Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0849

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0848 and Ga0059261_0849 overlap by 23 nucleotidesGa0059261_0849 and Ga0059261_0850 overlap by 16 nucleotidesGa0059261_0850 and Ga0059261_0851 are separated by 8 nucleotides Ga0059261_0848: Ga0059261_0848 - transcriptional regulator, TetR family, at 888,904 to 890,148 _0848 Ga0059261_0849: Ga0059261_0849 - transcriptional regulator, TetR family, at 890,126 to 890,854 _0849 Ga0059261_0850: Ga0059261_0850 - hypothetical protein, at 890,839 to 891,246 _0850 Ga0059261_0851: Ga0059261_0851 - Alpha/beta hydrolase family, at 891,255 to 892,214 _0851 Position (kb) 890 891Strain fitness (log2 ratio) -2 -1 0 1 2at 889.199 kb on - strandat 889.199 kb on - strand, within Ga0059261_0848at 889.387 kb on + strand, within Ga0059261_0848at 889.387 kb on + strand, within Ga0059261_0848at 889.450 kb on + strand, within Ga0059261_0848at 889.451 kb on - strand, within Ga0059261_0848at 889.680 kb on + strand, within Ga0059261_0848at 889.680 kb on + strand, within Ga0059261_0848at 889.680 kb on + strand, within Ga0059261_0848at 889.680 kb on + strand, within Ga0059261_0848at 889.681 kb on - strand, within Ga0059261_0848at 889.681 kb on - strand, within Ga0059261_0848at 889.681 kb on - strand, within Ga0059261_0848at 889.687 kb on + strand, within Ga0059261_0848at 889.687 kb on + strand, within Ga0059261_0848at 889.687 kb on + strand, within Ga0059261_0848at 889.687 kb on + strand, within Ga0059261_0848at 889.687 kb on + strand, within Ga0059261_0848at 889.688 kb on - strand, within Ga0059261_0848at 889.688 kb on - strand, within Ga0059261_0848at 889.688 kb on - strand, within Ga0059261_0848at 889.688 kb on - strandat 889.729 kb on + strand, within Ga0059261_0848at 889.729 kb on + strand, within Ga0059261_0848at 889.730 kb on - strand, within Ga0059261_0848at 889.730 kb on - strand, within Ga0059261_0848at 889.730 kb on - strand, within Ga0059261_0848at 889.730 kb on - strand, within Ga0059261_0848at 889.943 kb on - strandat 890.095 kb on + strandat 890.095 kb on + strandat 890.096 kb on - strandat 890.111 kb on + strandat 890.111 kb on + strandat 890.112 kb on - strandat 890.112 kb on - strandat 890.291 kb on + strand, within Ga0059261_0849at 890.291 kb on + strand, within Ga0059261_0849at 890.291 kb on + strand, within Ga0059261_0849at 890.292 kb on - strand, within Ga0059261_0849at 890.292 kb on - strand, within Ga0059261_0849at 890.292 kb on - strand, within Ga0059261_0849at 890.292 kb on - strand, within Ga0059261_0849at 890.293 kb on + strand, within Ga0059261_0849at 890.294 kb on - strand, within Ga0059261_0849at 890.405 kb on + strand, within Ga0059261_0849at 890.405 kb on + strand, within Ga0059261_0849at 890.406 kb on - strand, within Ga0059261_0849at 890.406 kb on - strand, within Ga0059261_0849at 890.830 kb on + strandat 890.830 kb on + strandat 890.830 kb on + strandat 890.830 kb on + strandat 890.830 kb on + strandat 890.830 kb on + strandat 890.830 kb on + strandat 890.830 kb on + strandat 890.830 kb on + strandat 890.831 kb on - strandat 890.831 kb on - strandat 890.831 kb on - strandat 891.046 kb on - strand, within Ga0059261_0850at 891.046 kb on - strand, within Ga0059261_0850at 891.057 kb on + strand, within Ga0059261_0850at 891.388 kb on + strand, within Ga0059261_0851at 891.388 kb on + strand, within Ga0059261_0851at 891.389 kb on - strand, within Ga0059261_0851at 891.389 kb on - strand, within Ga0059261_0851at 891.394 kb on + strand, within Ga0059261_0851at 891.394 kb on + strand, within Ga0059261_0851at 891.394 kb on + strand, within Ga0059261_0851at 891.394 kb on + strand, within Ga0059261_0851at 891.394 kb on + strand, within Ga0059261_0851at 891.394 kb on + strand, within Ga0059261_0851at 891.394 kb on + strand, within Ga0059261_0851at 891.395 kb on - strand, within Ga0059261_0851at 891.395 kb on - strand, within Ga0059261_0851at 891.395 kb on - strand, within Ga0059261_0851at 891.520 kb on + strand, within Ga0059261_0851at 891.520 kb on + strand, within Ga0059261_0851at 891.520 kb on + strand, within Ga0059261_0851at 891.520 kb on + strand, within Ga0059261_0851at 891.521 kb on - strand, within Ga0059261_0851at 891.521 kb on - strand, within Ga0059261_0851at 891.524 kb on - strand, within Ga0059261_0851at 891.524 kb on - strand, within Ga0059261_0851at 891.524 kb on - strand, within Ga0059261_0851at 891.554 kb on + strand, within Ga0059261_0851at 891.554 kb on + strand, within Ga0059261_0851at 891.555 kb on - strand, within Ga0059261_0851at 891.601 kb on + strand, within Ga0059261_0851at 891.799 kb on + strand, within Ga0059261_0851at 891.799 kb on + strand, within Ga0059261_0851at 891.799 kb on + strand, within Ga0059261_0851at 891.799 kb on + strand, within Ga0059261_0851at 891.799 kb on + strand, within Ga0059261_0851at 891.799 kb on + strand, within Ga0059261_0851at 891.799 kb on + strand, within Ga0059261_0851at 891.800 kb on - strand, within Ga0059261_0851at 891.800 kb on - strand, within Ga0059261_0851

