Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0366 and Ga0059261_0367 are separated by 350 nucleotides Ga0059261_0367 and Ga0059261_0368 are separated by 12 nucleotides Ga0059261_0368 and Ga0059261_0369 are separated by 12 nucleotides Ga0059261_0369 and Ga0059261_0370 are separated by 185 nucleotides
Ga0059261_0366: Ga0059261_0366 - Predicted integral membrane protein, at 352,855 to 353,229
_0366
Ga0059261_0367: Ga0059261_0367 - ribosomal protein S6, at 353,580 to 353,978
_0367
Ga0059261_0368: Ga0059261_0368 - ribosomal protein S18, at 353,991 to 354,215
_0368
Ga0059261_0369: Ga0059261_0369 - ribosomal protein L9, at 354,228 to 354,827
_0369
Ga0059261_0370: Ga0059261_0370 - Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes, at 355,013 to 356,563
_0370
Position (kb) 354
355 Strain fitness (log2 ratio) -2
-1
0
1
2 at 353.298 kb on + strand at 353.299 kb on - strand at 353.299 kb on - strand at 353.299 kb on - strand at 353.299 kb on - strand at 353.372 kb on + strand at 353.373 kb on - strand at 353.387 kb on + strand at 353.387 kb on + strand at 353.387 kb on + strand at 353.388 kb on - strand at 353.388 kb on - strand at 353.388 kb on - strand at 353.396 kb on + strand at 353.396 kb on + strand at 353.397 kb on - strand at 354.603 kb on + strand, within Ga0059261_0369 at 354.603 kb on + strand, within Ga0059261_0369 at 354.603 kb on + strand, within Ga0059261_0369 at 354.603 kb on + strand, within Ga0059261_0369 at 354.604 kb on - strand, within Ga0059261_0369 at 354.825 kb on + strand at 354.826 kb on - strand at 354.826 kb on - strand at 355.079 kb on + strand at 355.080 kb on - strand at 355.158 kb on - strand at 355.286 kb on + strand, within Ga0059261_0370 at 355.286 kb on + strand, within Ga0059261_0370 at 355.286 kb on + strand, within Ga0059261_0370 at 355.286 kb on + strand, within Ga0059261_0370 at 355.286 kb on + strand, within Ga0059261_0370 at 355.286 kb on + strand, within Ga0059261_0370 at 355.286 kb on + strand, within Ga0059261_0370 at 355.287 kb on - strand, within Ga0059261_0370 at 355.287 kb on - strand, within Ga0059261_0370 at 355.287 kb on - strand, within Ga0059261_0370 at 355.289 kb on + strand, within Ga0059261_0370 at 355.289 kb on + strand, within Ga0059261_0370 at 355.289 kb on + strand, within Ga0059261_0370 at 355.289 kb on + strand, within Ga0059261_0370 at 355.289 kb on + strand, within Ga0059261_0370 at 355.289 kb on + strand, within Ga0059261_0370 at 355.289 kb on + strand, within Ga0059261_0370 at 355.289 kb on + strand, within Ga0059261_0370 at 355.289 kb on + strand at 355.289 kb on + strand, within Ga0059261_0370 at 355.290 kb on - strand, within Ga0059261_0370 at 355.290 kb on - strand, within Ga0059261_0370 at 355.290 kb on - strand, within Ga0059261_0370 at 355.290 kb on - strand, within Ga0059261_0370 at 355.290 kb on - strand, within Ga0059261_0370 at 355.290 kb on - strand, within Ga0059261_0370 at 355.290 kb on - strand, within Ga0059261_0370 at 355.290 kb on - strand, within Ga0059261_0370 at 355.290 kb on - strand, within Ga0059261_0370 at 355.290 kb on - strand, within Ga0059261_0370 at 355.290 kb on - strand, within Ga0059261_0370 at 355.290 kb on - strand, within Ga0059261_0370 at 