Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0344

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0343 and Ga0059261_0344 are separated by 249 nucleotidesGa0059261_0344 and Ga0059261_0345 are separated by 87 nucleotides Ga0059261_0343: Ga0059261_0343 - Outer membrane receptor proteins, mostly Fe transport, at 329,805 to 332,267 _0343 Ga0059261_0344: Ga0059261_0344 - Molecular chaperone (small heat shock protein), at 332,517 to 332,990 _0344 Ga0059261_0345: Ga0059261_0345 - Predicted hydrolase of the alpha/beta superfamily, at 333,078 to 333,986 _0345 Position (kb) 332 333Strain fitness (log2 ratio) -2 -1 0 1 2at 331.527 kb on - strand, within Ga0059261_0343at 331.527 kb on - strand, within Ga0059261_0343at 331.546 kb on + strand, within Ga0059261_0343at 331.546 kb on + strand, within Ga0059261_0343at 331.546 kb on + strand, within Ga0059261_0343at 331.546 kb on + strand, within Ga0059261_0343at 331.546 kb on + strand, within Ga0059261_0343at 331.546 kb on + strand, within Ga0059261_0343at 331.546 kb on + strand, within Ga0059261_0343at 331.546 kb on + strand, within Ga0059261_0343at 331.546 kb on + strand, within Ga0059261_0343at 331.547 kb on - strand, within Ga0059261_0343at 331.547 kb on - strand, within Ga0059261_0343at 331.547 kb on - strand, within Ga0059261_0343at 331.547 kb on - strand, within Ga0059261_0343at 331.547 kb on - strand, within Ga0059261_0343at 331.547 kb on - strand, within Ga0059261_0343at 331.547 kb on - strand, within Ga0059261_0343at 331.547 kb on - strand, within Ga0059261_0343at 331.547 kb on - strand, within Ga0059261_0343at 331.759 kb on + strandat 331.759 kb on + strand, within Ga0059261_0343at 331.759 kb on + strand, within Ga0059261_0343at 331.760 kb on - strand, within Ga0059261_0343at 331.766 kb on + strand, within Ga0059261_0343at 331.766 kb on + strand, within Ga0059261_0343at 331.767 kb on - strand, within Ga0059261_0343at 331.767 kb on - strand, within Ga0059261_0343at 331.843 kb on + strand, within Ga0059261_0343at 331.843 kb on + strand, within Ga0059261_0343at 331.843 kb on + strand, within Ga0059261_0343at 331.843 kb on + strand, within Ga0059261_0343at 331.844 kb on - strand, within Ga0059261_0343at 331.844 kb on - strand, within Ga0059261_0343at 331.844 kb on - strand, within Ga0059261_0343at 331.844 kb on - strand, within Ga0059261_0343at 331.844 kb on - strand, within Ga0059261_0343at 331.844 kb on - strand, within Ga0059261_0343at 331.844 kb on - strand, within Ga0059261_0343at 331.844 kb on - strand, within Ga0059261_0343at 331.856 kb on + strand, within Ga0059261_0343at 331.858 kb on + strand, within Ga0059261_0343at 331.858 kb on + strand, within Ga0059261_0343at 331.858 kb on + strand, within Ga0059261_0343at 331.858 kb on + strand, within Ga0059261_0343at 331.858 kb on + strand, within Ga0059261_0343at 331.858 kb on + strand, within Ga0059261_0343at 331.858 kb on + strand, within