Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0735 and Ga0059261_0736 overlap by 4 nucleotides Ga0059261_0736 and Ga0059261_0737 overlap by 4 nucleotides Ga0059261_0737 and Ga0059261_0738 are separated by 46 nucleotides Ga0059261_0738 and Ga0059261_0739 are separated by 83 nucleotides
Ga0059261_0735: Ga0059261_0735 - 5,10-methenyltetrahydrofolate synthetase, at 765,061 to 765,612
_0735
Ga0059261_0736: Ga0059261_0736 - Protein of unknown function (DUF2842), at 765,609 to 765,839
_0736
Ga0059261_0737: Ga0059261_0737 - PRC-barrel domain, at 765,836 to 766,198
_0737
Ga0059261_0738: Ga0059261_0738 - Predicted transcriptional regulators, at 766,245 to 767,048
_0738
Ga0059261_0739: Ga0059261_0739 - Aminopeptidase N, at 767,132 to 768,982
_0739
Position (kb) 766
767
768 Strain fitness (log2 ratio) -2
-1
0
1
2 at 765.460 kb on + strand, within Ga0059261_0735 at 765.461 kb on - strand, within Ga0059261_0735 at 765.471 kb on - strand, within Ga0059261_0735 at 765.620 kb on + strand at 765.621 kb on - strand at 765.747 kb on + strand, within Ga0059261_0736 at 765.755 kb on + strand, within Ga0059261_0736 at 765.756 kb on - strand, within Ga0059261_0736 at 765.756 kb on - strand, within Ga0059261_0736 at 765.756 kb on - strand, within Ga0059261_0736 at 765.837 kb on + strand at 765.837 kb on + strand at 765.837 kb on + strand at 765.838 kb on - strand at 765.838 kb on - strand at 765.838 kb on - strand at 765.843 kb on + strand at 765.843 kb on + strand at 765.843 kb on + strand at 765.843 kb on + strand at 765.843 kb on + strand at 765.844 kb on - strand at 765.844 kb on - strand at 765.844 kb on - strand at 765.855 kb on + strand at 765.855 kb on + strand at 765.855 kb on + strand at 765.855 kb on + strand at 765.855 kb on + strand at 765.856 kb on - strand at 765.858 kb on + strand at 765.858 kb on + strand at 765.858 kb on + strand at 765.858 kb on + strand at 765.858 kb on + strand at 765.858 kb on + strand at 765.859 kb on - strand at 765.859 kb on - strand at 765.859 kb on - strand at 765.859 kb on - strand at 765.859 kb on - strand at 765.862 kb on + strand at 765.862 kb on + strand at 765.862 kb on + strand at 765.862 kb on + strand at 765.862 kb on + strand at 765.862 kb on + strand at 765.862 kb on + strand at 765.862 kb on + strand at 765.862 kb on + strand at 765.862 kb on + strand at 765.863 kb on - strand at 765.863 kb on - strand at 765.863 kb on - strand at 765.863 kb on - strand at 765.863 kb on - strand at 765.864 kb on + strand at 765.864 kb on + strand at 765.864 kb on + strand at 765.864 kb on + strand at 765.864 kb on + strand at 765.864 kb on + strand at 765.864 kb on + strand at 765.864 kb on + strand at 765.864 kb on + strand at 765.864 kb on + strand at 765.864 kb on + strand at 765.864 kb on + strand at 765.865 kb on - strand at 765.865 kb on - strand at 765.865 kb on - strand at 765.879 kb on + strand, within Ga0059261_0737 at 765.891 kb on + strand, within Ga0059261_0737 at 765.891 kb on + strand, within Ga0059261_0737 at 765.892 kb on - strand at 765.892 kb on - strand, within Ga0059261_0737 at 765.918 kb on + strand, within Ga0059261_0737 at 765.918 kb on + strand, within Ga0059261_0737 at 765.918 kb on + strand, within Ga0059261_0737 at 765.918 kb on + strand, within Ga0059261_0737 at 765.918 kb on + strand, within Ga0059261_0737 at 765.919 kb on - strand, within Ga0059261_0737 at 765.964 kb on - strand, within Ga0059261_0737 at 765.964 kb on - strand, within Ga0059261_0737 at 766.011 kb on + strand, within Ga0059261_0737 at 766.059 kb on + strand, within Ga0059261_0737 at 766.059 kb on + strand, within Ga0059261_0737 at 766.059 kb on + strand, within Ga0059261_0737 at 766.059 kb on + strand, within Ga0059261_0737 at 766.060 kb on - strand, within Ga0059261_0737 at 766.081 kb on + strand, within Ga0059261_0737 at 766.082 kb on - strand, within Ga0059261_0737 at 766.082 kb on - strand, within Ga0059261_0737 at 766.190 kb on - strand at 766.212 kb on - strand at 766.241 kb on - strand at 766.285 kb on + strand at 766.285 kb on + strand at 766.285 kb on + strand at 766.285 kb on + strand at 766.285 kb on + strand at 766.285 kb on + strand at 766.286 kb on - strand at 766.286 kb on - strand at 766.286 kb on - strand at 766.286 kb on - strand at 766.286 kb on - strand at 766.529 kb on + strand, within Ga0059261_0738 at 766.549 kb on + strand, within Ga0059261_0738 at 766.549 kb on + strand, within Ga0059261_0738 at 766.549 kb on + strand, within Ga0059261_0738 at 766.549 kb on + strand, within Ga0059261_0738 at 766.550 kb on - strand, within Ga0059261_0738 at 766.550 kb on - strand, within Ga0059261_0738 at 766.550 kb on - strand, within Ga0059261_0738 at 766.550 kb on - strand, within Ga0059261_0738 at 766.665 kb on - strand, within Ga0059261_0738 at 766.665 kb on - strand, within Ga0059261_0738 at 767.118 kb on + strand at 767.119 kb on - strand at 767.119 kb on - strand at 767.137 kb on + strand at 767.137 kb on + strand at 767.137 kb on + strand at 767.138 kb on - strand at 767.138 kb on - strand at 767.138 kb on - strand at 767.540 kb on - strand, within Ga0059261_0739 at 767.670 kb on + strand, within Ga0059261_0739 at 767.783 kb on + strand, within Ga0059261_0739 at 767.783 kb on + strand, within Ga0059261_0739 at 767.784 kb on - strand, within Ga0059261_0739 at 767.784 kb on - strand, within Ga0059261_0739 at 767.784 kb on - strand, within Ga0059261_0739 at 767.784 kb on - strand, within Ga0059261_0739 at 767.907 kb on + strand at 767.907 kb on + strand, within Ga0059261_0739 at 767.907 kb on + strand, within Ga0059261_0739 at 767.907 kb on + strand, within Ga0059261_0739 at 767.907 kb on + strand, within Ga0059261_0739 at 767.908 kb on - strand, within Ga0059261_0739 at 767.908 kb on - strand, within Ga0059261_0739 at 767.908 kb on - strand, within Ga0059261_0739 at 767.908 kb on - strand, within Ga0059261_0739 at 767.908 kb on - strand, within Ga0059261_0739 at 767.927 kb on + strand, within Ga0059261_0739 at 767.951 kb on + strand, within Ga0059261_0739 at 767.984 kb on + strand, within Ga0059261_0739
