Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0864 and Ga0059261_0865 are separated by 174 nucleotides Ga0059261_0865 and Ga0059261_0866 are separated by 17 nucleotides Ga0059261_0866 and Ga0059261_0867 overlap by 4 nucleotides Ga0059261_0867 and Ga0059261_0868 are separated by 89 nucleotides
Ga0059261_0864: Ga0059261_0864 - hypothetical protein, at 905,222 to 905,617
_0864
Ga0059261_0865: Ga0059261_0865 - RNA, at 905,792 to 905,873
_0865
Ga0059261_0866: Ga0059261_0866 - Putative threonine efflux protein, at 905,891 to 906,523
_0866
Ga0059261_0867: Ga0059261_0867 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 906,520 to 907,314
_0867
Ga0059261_0868: Ga0059261_0868 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 907,404 to 908,945
_0868
Position (kb) 906
907
908 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 905.568 kb on + strand, within Ga0059261_0864 at 905.576 kb on - strand, within Ga0059261_0864 at 905.653 kb on + strand at 905.654 kb on - strand at 905.654 kb on - strand at 905.717 kb on + strand at 905.723 kb on + strand at 905.746 kb on + strand at 905.747 kb on - strand at 905.782 kb on + strand at 905.783 kb on - strand at 905.969 kb on + strand, within Ga0059261_0866 at 905.969 kb on + strand, within Ga0059261_0866 at 905.969 kb on + strand, within Ga0059261_0866 at 905.969 kb on + strand, within Ga0059261_0866 at 905.970 kb on - strand, within Ga0059261_0866 at 905.970 kb on - strand, within Ga0059261_0866 at 905.970 kb on - strand at 905.970 kb on - strand, within Ga0059261_0866 at 905.970 kb on - strand, within Ga0059261_0866 at 906.050 kb on + strand, within Ga0059261_0866 at 906.050 kb on + strand, within Ga0059261_0866 at 906.050 kb on + strand, within Ga0059261_0866 at 906.051 kb on - strand, within Ga0059261_0866 at 906.051 kb on - strand, within Ga0059261_0866 at 906.051 kb on - strand, within Ga0059261_0866 at 906.051 kb on - strand, within Ga0059261_0866 at 906.051 kb on - strand, within Ga0059261_0866 at 906.068 kb on + strand, within Ga0059261_0866 at 906.068 kb on + strand, within Ga0059261_0866 at 906.068 kb on + strand, within Ga0059261_0866 at 906.068 kb on + strand, within Ga0059261_0866 at 906.069 kb on - strand, within Ga0059261_0866 at 906.107 kb on + strand, within Ga0059261_0866 at 906.107 kb on + strand, within Ga0059261_0866 at 906.138 kb on - strand, within Ga0059261_0866 at 906.281 kb on + strand, within Ga0059261_0866 at 906.282 kb on - strand, within Ga0059261_0866 at 906.282 kb on - strand, within Ga0059261_0866 at 906.282 kb on - strand, within Ga0059261_0866 at 906.521 kb on + strand at 906.752 kb on + strand, within Ga0059261_0867 at 906.753 kb on - strand, within Ga0059261_0867 at 906.845 kb on + strand, within Ga0059261_0867 at 906.845 kb on + strand, within Ga0059261_0867 at 906.845 kb on + strand, within Ga0059261_0867 at 906.978 kb on - strand, within Ga0059261_0867 at 906.978 kb on - strand, within Ga0059261_0867 at 906.978 kb on - strand, within Ga0059261_0867 at 906.978 kb on - strand at 907.202 kb on + strand, within Ga0059261_0867 at 907.202 kb on + strand, within Ga0059261_0867 at 907.202 kb on + strand, within Ga0059261_0867 at 907.202 kb on + strand, within Ga0059261_0867 at 907.202 kb on + strand, within Ga0059261_0867 at 907.203 kb on - strand, within Ga0059261_0867 at 907.203 kb on - strand, within Ga0059261_0867 at 907.203 kb on - strand, within Ga0059261_0867 at 907.203 kb on - strand, within Ga0059261_0867 at 907.203 kb on - strand, within Ga0059261_0867 at 907.203 kb on - strand, within Ga0059261_0867 at 907.203 kb on - strand, within Ga0059261_0867 at 907.203 kb on - strand, within Ga0059261_0867 at 907.203 kb on - strand, within Ga0059261_0867 at 907.203 