa0059261_0992 and Ga0059261_0993 overlap by 4 nucleotidesGa0059261_0993 and Ga0059261_0994 are separated by 129 nucleotides Ga0059261_0991: Ga0059261_0991 - Methionine synthase I (cobalamin-dependent), methyltransferase domain, at 1,028,212 to 1,029,258 _0991 Ga0059261_0992: Ga0059261_0992 - 5,10-methylenetetrahydrofolate reductase, prokaryotic form, at 1,029,255 to 1,030,172 _0992 Ga0059261_0993: Ga0059261_0993 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 1,030,169 to 1,031,128 _0993 Ga0059261_0994: Ga0059261_0994 - Glycosyltransferase, at 1,031,258 to 1,032,280 _0994 Position (kb) 1030 1031 1032Strain fitness (log2 ratio) -2 -1 0 1at 1029.316 kb on + strandat 1029.316 kb on + strandat 1029.317 kb on - strandat 1029.317 kb on - strandat 1029.343 kb on + strandat 1029.343 kb on + strandat 1029.344 kb on - strandat 1029.344 kb on - strandat 1029.344 kb on - strandat 1029.373 kb on + strand, within Ga0059261_0992at 1029.374 kb on - strand, within Ga0059261_0992at 1029.374 kb on - strand, within Ga0059261_0992at 1029.781 kb on + strand, within Ga0059261_0992at 1029.781 kb on + strand, within Ga0059261_0992at 1029.781 kb on + strandat 1029.781 kb on + strand, within Ga0059261_0992at 1029.868 kb on + strand, within Ga0059261_0992at 1029.869 kb on - strand, within Ga0059261_0992at 1029.869 kb on - strand, within Ga0059261_0992at 1029.957 kb on - strand, within Ga0059261_0992at 1030.006 kb on + strand, within Ga0059261_0992at 1030.006 kb on + strand, within Ga0059261_0992at 1030.006 kb on + strand, within Ga0059261_0992at 1030.510 kb on - strand, within Ga0059261_0993at 1030.688 kb on - strand, within Ga0059261_0993at 1031.134 kb on + strandat 1031.140 kb on + strandat 1031.141 kb on - strandat 1031.141 kb on - strandat 1031.141 kb on - strandat 1031.142 kb on + strandat 1031.142 kb on + strandat 1031.142 kb on + strandat 1031.143 kb on - strandat 1031.143 kb on - strandat 1031.143 kb on - strandat 1031.149 kb on - strandat 1031.154 kb on + strandat 1031.154 kb on + strandat 1031.154 kb on + strandat 1031.155 kb on - strandat 1031.241 kb on + strandat 1031.241 kb on + strandat 1031.241 kb on + strandat 1031.242 kb on - strandat 1031.242 kb on - strandat 1031.242 kb on - strandat 1031.242 kb on - strandat 1031.329 kb on + strandat 1031.329 kb on + strandat 1031.330 kb on - strandat 1031.330 kb on - strandat 1031.457 kb on + strand, within Ga0059261_0994at 1031.512 kb on + strand, within Ga0059261_0994at 1031.513 kb on - strand, within Ga0059261_0994at 1031.513 kb on - strand, within Ga0059261_0994at 1031.513 kb on - strand, within Ga0059261_0994at 1031.553 kb on + strand, within Ga0059261_0994at 1031.554 kb on - strand, within Ga0059261_0994at 1031.554 kb on - strand, within Ga0059261_0994at 1031.554 kb on - strand, within Ga0059261_0994at 1031.607 kb on + strand, within Ga0059261_0994at 1031.721 kb on + strand, within Ga0059261_0994at 1031.721 kb on + strand, within Ga0059261_0994at 1031.721 kb on + strand, within Ga0059261_0994at 1031.721 kb on + strand, within Ga0059261_0994at 1031.721 kb on + strand, within Ga0059261_0994at 1031.721 kb on + strand, within Ga0059261_0994at 1031.721 kb on + strand, within Ga0059261_0994at 1031.721 kb on + strand, within Ga0059261_0994at 1031.721 kb on + strand, within Ga0059261_0994at 1031.721 kb on + strand, within Ga0059261_0994at 1031.722 kb on - strand, within Ga0059261_0994at 1031.722 kb on - strand, within Ga0059261_0994at 1031.722 kb on - strand, within Ga0059261_0994at 1031.722 kb on - strand, within Ga0059261_0994at 1031.722 kb on - strand, within Ga0059261_0994at 1031.905 kb on + strand, within