Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0646 and Ga0059261_0647 overlap by 4 nucleotides Ga0059261_0647 and Ga0059261_0648 are separated by 9 nucleotides
Ga0059261_0646: Ga0059261_0646 - methionyl-tRNA formyltransferase, at 686,523 to 687,446
_0646
Ga0059261_0647: Ga0059261_0647 - tRNA pseudouridine(38-40) synthase, at 687,443 to 688,183
_0647
Ga0059261_0648: Ga0059261_0648 - SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase, at 688,193 to 689,389
_0648
Position (kb) 687
688
689 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 686.528 kb on + strand at 686.528 kb on + strand at 686.528 kb on + strand at 687.470 kb on + strand at 687.471 kb on - strand at 687.501 kb on - strand at 687.773 kb on + strand, within Ga0059261_0647 at 687.773 kb on + strand at 687.773 kb on + strand, within Ga0059261_0647 at 687.773 kb on + strand, within Ga0059261_0647 at 687.773 kb on + strand, within Ga0059261_0647 at 687.773 kb on + strand, within Ga0059261_0647 at 687.773 kb on + strand, within Ga0059261_0647 at 687.774 kb on - strand, within Ga0059261_0647 at 687.774 kb on - strand, within Ga0059261_0647 at 687.774 kb on - strand, within Ga0059261_0647 at 687.774 kb on - strand, within Ga0059261_0647 at 687.774 kb on - strand, within Ga0059261_0647 at 687.779 kb on + strand, within Ga0059261_0647 at 687.779 kb on + strand, within Ga0059261_0647 at 687.779 kb on + strand, within Ga0059261_0647 at 687.779 kb on + strand, within Ga0059261_0647 at 687.779 kb on + strand, within Ga0059261_0647 at 687.780 kb on - strand, within Ga0059261_0647 at 687.998 kb on + strand, within Ga0059261_0647 at 688.157 kb on + strand at 688.157 kb on + strand at 688.175 kb on + strand at 688.176 kb on - strand at 688.332 kb on + strand, within Ga0059261_0648 at 688.332 kb on + strand, within Ga0059261_0648 at 688.332 kb on + strand, within Ga0059261_0648 at 688.332 kb on + strand, within Ga0059261_0648 at 688.333 kb on - strand, within Ga0059261_0648 at 688.333 kb on - strand, within Ga0059261_0648 at 688.548 kb on + strand, within Ga0059261_0648 at 688.548 kb on + strand, within Ga0059261_0648 at 688.548 kb on + strand, within Ga0059261_0648 at 688.548 kb on + strand at 688.548 kb on + strand, within Ga0059261_0648 at 688.548 kb on + strand, within Ga0059261_0648 at 688.549 kb on - strand, within Ga0059261_0648 at 688.549 kb on - strand, within Ga0059261_0648 at 688.714 kb on + strand, within Ga0059261_0648
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 686,528 + -2.9 686,528 + +0.5 686,528 + -0.6 687,470 + -0.8 687,471 - -0.5 687,501 - -0.9 687,773 + Ga0059261_0647 0.45 +0.5 687,773 + -0.9 687,773 + Ga0059261_0647 0.45 +0.5 687,773 + Ga0059261_0647 0.45 -1.5 687,773 + Ga0059261_0647 0.45 -2.1 687,773 + Ga0059261_0647 0.45 -0.9 687,773 + Ga0059261_0647 0.45 -0.5 687,774 - Ga0059261_0647 0.45 +0.1 687,774 - Ga0059261_0647 0.45 -1.1 687,774 - Ga0059261_0647 0.45 +0.3 687,774 - Ga0059261_0647 0.45 -0.1 687,774 - Ga0059261_0647 0.45 -0.4 687,779 + Ga0059261_0647 0.45 -1.4 687,779 + Ga0059261_0647 0.45 -0.4 687,779 + Ga0059261_0647 0.45 +0.7 687,779 + Ga0059261_0647 0.45 -0.9 687,779 + Ga0059261_0647 0.45 -1.4 687,780 - Ga0059261_0647 0.45 -0.1 687,998 + Ga0059261_0647 0.75 -0.3 688,157 + +1.5 688,157 + +0.5 688,175 + +0.3 688,176 - -1.8 688,332 + Ga0059261_0648 0.12 -0.5 688,332 + Ga0059261_0648 0.12 +0.3 688,332 + Ga0059261_0648 0.12 -0.7 688,332 + Ga0059261_0648 0.12 +0.9 688,333 - Ga0059261_0648 0.12 -0.4 688,333 - Ga0059261_0648 0.12 +0.7 688,548 + Ga0059261_0648 0.30 +0.3 688,548 + Ga0059261_0648 0.30 -0.4 688,548 + Ga0059261_0648 0.30 +0.2 688,548 + +0.6 688,548 + Ga0059261_0648 0.30 +0.5 688,548 + Ga0059261_0648 0.30 -0.7 688,549 - Ga0059261_0648 0.30 +0.7 688,549 - Ga0059261_0648 0.30 -0.5 688,714 + Ga0059261_0648 0.44 +0.2
Or see this region's nucleotide sequence