Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0304

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0303 and Ga0059261_0304 are separated by 82 nucleotidesGa0059261_0304 and Ga0059261_0305 are separated by 107 nucleotidesGa0059261_0305 and Ga0059261_0306 are separated by 58 nucleotides Ga0059261_0303: Ga0059261_0303 - Predicted membrane protein, at 287,234 to 288,484 _0303 Ga0059261_0304: Ga0059261_0304 - Bacterioferritin-associated ferredoxin, at 288,567 to 288,737 _0304 Ga0059261_0305: Ga0059261_0305 - bacterioferritin, at 288,845 to 289,327 _0305 Ga0059261_0306: Ga0059261_0306 - FOG: HPt domain, at 289,386 to 289,805 _0306 Position (kb) 288 289Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 287.600 kb on + strand, within Ga0059261_0303at 287.600 kb on + strand, within Ga0059261_0303at 287.600 kb on + strand, within Ga0059261_0303at 287.600 kb on + strand, within Ga0059261_0303at 287.601 kb on - strand, within Ga0059261_0303at 287.601 kb on - strand, within Ga0059261_0303at 287.601 kb on - strand, within Ga0059261_0303at 287.601 kb on - strand, within Ga0059261_0303at 287.840 kb on + strand, within Ga0059261_0303at 287.951 kb on + strand, within Ga0059261_0303at 287.951 kb on + strand, within Ga0059261_0303at 287.951 kb on + strand, within Ga0059261_0303at 287.951 kb on + strand, within Ga0059261_0303at 287.951 kb on + strand, within Ga0059261_0303at 287.951 kb on + strand, within Ga0059261_0303at 287.951 kb on + strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.952 kb on - strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.953 kb on + strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.954 kb on - strand, within Ga0059261_0303at 287.993 kb on - strand, within Ga0059261_0303at 288.018 kb on - strand, within Ga0059261_0303at 288.062 kb on + strand, within Ga0059261_0303at 288.063 kb on - strand, within Ga0059261_0303at 288.063 kb on - strand, within Ga0059261_0303at 288.063 kb on - strand, within Ga0059261_0303at 288.063 kb on - strand, within Ga0059261_0303at 288.257 kb on + strand, within Ga0059261_0303at 288.257 kb on + strand, within Ga0059261_0303at 288.257 kb on + strand, within Ga0059261_0303at 288.257 kb on + strand, within Ga0059261_0303at 288.257 kb on + strand, within Ga0059261_0303at 288.257 kb on + strand, within Ga0059261_0303at 288.257 kb on + strand, within Ga0059261_0303at 288.258 kb on - strand, within Ga0059261_0303at 288.258 kb on - strand, within Ga0059261_0303at 288.258 kb on - strand, within Ga0059261_0303at 288.293 kb on + strand, within Ga0059261_0303at 288.293 kb on + strand, within Ga0059261_0303at 288.293 kb on + strand, within Ga0059261_0303at 288.294 kb on - strand, within Ga0059261_0303at 288.294 kb on - strand, within Ga0059261_0303at 288.294 kb on - strand, within Ga0059261_0303at 288.294 kb on - strand, within Ga0059261_0303at 288.294 kb on - strand, within Ga0059261_0303at 288.314 kb on + strand, within Ga0059261_0303at 288.314 kb on + strand, within Ga0059261_0303at 288.315 kb on - strand, within Ga0059261_0303at 288.315 kb on - strand, within Ga0059261_0303at 288.315 kb on - strand, within Ga0059261_0303at 288.341 kb on + strand, within Ga0059261_0303at 288.341 kb on + strand, within Ga0059261_0303at 288.342 kb on - strand, within Ga0059261_0303at 288.342 kb on - strand, within Ga0059261_0303at 288.342 kb on - strand, within Ga0059261_0303at 288.411 kb on - strandat 288.482 kb on + strandat 288.482 kb on + strandat 288.482 kb on + strandat 288.483 kb on - strandat 288.483 kb on - strandat 288.483 kb on - strandat 288.539 kb on - strandat 288.542 kb on + strandat 288.543 kb on - strandat 288.543 kb on - strandat 288.543 kb on - strandat 288.651 kb on + strand, within Ga0059261_0304at 288.652 kb on - strand, within Ga0059261_0304at 288.806 kb on - strandat 288.806 kb on - strandat 288.872 kb on + strandat 288.873 kb on - strandat 288.873 kb on - strandat 288.917 kb on + strand, within Ga0059261_0305at 288.918 kb on - strand, within Ga0059261_0305at 288.929 kb on + strand, within Ga0059261_0305at 288.930 kb on - strand, within Ga0059261_0305at 289.128 kb on - strand, within Ga0059261_0305at 289.128 kb on - strand, within Ga0059261_0305at 289.184 kb on + strand, within Ga0059261_0305at 289.185 kb on - strand, within Ga0059261_0305at 289.185 kb on - strand, within Ga0059261_0305at 289.240 kb on + strand, within Ga0059261_0305at 289.289 kb on + strandat 289.289 kb on + strandat 289.289 kb on + strandat 289.289 kb on + strandat 289.289 kb on + strandat 289.290 kb on - strandat 289.290 kb on - strandat 289.290 kb on - strandat 289.290 kb on - strandat 289.325 kb on + strandat 289.325 kb on + strandat 289.325 kb on + strandat 289.326 kb on - strandat 289.387 kb on + strandat 289.387 kb on + strandat 289.387 kb on + strandat 289.387 kb on + strandat 289.387 kb on + strandat 289.387 kb on + strandat 289.387 kb on + strandat 289.387 kb on + strandat 289.388 kb on - strandat 289.388 kb on - strandat 289.388 kb on - strandat 289.388 kb on - strandat 289.388 kb on - strandat 289.388 kb on - strandat 289.388 kb on - strandat 289.388 kb on - strandat 289.388 kb on - strandat 289.388 kb on - strandat 289.388 kb on - strandat 289.526 kb on - strand, within Ga0059261_0306at 289.526 kb on - strand, within Ga0059261_0306at 289.538 kb on + strand, within Ga0059261_0306at 289.538 kb on + strand, within Ga0059261_0306at 289.538 kb on + strand, within Ga0059261_0306at 289.539 kb on - strand, within Ga0059261_0306at 289.622 kb on + strand, within Ga0059261_0306at 289.622 kb on + strand, within Ga0059261_0306at 289.622 kb on + strand, within Ga0059261_0306at 289.622 kb on + strand, within Ga0059261_0306at 289.622 kb on + strand, within Ga0059261_0306at 289.623 kb on - strand, within Ga0059261_0306at 289.623 kb on - strandat 289.623 kb on - strand, within Ga0059261_0306at 289.711 kb on + strand, within Ga0059261_0306at 289.712 kb on - strand, within Ga0059261_0306at 289.712 kb on - strand, within Ga0059261_0306at 289.716 kb on + strandat 289.716 kb on + strand, within Ga0059261_0306at 289.717 kb on - strand, within Ga0059261_0306