kb on - strand, within Ga0059261_0867 at 907.376 kb on - strand at 907.524 kb on + strand at 907.524 kb on + strand at 907.524 kb on + strand at 907.525 kb on - strand at 907.525 kb on - strand at 907.525 kb on - strand at 907.525 kb on - strand at 907.525 kb on - strand at 907.629 kb on + strand, within Ga0059261_0868 at 907.630 kb on - strand, within Ga0059261_0868 at 907.911 kb on + strand, within Ga0059261_0868 at 907.911 kb on + strand, within Ga0059261_0868 at 907.911 kb on + strand, within Ga0059261_0868 at 907.911 kb on + strand, within Ga0059261_0868 at 907.912 kb on - strand, within Ga0059261_0868 at 907.912 kb on - strand, within Ga0059261_0868 at 907.912 kb on - strand, within Ga0059261_0868 at 907.912 kb on - strand, within Ga0059261_0868 at 907.976 kb on + strand, within Ga0059261_0868 at 907.977 kb on - strand, within Ga0059261_0868 at 908.182 kb on - strand, within Ga0059261_0868 at 908.182 kb on - strand, within Ga0059261_0868
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 905,568 + Ga0059261_0864 0.87 +1.0 905,576 - Ga0059261_0864 0.89 +0.2 905,653 + -0.9 905,654 - +0.1 905,654 - +0.3 905,717 + -0.1 905,723 + +0.5 905,746 + -0.2 905,747 - -0.5 905,782 + -0.9 905,783 - +0.6 905,969 + Ga0059261_0866 0.12 -0.1 905,969 + Ga0059261_0866 0.12 +0.2 905,969 + Ga0059261_0866 0.12 -0.2 905,969 + Ga0059261_0866 0.12 -1.9 905,970 - Ga0059261_0866 0.12 +0.5 905,970 - Ga0059261_0866 0.12 -0.6 905,970 - +1.6 905,970 - Ga0059261_0866 0.12 +0.4 905,970 - Ga0059261_0866 0.12 +0.2 906,050 + Ga0059261_0866 0.25 -0.0 906,050 + Ga0059261_0866 0.25 +0.2 906,050 + Ga0059261_0866 0.25 -0.7 906,051 - Ga0059261_0866 0.25 -0.2 906,051 - Ga0059261_0866 0.25 -0.0 906,051 - Ga0059261_0866 0.25 -0.1 906,051 - Ga0059261_0866 0.25 -0.4 906,051 - Ga0059261_0866 0.25 -0.2 906,068 + Ga0059261_0866 0.28 -0.6 906,068 + Ga0059261_0866 0.28 -0.7 906,068 + Ga0059261_0866 0.28 +0.4 906,068 + Ga0059261_0866 0.28 -0.1 906,069 - Ga0059261_0866 0.28 -0.1 906,107 + Ga0059261_0866 0.34 +0.5 906,107 + Ga0059261_0866 0.34 -1.0 906,138 - Ga0059261_0866 0.39 +0.7 906,281 + Ga0059261_0866 0.62 +1.2 906,282 - Ga0059261_0866 0.62 +0.2 906,282 - Ga0059261_0866 0.62 +0.1 906,282 - Ga0059261_0866 0.62 +0.6 906,521 + -0.9 906,752 + Ga0059261_0867 0.29 -2.1 906,753 - Ga0059261_0867 0.29 +0.0 906,845 + Ga0059261_0867 0.41 +0.4 906,845 + Ga0059261_0867 0.41 -0.0 906,845 + Ga0059261_0867 0.41 +0.9 906,978 - Ga0059261_0867 0.58 +0.2 906,978 - Ga0059261_0867 0.58 -0.8 906,978 - Ga0059261_0867 0.58 +0.5 906,978 - +0.0 907,202 + Ga0059261_0867 0.86 +0.8 907,202 + Ga0059261_0867 0.86 +0.7 907,202 + Ga0059261_0867 0.86 +1.0 907,202 + Ga0059261_0867 0.86 -0.0 907,202 + Ga0059261_0867 0.86 +0.7 907,203 - Ga0059261_0867 0.86 -0.4 907,203 - Ga0059261_0867 0.86 +0.1 907,203 - Ga0059261_0867 0.86 -0.4 907,203 - Ga0059261_0867 0.86 -0.7 907,203 - Ga0059261_0867 0.86 -0.2 907,203 - Ga0059261_0867 0.86 +1.0 907,203 - Ga0059261_0867 0.86 +0.8 907,203 - Ga0059261_0867 0.86 -1.3 907,203 - Ga0059261_0867 0.86 -0.5 907,203 - Ga0059261_0867 0.86 +1.2 907,376 - -0.1 907,524 + -0.5 907,524 + -1.7 907,524 + -1.1 907,525 - -0.4 907,525 - -1.2 907,525 - +1.0 907,525 - +0.2 907,525 - +0.6 907,629 + Ga0059261_0868 0.15 +0.4 907,630 - Ga0059261_0868 0.15 -0.1 907,911 + Ga0059261_0868 0.33 -0.0 907,911 + Ga0059261_0868 0.33 -0.2 907,911 + Ga0059261_0868 0.33 +0.2 907,911 + Ga0059261_0868 0.33 -0.3 907,912 - Ga0059261_0868 0.33 +3.0 907,912 - Ga0059261_0868 0.33 +0.4 907,912 - Ga0059261_0868 0.33 -0.6 907,912 - Ga0059261_0868 0.33 -0.2 907,976 + Ga0059261_0868 0.37 -0.3 907,977 - Ga0059261_0868 0.37 +1.0 908,182 - Ga0059261_0868 0.50 -0.2 908,182 - Ga0059261_0868 0.50 -0.0
Or see this region's nucleotide sequence