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 765,460 + Ga0059261_0735 0.72 +0.1 765,461 - Ga0059261_0735 0.72 -0.4 765,471 - Ga0059261_0735 0.74 -1.1 765,620 + +0.2 765,621 - -0.8 765,747 + Ga0059261_0736 0.60 +0.3 765,755 + Ga0059261_0736 0.63 -0.6 765,756 - Ga0059261_0736 0.64 -0.6 765,756 - Ga0059261_0736 0.64 -1.1 765,756 - Ga0059261_0736 0.64 -0.6 765,837 + +0.5 765,837 + -0.4 765,837 + -0.6 765,838 - +0.3 765,838 - +0.1 765,838 - +0.5 765,843 + +0.6 765,843 + -0.2 765,843 + -0.4 765,843 + -0.2 765,843 + -2.5 765,844 - -0.9 765,844 - +0.9 765,844 - -0.5 765,855 + -1.7 765,855 + +0.4 765,855 + +0.3 765,855 + -0.1 765,855 + +0.3 765,856 - -0.3 765,858 + -0.2 765,858 + +1.1 765,858 + -0.0 765,858 + +0.6 765,858 + -0.2 765,858 + -0.2 765,859 - +0.1 765,859 - +1.9 765,859 - -1.1 765,859 - +0.1 765,859 - -0.6 765,862 + +0.1 765,862 + +0.7 765,862 + -0.1 765,862 + -1.1 765,862 + +0.3 765,862 + -0.1 765,862 + -0.4 765,862 + -0.5 765,862 + +0.8 765,862 + +1.5 765,863 - -1.3 765,863 - +0.5 765,863 - -0.9 765,863 - +0.4 765,863 - +0.3 765,864 + +0.2 765,864 + +0.6 765,864 + +0.2 765,864 + -0.1 765,864 + +0.7 765,864 + +0.6 765,864 + +0.2 765,864 + -0.3 765,864 + +1.1 765,864 + +0.9 765,864 + -1.6 765,864 + +0.6 765,865 - +0.1 765,865 - +0.2 765,865 - +0.5 765,879 + Ga0059261_0737 0.12 +0.3 765,891 + Ga0059261_0737 0.15 +0.9 765,891 + Ga0059261_0737 0.15 +0.1 765,892 - +2.1 765,892 - Ga0059261_0737 0.15 +0.1 765,918 + Ga0059261_0737 0.23 -0.5 765,918 + Ga0059261_0737 0.23 -0.1 765,918 + Ga0059261_0737 0.23 +0.3 765,918 + Ga0059261_0737 0.23 -0.9 765,918 + Ga0059261_0737 0.23 -0.4 765,919 - Ga0059261_0737 0.23 +0.6 765,964 - Ga0059261_0737 0.35 -0.3 765,964 - Ga0059261_0737 0.35 +0.1 766,011 + Ga0059261_0737 0.48 -0.3 766,059 + Ga0059261_0737 0.61 +0.1 766,059 + Ga0059261_0737 0.61 +0.3 766,059 + Ga0059261_0737 0.61 +0.3 766,059 + Ga0059261_0737 0.61 -0.1 766,060 - Ga0059261_0737 0.62 +0.4 766,081 + Ga0059261_0737 0.67 -0.2 766,082 - Ga0059261_0737 0.68 -0.5 766,082 - Ga0059261_0737 0.68 -0.5 766,190 - -0.2 766,212 - +0.3 766,241 - +0.4 766,285 + -0.3 766,285 + +0.1 766,285 + -0.5 766,285 + -0.2 766,285 + +0.2 766,285 + -0.9 766,286 - +0.2 766,286 - -0.2 766,286 - -0.0 766,286 - +0.1 766,286 - -2.2 766,529 + Ga0059261_0738 0.35 +0.3 766,549 + Ga0059261_0738 0.38 +0.4 766,549 + Ga0059261_0738 0.38 +0.0 766,549 + Ga0059261_0738 0.38 -0.3 766,549 + Ga0059261_0738 0.38 +0.6 766,550 - Ga0059261_0738 0.38 -0.1 766,550 - Ga0059261_0738 0.38 -0.1 766,550 - Ga0059261_0738 0.38 +1.1 766,550 - Ga0059261_0738 0.38 +0.5 766,665 - Ga0059261_0738 0.52 -0.5 766,665 - Ga0059261_0738 0.52 +0.3 767,118 + +0.0 767,119 - -0.4 767,119 - +0.5 767,137 + -0.3 767,137 + +0.5 767,137 + -0.2 767,138 - -2.1 767,138 - -0.6 767,138 - +0.4 767,540 - Ga0059261_0739 0.22 +0.4 767,670 + Ga0059261_0739 0.29 +0.1 767,783 + Ga0059261_0739 0.35 -0.5 767,783 + Ga0059261_0739 0.35 +1.5 767,784 - Ga0059261_0739 0.35 -0.7 767,784 - Ga0059261_0739 0.35 +1.4 767,784 - Ga0059261_0739 0.35 -0.2 767,784 - Ga0059261_0739 0.35 +0.2 767,907 + -1.0 767,907 + Ga0059261_0739 0.42 -0.0 767,907 + Ga0059261_0739 0.42 -0.3 767,907 + Ga0059261_0739 0.42 -0.2 767,907 + Ga0059261_0739 0.42 +0.9 767,908 - Ga0059261_0739 0.42 +0.0 767,908 - Ga0059261_0739 0.42 -0.0 767,908 - Ga0059261_0739 0.42 +0.8 767,908 - Ga0059261_0739 0.42 -0.6 767,908 - Ga0059261_0739 0.42 -0.1 767,927 + Ga0059261_0739 0.43 -0.1 767,951 + Ga0059261_0739 0.44 +0.6 767,984 + Ga0059261_0739 0.46 +0.3
Or see this region's nucleotide sequence