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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287,600 + Ga0059261_0303 0.29 -0.5
287,600 + Ga0059261_0303 0.29 +0.0
287,600 + Ga0059261_0303 0.29 +0.1
287,600 + Ga0059261_0303 0.29 -0.4
287,601 - Ga0059261_0303 0.29 -0.9
287,601 - Ga0059261_0303 0.29 +1.5
287,601 - Ga0059261_0303 0.29 -0.6
287,601 - Ga0059261_0303 0.29 +0.1
287,840 + Ga0059261_0303 0.48 +0.3
287,951 + Ga0059261_0303 0.57 -0.0
287,951 + Ga0059261_0303 0.57 -0.3
287,951 + Ga0059261_0303 0.57 +0.6
287,951 + Ga0059261_0303 0.57 +1.0
287,951 + Ga0059261_0303 0.57 -0.5
287,951 + Ga0059261_0303 0.57 +0.6
287,951 + Ga0059261_0303 0.57 -0.6
287,952 - Ga0059261_0303 0.57 -1.0
287,952 - Ga0059261_0303 0.57 -0.1
287,952 - Ga0059261_0303 0.57 +0.2
287,952 - Ga0059261_0303 0.57 -0.1
287,952 - Ga0059261_0303 0.57 -1.0
287,952 - Ga0059261_0303 0.57 -1.1
287,952 - Ga0059261_0303 0.57 +0.6
287,952 - Ga0059261_0303 0.57 -0.2
287,952 - Ga0059261_0303 0.57 -0.5
287,952 - Ga0059261_0303 0.57 +0.2
287,952 - Ga0059261_0303 0.57 -0.2
287,952 - Ga0059261_0303 0.57 -0.4
287,952 - Ga0059261_0303 0.57 -1.0
287,952 - Ga0059261_0303 0.57 -2.4
287,953 + Ga0059261_0303 0.57 -0.5
287,953 + Ga0059261_0303 0.57 -0.4
287,953 + Ga0059261_0303 0.57 +0.2
287,953 + Ga0059261_0303 0.57 -0.5
287,953 + Ga0059261_0303 0.57 +0.1
287,953 + Ga0059261_0303 0.57 +0.2
287,953 + Ga0059261_0303 0.57 -0.0
287,953 + Ga0059261_0303 0.57 +1.0
287,953 + Ga0059261_0303 0.57 +1.0
287,953 + Ga0059261_0303 0.57 +0.5
287,953 + Ga0059261_0303 0.57 -0.4
287,953 + Ga0059261_0303 0.57 -0.8
287,953 + Ga0059261_0303 0.57 +0.1
287,953 + Ga0059261_0303 0.57 -0.1
287,953 + Ga0059261_0303 0.57 -1.0
287,953 + Ga0059261_0303 0.57 -0.9
287,953 + Ga0059261_0303 0.57 +0.7
287,954 - Ga0059261_0303 0.58 -1.3
287,954 - Ga0059261_0303 0.58 -0.0
287,954 - Ga0059261_0303 0.58 -0.2
287,954 - Ga0059261_0303 0.58 -0.1
287,954 - Ga0059261_0303 0.58 +0.4
287,954 - Ga0059261_0303 0.58 -1.2
287,954 - Ga0059261_0303 0.58 -0.2
287,954 - Ga0059261_0303 0.58 -0.4
287,954 - Ga0059261_0303 0.58 -0.9
287,954 - Ga0059261_0303 0.58 -1.2
287,954 - Ga0059261_0303 0.58 +0.7
287,954 - Ga0059261_0303 0.58 +0.4
287,954 - Ga0059261_0303 0.58 +1.1
287,954 - Ga0059261_0303 0.58 -0.9
287,954 - Ga0059261_0303 0.58 +3.8
287,993 - Ga0059261_0303 0.61 +1.0
288,018 - Ga0059261_0303 0.63 +0.7
288,062 + Ga0059261_0303 0.66 -0.3
288,063 - Ga0059261_0303 0.66 -0.5
288,063 - Ga0059261_0303 0.66 -0.6
288,063 - Ga0059261_0303 0.66 +0.0