Ga0059261_0343at 331.858 kb on + strand, within Ga0059261_0343at 331.858 kb on + strand, within Ga0059261_0343at 331.859 kb on - strand, within Ga0059261_0343at 331.859 kb on - strand, within Ga0059261_0343at 331.922 kb on + strand, within Ga0059261_0343at 331.922 kb on + strand, within Ga0059261_0343at 331.923 kb on - strand, within Ga0059261_0343at 331.954 kb on + strand, within Ga0059261_0343at 332.250 kb on + strandat 332.250 kb on + strandat 332.282 kb on + strandat 332.282 kb on + strandat 332.512 kb on - strandat 332.512 kb on - strandat 332.619 kb on + strand, within Ga0059261_0344at 332.619 kb on + strand, within Ga0059261_0344at 332.619 kb on + strand, within Ga0059261_0344at 332.619 kb on + strand, within Ga0059261_0344at 332.620 kb on - strand, within Ga0059261_0344at 332.620 kb on - strand, within Ga0059261_0344at 333.022 kb on - strandat 333.022 kb on - strandat 333.079 kb on + strandat 333.116 kb on + strandat 333.117 kb on - strandat 333.117 kb on - strandat 333.117 kb on - strandat 333.159 kb on + strandat 333.159 kb on + strandat 333.160 kb on - strandat 333.160 kb on - strandat 333.160 kb on - strandat 333.160 kb on - strandat 333.201 kb on + strand, within Ga0059261_0345at 333.201 kb on + strand, within Ga0059261_0345at 333.202 kb on - strand, within Ga0059261_0345at 333.202 kb on - strand, within Ga0059261_0345at 333.254 kb on - strand, within Ga0059261_0345at 333.283 kb on + strand, within Ga0059261_0345at 333.283 kb on + strand, within Ga0059261_0345at 333.283 kb on + strand, within Ga0059261_0345at 333.283 kb on + strand, within Ga0059261_0345at 333.283 kb on + strand, within Ga0059261_0345at 333.284 kb on - strand, within Ga0059261_0345at 333.295 kb on + strand, within Ga0059261_0345at 333.295 kb on + strand, within Ga0059261_0345at 333.295 kb on + strand, within Ga0059261_0345at 333.295 kb on + strand, within Ga0059261_0345at 333.295 kb on + strand, within Ga0059261_0345at 333.296 kb on - strand, within Ga0059261_0345at 333.296 kb on - strandat 333.337 kb on + strand, within Ga0059261_0345at 333.338 kb on - strand, within Ga0059261_0345at 333.338 kb on - strand, within Ga0059261_0345at 333.338 kb on - strand, within Ga0059261_0345at 333.373 kb on + strand, within Ga0059261_0345at 333.373 kb on + strand, within Ga0059261_0345at 333.373 kb on + strand, within Ga0059261_0345at 333.373 kb on + strand, within Ga0059261_0345at 333.374 kb on - strand, within Ga0059261_0345at 333.379 kb on - strand, within Ga0059261_0345at 333.401 kb on - strand, within Ga0059261_0345at 333.457 kb on + strand, within Ga0059261_0345at 333.457 kb on + strand, within Ga0059261_0345at 333.457 kb on + strand, within Ga0059261_0345at 333.457 kb on + strand, within Ga0059261_0345at 333.457 kb on + strand, within Ga0059261_0345at 333.457 kb on + strand, within Ga0059261_0345at 333.457 kb on + strand, within Ga0059261_0345at 333.457 kb on + strand, within