Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0660 and Ga0059261_0661 are separated by 16 nucleotides Ga0059261_0661 and Ga0059261_0662 are separated by 89 nucleotides Ga0059261_0662 and Ga0059261_0663 overlap by 4 nucleotides Ga0059261_0663 and Ga0059261_0664 are separated by 120 nucleotides
Ga0059261_0660: Ga0059261_0660 - Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein), at 700,339 to 701,100
_0660
Ga0059261_0661: Ga0059261_0661 - hypothetical protein, at 701,117 to 701,263
_0661
Ga0059261_0662: Ga0059261_0662 - Truncated hemoglobins, at 701,353 to 701,769
_0662
Ga0059261_0663: Ga0059261_0663 - Prokaryotic homologs of the JAB domain, at 701,766 to 702,068
_0663
Ga0059261_0664: Ga0059261_0664 - pseudouridine synthase, RluA family, at 702,189 to 703,142
_0664
Position (kb) 701
702 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 700.615 kb on + strand, within Ga0059261_0660 at 700.789 kb on + strand, within Ga0059261_0660 at 700.789 kb on + strand, within Ga0059261_0660 at 700.789 kb on + strand, within Ga0059261_0660 at 700.790 kb on - strand, within Ga0059261_0660 at 700.790 kb on - strand, within Ga0059261_0660 at 700.819 kb on + strand, within Ga0059261_0660 at 700.819 kb on + strand, within Ga0059261_0660 at 700.819 kb on + strand, within Ga0059261_0660 at 700.819 kb on + strand, within Ga0059261_0660 at 700.820 kb on - strand at 700.820 kb on - strand, within Ga0059261_0660 at 700.820 kb on - strand, within Ga0059261_0660 at 700.820 kb on - strand, within Ga0059261_0660 at 700.886 kb on + strand, within Ga0059261_0660 at 700.886 kb on + strand, within Ga0059261_0660 at 700.887 kb on - strand, within Ga0059261_0660 at 701.279 kb on - strand at 701.279 kb on - strand at 701.279 kb on - strand at 701.291 kb on - strand at 701.350 kb on + strand at 701.350 kb on + strand at 701.350 kb on + strand at 701.350 kb on + strand at 701.350 kb on + strand at 701.350 kb on + strand at 701.350 kb on + strand at 701.350 kb on + strand at 701.350 kb on + strand at 701.350 kb on + strand at 701.351 kb on - strand at 701.351 kb on - strand at 701.351 kb on - strand at 701.351 kb on - strand at 701.351 kb on - strand at 701.351 kb on - strand at 701.351 kb on - strand at 701.351 kb on - strand at 701.351 kb on - strand at 701.361 kb on + strand at 701.361 kb on + strand at 701.361 kb on + strand at 701.362 kb on - strand at 701.362 kb on - strand at 701.362 kb on - strand at 701.434 kb on + strand, within Ga0059261_0662 at 701.435 kb on - strand, within Ga0059261_0662 at 701.435 kb on - strand, within Ga0059261_0662 at 701.435 kb on - strand, within Ga0059261_0662 at 701.557 kb on + strand, within Ga0059261_0662 at 701.557 kb on + strand, within Ga0059261_0662 at 701.557 kb on + strand, within Ga0059261_0662 at 701.767 kb on + strand at 701.768 kb on - strand at 701.768 kb on - strand at 702.182 kb on + strand at 702.182 kb on + strand at 702.182 kb on + strand at 702.183 kb on - strand at 702.183 kb on - strand at 702.211 kb on + strand at 702.211 kb on + strand at 702.211 kb on + strand at 702.212 kb on - strand at 702.212 kb on - strand at 702.715 kb on - strand, within Ga0059261_0664
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 700,615 + Ga0059261_0660 0.36 -0.3 700,789 + Ga0059261_0660 0.59 -0.1 700,789 + Ga0059261_0660 0.59 -0.8 700,789 + Ga0059261_0660 0.59 +0.9 700,790 - Ga0059261_0660 0.59 +0.4 700,790 - Ga0059261_0660 0.59 +0.6 700,819 + Ga0059261_0660 0.63 +0.9 700,819 + Ga0059261_0660 0.63 +0.6 700,819 + Ga0059261_0660 0.63 +0.3 700,819 + Ga0059261_0660 0.63 +0.2 700,820 - +3.1 700,820 - Ga0059261_0660 0.63 -3.2 700,820 - Ga0059261_0660 0.63 +0.3 700,820 - Ga0059261_0660 0.63 +0.0 700,886 + Ga0059261_0660 0.72 -0.8 700,886 + Ga0059261_0660 0.72 +0.3 700,887 - Ga0059261_0660 0.72 +1.1 701,279 - +0.5 701,279 - +0.3 701,279 - +0.6 701,291 - -0.3 701,350 + -0.0 701,350 + +0.8 701,350 + -0.9 701,350 + -0.2 701,350 + -0.1 701,350 + +0.6 701,350 + -0.6 701,350 + +0.5 701,350 + -0.4 701,350 + -0.2 701,351 - +0.8 701,351 - +0.1 701,351 - +0.2 701,351 - -0.0 701,351 - +0.5 701,351 - -0.1 701,351 - -0.3 701,351 - -0.2 701,351 - +0.5 701,361 + +1.7 701,361 + +0.3 701,361 + +0.1 701,362 - +0.3 701,362 - -0.7 701,362 - -0.3 701,434 + Ga0059261_0662 0.19 -0.4 701,435 - Ga0059261_0662 0.20 -0.7 701,435 - Ga0059261_0662 0.20 -0.2 701,435 - Ga0059261_0662 0.20 -1.1 701,557 + Ga0059261_0662 0.49 +0.3 701,557 + Ga0059261_0662 0.49 -0.6 701,557 + Ga0059261_0662 0.49 -2.4 701,767 + +0.1 701,768 - +0.5 701,768 - -0.9 702,182 + -0.0 702,182 + -0.2 702,182 + -1.0 702,183 - +0.5 702,183 - +0.5 702,211 + -1.2 702,211 + -0.5 702,211 + -2.0 702,212 - +0.2 702,212 - -0.2 702,715 - Ga0059261_0664 0.55 -2.1
Or see this region's nucleotide sequence