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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889,199 - +0.5
889,199 - Ga0059261_0848 0.24 +0.3
889,387 + Ga0059261_0848 0.39 +0.6
889,387 + Ga0059261_0848 0.39 -0.2
889,450 + Ga0059261_0848 0.44 -0.2
889,451 - Ga0059261_0848 0.44 +1.9
889,680 + Ga0059261_0848 0.62 -0.3
889,680 + Ga0059261_0848 0.62 -1.5
889,680 + Ga0059261_0848 0.62 -1.3
889,680 + Ga0059261_0848 0.62 +0.5
889,681 - Ga0059261_0848 0.62 +0.1
889,681 - Ga0059261_0848 0.62 +0.2
889,681 - Ga0059261_0848 0.62 +0.0
889,687 + Ga0059261_0848 0.63 +1.0
889,687 + Ga0059261_0848 0.63 +0.5
889,687 + Ga0059261_0848 0.63 -0.2
889,687 + Ga0059261_0848 0.63 -0.5
889,687 + Ga0059261_0848 0.63 -0.5
889,688 - Ga0059261_0848 0.63 +2.3
889,688 - Ga0059261_0848 0.63 -0.3
889,688 - Ga0059261_0848 0.63 +0.1
889,688 - +0.3
889,729 + Ga0059261_0848 0.66 +0.7
889,729 + Ga0059261_0848 0.66 -1.0
889,730 - Ga0059261_0848 0.66 +0.5
889,730 - Ga0059261_0848 0.66 +0.6
889,730 - Ga0059261_0848 0.66 -1.3
889,730 - Ga0059261_0848 0.66 +0.2
889,943 - +1.0
890,095 + -0.5
890,095 + -0.1
890,096 - -0.2
890,111 + -0.4
890,111 + +1.0
890,112 - -1.7
890,112 - +0.5
890,291 + Ga0059261_0849 0.23 +0.9
890,291 + Ga0059261_0849 0.23 -0.1
890,291 + Ga0059261_0849 0.23 -0.0
890,292 - Ga0059261_0849 0.23 +1.0
890,292 - Ga0059261_0849 0.23 +0.8
890,292 - Ga0059261_0849 0.23 +0.0
890,292 - Ga0059261_0849 0.23 -0.1
890,293 + Ga0059261_0849 0.23 -0.7
890,294 - Ga0059261_0849 0.23 +0.8
890,405 + Ga0059261_0849 0.38 -0.1
890,405 + Ga0059261_0849 0.38 +0.0
890,406 - Ga0059261_0849 0.38 -0.5
890,406 - Ga0059261_0849 0.38 +0.9
890,830 + +0.4
890,830 + -0.4
890,830 + -0.4
890,830 + +0.9
890,830 + -0.2
890,830 + -0.6
890,830 + -0.9
890,830 + +1.0
890,830 + +0.0
890,831 - +0.1
890,831 - +0.3
890,831 - +1.0
891,046 - Ga0059261_0850 0.51 -0.4
891,046 - Ga0059261_0850 0.51 -0.0
891,057 + Ga0059261_0850 0.53 +1.1
891,388 + Ga0059261_0851 0.14 +0.1
891,388 + Ga0059261_0851 0.14 -0.1
891,389 - Ga0059261_0851 0.14 +0.4
891,389 - Ga0059261_0851 0.14 -0.1
891,394 + Ga0059261_0851 0.14 -0.5
891,394 + Ga0059261_0851 0.14 +0.0
891,394 + Ga0059261_0851 0.14 +0.8
891,394 + Ga0059261_0851 0.14 -0.6
891,394 + Ga0059261_0851 0.14 +0.8
891,394 + Ga0059261_0851 0.14 +0.5
891,394 + Ga0059261_0851 0.14 -0.3
891,395 - Ga0059261_0851 0.15 +0.1
891,395 - Ga0059261_0851 0.15 -0.1
891,395 - Ga0059261_0851 0.15 -0.2
891,520 + Ga0059261_0851 0.28 -0.5
891,520 + Ga0059261_0851 0.28 -1.8
891,520 + Ga0059261_0851 0.28 +0.0
891,520 + Ga0059261_0851 0.28 +0.4
891,521 - Ga0059261_0851 0.28 -0.1
891,521 - Ga0059261_0851 0.28 +0.3
891,524 - Ga0059261_0851 0.28 +0.9
891,524 - Ga0059261_0851 0.28 -0.6
891,524 - Ga0059261_0851 0.28 -0.2
891,554 + Ga0059261_0851 0.31 +0.0
891,554 + Ga0059261_0851 0.31 +0.0
891,555 - Ga0059261_0851 0.31 +0.5
891,601 + Ga0059261_0851 0.36 -2.2
891,799 + Ga0059261_0851 0.57 -0.7
891,799 + Ga0059261_0851 0.57 -0.4
891,799 + Ga0059261_0851 0.57 -0.5
891,799 + Ga0059261_0851 0.57 -0.3
891,799 + Ga0059261_0851 0.57 +0.1
891,799 + Ga0059261_0851 0.57 -1.0
891,799 + Ga0059261_0851 0.57 -2.3
891,800 - Ga0059261_0851 0.57 -0.4
891,800 - Ga0059261_0851 0.57 -0.7

Or see this region's nucleotide sequence