Ga0059261_0345at 333.457 kb on + strand, within Ga0059261_0345at 333.458 kb on - strand, within Ga0059261_0345at 333.458 kb on - strand, within Ga0059261_0345at 333.458 kb on - strandat 333.458 kb on - strand, within Ga0059261_0345at 333.458 kb on - strand, within Ga0059261_0345at 333.458 kb on - strand, within Ga0059261_0345at 333.458 kb on - strand, within Ga0059261_0345at 333.611 kb on + strand, within Ga0059261_0345at 333.611 kb on + strand, within Ga0059261_0345at 333.611 kb on + strand, within Ga0059261_0345at 333.611 kb on + strand, within Ga0059261_0345at 333.612 kb on - strand, within Ga0059261_0345at 333.612 kb on - strand, within Ga0059261_0345at 333.612 kb on - strand, within Ga0059261_0345at 333.612 kb on - strandat 333.612 kb on - strand, within Ga0059261_0345at 333.613 kb on + strand, within Ga0059261_0345at 333.613 kb on + strand, within Ga0059261_0345at 333.613 kb on + strand, within Ga0059261_0345at 333.742 kb on + strand, within Ga0059261_0345at 333.742 kb on + strand, within Ga0059261_0345at 333.742 kb on + strand, within Ga0059261_0345at 333.743 kb on - strand, within Ga0059261_0345at 333.743 kb on - strand, within Ga0059261_0345at 333.743 kb on - strandat 333.743 kb on - strand, within Ga0059261_0345at 333.743 kb on - strand, within Ga0059261_0345at 333.760 kb on + strand, within Ga0059261_0345at 333.760 kb on + strand, within Ga0059261_0345at 333.760 kb on + strand, within Ga0059261_0345at 333.760 kb on + strand, within Ga0059261_0345at 333.760 kb on + strand, within Ga0059261_0345at 333.760 kb on + strand, within Ga0059261_0345at 333.760 kb on + strand, within Ga0059261_0345at 333.760 kb on + strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.797 kb on - strand, within Ga0059261_0345at 333.826 kb on + strand, within Ga0059261_0345at 333.826 kb on + strand, within Ga0059261_0345at 333.826 kb on + strand, within Ga0059261_0345at 333.827 kb on - strand, within Ga0059261_0345at 333.827 kb on - strand, within Ga0059261_0345at 333.827 kb on - strand, within Ga0059261_0345at 333.883 kb on + strand, within Ga0059261_0345at 333.883 kb on + strand, within Ga0059261_0345at 333.883 kb on + strand, within Ga0059261_0345at 333.883 kb on + strand, within Ga0059261_0345at 333.883 kb on + strand, within Ga0059261_0345at 333.884 kb on - strand, within Ga0059261_0345at 333.884 kb on - strand, within Ga0059261_0345at 333.884 kb on - strand, within Ga0059261_0345at 333.884 kb on - strand, within Ga0059261_0345at 333.978 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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331,527 - Ga0059261_0343 0.70 -0.2
331,527 - Ga0059261_0343 0.70 +0.1
331,546 + Ga0059261_0343 0.71 -0.1
331,546 + Ga0059261_0343 0.71 -0.1
331,546 + Ga0059261_0343 0.71 -0.4
331,546 + Ga0059261_0343 0.71 +0.0
331,546 + Ga0059261_0343 0.71 -0.5
331,546 + Ga0059261_0343 0.71 -0.5
331,546 + Ga0059261_0343 0.71 -0.7