288,063 - Ga0059261_0303 0.66 +0.1
288,257 + Ga0059261_0303 0.82 -0.2
288,257 + Ga0059261_0303 0.82 +0.2
288,257 + Ga0059261_0303 0.82 +0.2
288,257 + Ga0059261_0303 0.82 -0.2
288,257 + Ga0059261_0303 0.82 +0.6
288,257 + Ga0059261_0303 0.82 +0.3
288,257 + Ga0059261_0303 0.82 -1.1
288,258 - Ga0059261_0303 0.82 -0.8
288,258 - Ga0059261_0303 0.82 +0.7
288,258 - Ga0059261_0303 0.82 +0.7
288,293 + Ga0059261_0303 0.85 +0.7
288,293 + Ga0059261_0303 0.85 +1.0
288,293 + Ga0059261_0303 0.85 +0.3
288,294 - Ga0059261_0303 0.85 +2.0
288,294 - Ga0059261_0303 0.85 -0.1
288,294 - Ga0059261_0303 0.85 +0.2
288,294 - Ga0059261_0303 0.85 -0.2
288,294 - Ga0059261_0303 0.85 +1.6
288,314 + Ga0059261_0303 0.86 +0.7
288,314 + Ga0059261_0303 0.86 -0.3
288,315 - Ga0059261_0303 0.86 -0.2
288,315 - Ga0059261_0303 0.86 -1.0
288,315 - Ga0059261_0303 0.86 +0.3
288,341 + Ga0059261_0303 0.88 +0.1
288,341 + Ga0059261_0303 0.88 +0.2
288,342 - Ga0059261_0303 0.89 -0.2
288,342 - Ga0059261_0303 0.89 -0.1
288,342 - Ga0059261_0303 0.89 +0.1
288,411 - -0.4
288,482 + -0.5
288,482 + +0.5
288,482 + +0.3
288,483 - +1.0
288,483 - +0.7
288,483 - -1.4
288,539 - -2.1
288,542 + +0.5
288,543 - +0.2
288,543 - -0.5
288,543 - +0.6
288,651 + Ga0059261_0304 0.49 +0.0
288,652 - Ga0059261_0304 0.50 +0.7
288,806 - +0.8
288,806 - -0.3
288,872 + -0.6
288,873 - +0.2
288,873 - +1.7
288,917 + Ga0059261_0305 0.15 +0.5
288,918 - Ga0059261_0305 0.15 +0.6
288,929 + Ga0059261_0305 0.17 -0.2
288,930 - Ga0059261_0305 0.18 +0.0
289,128 - Ga0059261_0305 0.59 +0.0
289,128 - Ga0059261_0305 0.59 -0.1
289,184 + Ga0059261_0305 0.70 +0.5
289,185 - Ga0059261_0305 0.70 +1.0
289,185 - Ga0059261_0305 0.70 +0.3
289,240 + Ga0059261_0305 0.82 +0.8
289,289 + +0.2
289,289 + -0.4
289,289 + +0.2
289,289 + -0.1
289,289 + +0.3
289,290 - +0.2
289,290 - -0.2
289,290 - +0.2
289,290 - -0.4
289,325 + -0.0
289,325 + -0.3
289,325 + +0.3
289,326 - -1.0
289,387 + -1.1
289,387 + +0.3
289,387 + -0.2
289,387 + +0.4
289,387 + +0.2
289,387 + +0.1
289,387 + -1.0
289,387 + -0.7
289,388 - +0.5
289,388 - +0.0
289,388 - -1.0
289,388 - +1.0
289,388 - -0.5
289,388 - -0.4
289,388 - +1.3
289,388 - -0.2
289,388 - -0.1
289,388 - -2.1
289,388 - -0.8
289,526 - Ga0059261_0306 0.33 -0.4
289,526 - Ga0059261_0306 0.33 +1.0
289,538 + Ga0059261_0306 0.36 -0.4
289,538 + Ga0059261_0306 0.36 -0.4
289,538 + Ga0059261_0306 0.36 +0.8
289,539 - Ga0059261_0306 0.36 -0.3
289,622 + Ga0059261_0306 0.56 +0.6
289,622 + Ga0059261_0306 0.56 +1.0
289,622 + Ga0059261_0306 0.56 -0.7
289,622 + Ga0059261_0306 0.56 +0.2
289,622 + Ga0059261_0306 0.56 -0.5
289,623 - Ga0059261_0306 0.56 -0.5
289,623 - -0.3
289,623 - Ga0059261_0306 0.56 +1.1
289,711 + Ga0059261_0306 0.77 -0.0
289,712 - Ga0059261_0306 0.78 +0.1
289,712 - Ga0059261_0306 0.78 -1.4
289,716 + +0.5
289,716 + Ga0059261_0306 0.79 -1.5
289,717 - Ga0059261_0306 0.79 +0.0

Or see this region's nucleotide sequence