355.290 kb on - strand, within Ga0059261_0370 at 355.290 kb on - strand, within Ga0059261_0370 at 355.290 kb on - strand, within Ga0059261_0370 at 355.291 kb on + strand, within Ga0059261_0370 at 355.291 kb on + strand, within Ga0059261_0370 at 355.292 kb on - strand, within Ga0059261_0370 at 355.292 kb on - strand, within Ga0059261_0370 at 355.292 kb on - strand, within Ga0059261_0370 at 355.292 kb on - strand, within Ga0059261_0370 at 355.385 kb on - strand, within Ga0059261_0370 at 355.604 kb on + strand, within Ga0059261_0370 at 355.605 kb on - strand, within Ga0059261_0370 at 355.605 kb on - strand, within Ga0059261_0370 at 355.697 kb on + strand, within Ga0059261_0370 at 355.697 kb on + strand, within Ga0059261_0370 at 355.820 kb on + strand, within Ga0059261_0370 at 355.820 kb on + strand, within Ga0059261_0370 at 355.820 kb on + strand, within Ga0059261_0370
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 353,298 + -1.8 353,299 - +0.2 353,299 - +0.4 353,299 - +0.4 353,299 - +0.2 353,372 + -1.2 353,373 - +0.5 353,387 + +0.2 353,387 + +0.4 353,387 + +0.8 353,388 - +0.2 353,388 - -0.0 353,388 - -0.5 353,396 + +0.1 353,396 + -0.5 353,397 - -2.1 354,603 + Ga0059261_0369 0.62 -1.8 354,603 + Ga0059261_0369 0.62 +1.0 354,603 + Ga0059261_0369 0.62 -1.5 354,603 + Ga0059261_0369 0.62 -0.5 354,604 - Ga0059261_0369 0.63 +1.0 354,825 + -1.5 354,826 - -1.2 354,826 - +0.2 355,079 + +0.3 355,080 - +1.6 355,158 - -0.4 355,286 + Ga0059261_0370 0.18 -1.5 355,286 + Ga0059261_0370 0.18 +0.8 355,286 + Ga0059261_0370 0.18 -0.4 355,286 + Ga0059261_0370 0.18 -0.7 355,286 + Ga0059261_0370 0.18 +0.5 355,286 + Ga0059261_0370 0.18 +0.4 355,286 + Ga0059261_0370 0.18 +0.2 355,287 - Ga0059261_0370 0.18 +0.0 355,287 - Ga0059261_0370 0.18 -2.5 355,287 - Ga0059261_0370 0.18 -0.2 355,289 + Ga0059261_0370 0.18 +0.5 355,289 + Ga0059261_0370 0.18 -0.9 355,289 + Ga0059261_0370 0.18 -0.0 355,289 + Ga0059261_0370 0.18 +0.1 355,289 + Ga0059261_0370 0.18 +0.0 355,289 + Ga0059261_0370 0.18 -0.3 355,289 + Ga0059261_0370 0.18 +0.6 355,289 + Ga0059261_0370 0.18 -0.3 355,289 + +1.0 355,289 + Ga0059261_0370 0.18 -2.0 355,290 - Ga0059261_0370 0.18 -0.6 355,290 - Ga0059261_0370 0.18 +0.8 355,290 - Ga0059261_0370 0.18 +1.6 355,290 - Ga0059261_0370 0.18 +0.5 355,290 - Ga0059261_0370 0.18 +0.6 355,290 - Ga0059261_0370 0.18 -0.3 355,290 - Ga0059261_0370 0.18 -0.6 355,290 - Ga0059261_0370 0.18 -0.2 355,290 - Ga0059261_0370 0.18 +1.0 355,290 - Ga0059261_0370 0.18 -0.5 355,290 - Ga0059261_0370 0.18 +1.3 355,290 - Ga0059261_0370 0.18 -1.8 355,290 - Ga0059261_0370 0.18 +1.2 355,290 - Ga0059261_0370 0.18 +0.6 355,290 - Ga0059261_0370 0.18 +0.5 355,291 + Ga0059261_0370 0.18 -0.0 355,291 + Ga0059261_0370 0.18 +0.5 355,292 - Ga0059261_0370 0.18 +1.9 355,292 - Ga0059261_0370 0.18 +1.5 355,292 - Ga0059261_0370 0.18 -0.3 355,292 - Ga0059261_0370 0.18 -0.0 355,385 - Ga0059261_0370 0.24 +0.4 355,604 + Ga0059261_0370 0.38 -1.3 355,605 - Ga0059261_0370 0.38 -0.6 355,605 - Ga0059261_0370 0.38 +0.3 355,697 + Ga0059261_0370 0.44 -2.5 355,697 + Ga0059261_0370 0.44 -0.7 355,820 + Ga0059261_0370 0.52 +0.1 355,820 + Ga0059261_0370 0.52 -0.4 355,820 + Ga0059261_0370 0.52 +0.2
Or see this region's nucleotide sequence