331,546 + Ga0059261_0343 0.71 +0.3
331,546 + Ga0059261_0343 0.71 -0.9
331,547 - Ga0059261_0343 0.71 -0.4
331,547 - Ga0059261_0343 0.71 +0.0
331,547 - Ga0059261_0343 0.71 -0.8
331,547 - Ga0059261_0343 0.71 +0.0
331,547 - Ga0059261_0343 0.71 +0.5
331,547 - Ga0059261_0343 0.71 -0.2
331,547 - Ga0059261_0343 0.71 -0.8
331,547 - Ga0059261_0343 0.71 +0.0
331,547 - Ga0059261_0343 0.71 +1.0
331,759 + +0.0
331,759 + Ga0059261_0343 0.79 -0.3
331,759 + Ga0059261_0343 0.79 +0.2
331,760 - Ga0059261_0343 0.79 +0.3
331,766 + Ga0059261_0343 0.80 +0.5
331,766 + Ga0059261_0343 0.80 -0.2
331,767 - Ga0059261_0343 0.80 +0.3
331,767 - Ga0059261_0343 0.80 +0.3
331,843 + Ga0059261_0343 0.83 +0.3
331,843 + Ga0059261_0343 0.83 +0.0
331,843 + Ga0059261_0343 0.83 +0.5
331,843 + Ga0059261_0343 0.83 +1.6
331,844 - Ga0059261_0343 0.83 -1.2
331,844 - Ga0059261_0343 0.83 -0.3
331,844 - Ga0059261_0343 0.83 -0.1
331,844 - Ga0059261_0343 0.83 -0.1
331,844 - Ga0059261_0343 0.83 -1.2
331,844 - Ga0059261_0343 0.83 +0.0
331,844 - Ga0059261_0343 0.83 +0.9
331,844 - Ga0059261_0343 0.83 -0.3
331,856 + Ga0059261_0343 0.83 +0.0
331,858 + Ga0059261_0343 0.83 +0.8
331,858 + Ga0059261_0343 0.83 -0.0
331,858 + Ga0059261_0343 0.83 +0.3
331,858 + Ga0059261_0343 0.83 -0.2
331,858 + Ga0059261_0343 0.83 +1.5
331,858 + Ga0059261_0343 0.83 +0.2
331,858 + Ga0059261_0343 0.83 +0.3
331,858 + Ga0059261_0343 0.83 +0.6
331,858 + Ga0059261_0343 0.83 +0.3
331,859 - Ga0059261_0343 0.83 +0.0
331,859 - Ga0059261_0343 0.83 +0.5
331,922 + Ga0059261_0343 0.86 +0.2
331,922 + Ga0059261_0343 0.86 +0.2
331,923 - Ga0059261_0343 0.86 -0.7
331,954 + Ga0059261_0343 0.87 +0.4
332,250 + +0.2
332,250 + +0.7
332,282 + +0.4
332,282 + -0.2
332,512 - -0.8
332,512 - +0.4
332,619 + Ga0059261_0344 0.22 +1.0
332,619 + Ga0059261_0344 0.22 -0.1
332,619 + Ga0059261_0344 0.22 +1.6
332,619 + Ga0059261_0344 0.22 +2.0
332,620 - Ga0059261_0344 0.22 -0.4
332,620 - Ga0059261_0344 0.22 +1.8
333,022 - +0.1
333,022 - +1.0
333,079 + +0.6
333,116 + +1.3
333,117 - -0.3
333,117 - +1.2
333,117 - -0.1
333,159 + -1.0
333,159 + +0.1
333,160 - +0.4
333,160 - +0.0
333,160 - -0.3
333,160 - +1.0
333,201 + Ga0059261_0345 0.14 +0.5
333,201 + Ga0059261_0345 0.14 +0.0
333,202 - Ga0059261_0345 0.14 -0.3
333,202 - Ga0059261_0345 0.14 +0.6
333,254 - Ga0059261_0345 0.19 -1.1
333,283 + Ga0059261_0345 0.23 +0.1
333,283 + Ga0059261_0345 0.23 +0.9
333,283 + Ga0059261_0345 0.23 -0.6
333,283 + Ga0059261_0345 0.23 +0.4
333,283 + Ga0059261_0345 0.23 +0.6
333,284 - Ga0059261_0345 0.23 +0.1
333,295 + Ga0059261_0345 0.24 +0.4
333,295 + Ga0059261_0345 0.24 -0.2
333,295 + Ga0059261_0345 0.24 -0.1
333,295 + Ga0059261_0345 0.24 +0.4
333,295 + Ga0059261_0345 0.24 -0.1
333,296 - Ga0059261_0345 0.24 -0.1
333,296 - +2.0
333,337 + Ga0059261_0345 0.28 +0.1
333,338 - Ga0059261_0345 0.29 -0.3
333,338 - Ga0059261_0345 0.29 -0.5
333,338 - Ga0059261_0345 0.29 -2.0
333,373 + Ga0059261_0345 0.32 +0.5