Ga0059261_0994at 1031.906 kb on - strand, within Ga0059261_0994at 1031.907 kb on + strand, within Ga0059261_0994at 1031.908 kb on - strand, within Ga0059261_0994at 1031.908 kb on - strand, within Ga0059261_0994at 1031.908 kb on - strand, within Ga0059261_0994at 1031.908 kb on - strand, within Ga0059261_0994at 1031.908 kb on - strand, within Ga0059261_0994at 1031.952 kb on + strand, within Ga0059261_0994at 1031.952 kb on + strand, within Ga0059261_0994at 1031.953 kb on - strand, within Ga0059261_0994at 1031.953 kb on - strand, within Ga0059261_0994at 1031.953 kb on - strand, within Ga0059261_0994at 1031.953 kb on - strand, within Ga0059261_0994at 1031.973 kb on + strand, within Ga0059261_0994at 1031.973 kb on + strand, within Ga0059261_0994

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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1,029,316 + -0.5
1,029,316 + -0.4
1,029,317 - -0.3
1,029,317 - -0.0
1,029,343 + -0.0
1,029,343 + -0.3
1,029,344 - -1.0
1,029,344 - -1.5
1,029,344 - -0.6
1,029,373 + Ga0059261_0992 0.13 -0.5
1,029,374 - Ga0059261_0992 0.13 -0.8
1,029,374 - Ga0059261_0992 0.13 +0.0
1,029,781 + Ga0059261_0992 0.57 +0.5
1,029,781 + Ga0059261_0992 0.57 +0.4
1,029,781 + -0.3
1,029,781 + Ga0059261_0992 0.57 +0.4
1,029,868 + Ga0059261_0992 0.67 +0.2
1,029,869 - Ga0059261_0992 0.67 +0.5
1,029,869 - Ga0059261_0992 0.67 +1.0
1,029,957 - Ga0059261_0992 0.76 -0.1
1,030,006 + Ga0059261_0992 0.82 -2.5
1,030,006 + Ga0059261_0992 0.82 +0.3
1,030,006 + Ga0059261_0992 0.82 +0.1
1,030,510 - Ga0059261_0993 0.36 -1.0
1,030,688 - Ga0059261_0993 0.54 -0.7
1,031,134 + +1.3
1,031,140 + -0.2
1,031,141 - +0.8
1,031,141 - -0.3
1,031,141 - +0.2
1,031,142 + -1.3
1,031,142 + -0.5
1,031,142 + -0.1
1,031,143 - +0.2
1,031,143 - +0.8
1,031,143 - +0.2
1,031,149 - +0.4
1,031,154 + -1.5
1,031,154 + -0.1
1,031,154 + -0.4
1,031,155 - +0.2
1,031,241 + -0.1
1,031,241 + -0.5
1,031,241 + +0.1
1,031,242 - -0.1
1,031,242 - -1.0
1,031,242 - -0.2
1,031,242 - -1.5
1,031,329 + -0.5
1,031,329 + +0.2
1,031,330 - +0.3
1,031,330 - +0.6
1,031,457 + Ga0059261_0994 0.19 -0.5
1,031,512 + Ga0059261_0994 0.25 +0.0
1,031,513 - Ga0059261_0994 0.25 -0.1
1,031,513 - Ga0059261_0994 0.25 +0.4
1,031,513 - Ga0059261_0994 0.25 -0.1
1,031,553 + Ga0059261_0994 0.29 +1.0
1,031,554 - Ga0059261_0994 0.29 -0.5
1,031,554 - Ga0059261_0994 0.29 +0.7
1,031,554 - Ga0059261_0994 0.29 +0.0
1,031,607 + Ga0059261_0994 0.34 -0.3
1,031,721 + Ga0059261_0994 0.45 -0.4
1,031,721 + Ga0059261_0994 0.45 -0.2
1,031,721 + Ga0059261_0994 0.45 -0.3
1,031,721 + Ga0059261_0994 0.45 -0.2
1,031,721 + Ga0059261_0994 0.45 +0.6
1,031,721 + Ga0059261_0994 0.45 +0.3
1,031,721 + Ga0059261_0994 0.45 -1.1
1,031,721 + Ga0059261_0994 0.45 +0.5
1,031,721 + Ga0059261_0994 0.45 -1.1
1,031,721 + Ga0059261_0994 0.45 -0.3
1,031,722 - Ga0059261_0994 0.45 -0.5
1,031,722 - Ga0059261_0994 0.45 -0.3
1,031,722 - Ga0059261_0994 0.45 -0.6
1,031,722 - Ga0059261_0994 0.45 +0.8
1,031,722 - Ga0059261_0994 0.45 -0.2
1,031,905 + Ga0059261_0994 0.63 -0.8
1,031,906 - Ga0059261_0994 0.63 +0.2
1,031,907 + Ga0059261_0994 0.63 -0.6
1,031,908 - Ga0059261_0994 0.64 -0.5
1,031,908 - Ga0059261_0994 0.64 +0.2
1,031,908 - Ga0059261_0994 0.64 -0.3
1,031,908 - Ga0059261_0994 0.64 -0.5
1,031,908 - Ga0059261_0994 0.64 +0.1
1,031,952 + Ga0059261_0994 0.68 +0.2
1,031,952 + Ga0059261_0994 0.68 -0.3
1,031,953 - Ga0059261_0994 0.68 +0.1
1,031,953 - Ga0059261_0994 0.68 +0.5
1,031,953 - Ga0059261_0994 0.68 +0.6
1,031,953 - Ga0059261_0994 0.68 -1.2
1,031,973 + Ga0059261_0994 0.70 -0.9
1,031,973 + Ga0059261_0994 0.70 -0.3

Or see this region's nucleotide sequence