333,373 + Ga0059261_0345 0.32 +1.1
333,373 + Ga0059261_0345 0.32 +0.1
333,373 + Ga0059261_0345 0.32 +0.0
333,374 - Ga0059261_0345 0.33 -0.6
333,379 - Ga0059261_0345 0.33 -0.3
333,401 - Ga0059261_0345 0.36 -0.7
333,457 + Ga0059261_0345 0.42 -1.0
333,457 + Ga0059261_0345 0.42 +0.5
333,457 + Ga0059261_0345 0.42 -0.4
333,457 + Ga0059261_0345 0.42 +0.6
333,457 + Ga0059261_0345 0.42 -0.6
333,457 + Ga0059261_0345 0.42 -0.2
333,457 + Ga0059261_0345 0.42 +0.4
333,457 + Ga0059261_0345 0.42 +0.4
333,457 + Ga0059261_0345 0.42 -0.7
333,458 - Ga0059261_0345 0.42 -0.2
333,458 - Ga0059261_0345 0.42 +0.2
333,458 - +1.8
333,458 - Ga0059261_0345 0.42 +0.4
333,458 - Ga0059261_0345 0.42 -0.1
333,458 - Ga0059261_0345 0.42 -0.4
333,458 - Ga0059261_0345 0.42 -0.1
333,611 + Ga0059261_0345 0.59 +0.6
333,611 + Ga0059261_0345 0.59 -0.4
333,611 + Ga0059261_0345 0.59 -1.4
333,611 + Ga0059261_0345 0.59 +1.1
333,612 - Ga0059261_0345 0.59 +0.3
333,612 - Ga0059261_0345 0.59 +2.2
333,612 - Ga0059261_0345 0.59 +0.7
333,612 - -0.5
333,612 - Ga0059261_0345 0.59 +0.1
333,613 + Ga0059261_0345 0.59 +0.5
333,613 + Ga0059261_0345 0.59 -1.5
333,613 + Ga0059261_0345 0.59 +0.7
333,742 + Ga0059261_0345 0.73 +0.3
333,742 + Ga0059261_0345 0.73 -0.4
333,742 + Ga0059261_0345 0.73 +1.0
333,743 - Ga0059261_0345 0.73 -0.5
333,743 - Ga0059261_0345 0.73 -0.5
333,743 - +1.0
333,743 - Ga0059261_0345 0.73 +0.8
333,743 - Ga0059261_0345 0.73 +0.7
333,760 + Ga0059261_0345 0.75 -0.2
333,760 + Ga0059261_0345 0.75 -0.4
333,760 + Ga0059261_0345 0.75 +0.2
333,760 + Ga0059261_0345 0.75 -0.4
333,760 + Ga0059261_0345 0.75 +0.6
333,760 + Ga0059261_0345 0.75 -0.8
333,760 + Ga0059261_0345 0.75 -1.1
333,760 + Ga0059261_0345 0.75 +0.7
333,761 - Ga0059261_0345 0.75 -0.3
333,761 - Ga0059261_0345 0.75 +0.2
333,761 - Ga0059261_0345 0.75 -0.3
333,761 - Ga0059261_0345 0.75 -0.2
333,761 - Ga0059261_0345 0.75 +1.0
333,761 - Ga0059261_0345 0.75 +0.0
333,761 - Ga0059261_0345 0.75 +0.6
333,761 - Ga0059261_0345 0.75 +0.4
333,761 - Ga0059261_0345 0.75 -0.3
333,761 - Ga0059261_0345 0.75 -1.3
333,761 - Ga0059261_0345 0.75 +2.6
333,761 - Ga0059261_0345 0.75 +0.3
333,761 - Ga0059261_0345 0.75 +0.5
333,761 - Ga0059261_0345 0.75 -0.3
333,761 - Ga0059261_0345 0.75 +1.2
333,761 - Ga0059261_0345 0.75 +0.3
333,761 - Ga0059261_0345 0.75 -1.8
333,797 - Ga0059261_0345 0.79 +0.1
333,826 + Ga0059261_0345 0.82 -0.0
333,826 + Ga0059261_0345 0.82 +0.2
333,826 + Ga0059261_0345 0.82 +0.2
333,827 - Ga0059261_0345 0.82 -0.5
333,827 - Ga0059261_0345 0.82 -0.8
333,827 - Ga0059261_0345 0.82 -0.2
333,883 + Ga0059261_0345 0.89 -0.0
333,883 + Ga0059261_0345 0.89 +1.0
333,883 + Ga0059261_0345 0.89 -0.6
333,883 + Ga0059261_0345 0.89 +1.2
333,883 + Ga0059261_0345 0.89 +0.1
333,884 - Ga0059261_0345 0.89 +0.2
333,884 - Ga0059261_0345 0.89 -0.5
333,884 - Ga0059261_0345 0.89 -0.6
333,884 - Ga0059261_0345 0.89 -0.1
333,978 + +0.2

Or see this region's nucleotide sequence