Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0278

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0277 and Ga0059261_0278 overlap by 4 nucleotidesGa0059261_0278 and Ga0059261_0279 are separated by 16 nucleotides Ga0059261_0277: Ga0059261_0277 - seryl-tRNA synthetase (EC 6.1.1.11), at 262,093 to 263,370 _0277 Ga0059261_0278: Ga0059261_0278 - 3'-nucleotidase (EC 3.1.3.6)/5'-nucleotidase (EC 3.1.3.5)/exopolyphosphatase (EC 3.6.1.11), at 263,367 to 264,131 _0278 Ga0059261_0279: Ga0059261_0279 - Peptidase family M23/LysM domain, at 264,148 to 265,218 _0279 Position (kb) 263 264 265Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 263.453 kb on + strand, within Ga0059261_0278at 263.453 kb on + strand, within Ga0059261_0278at 263.454 kb on - strand, within Ga0059261_0278at 263.599 kb on - strand, within Ga0059261_0278at 263.676 kb on + strand, within Ga0059261_0278at 263.677 kb on - strand, within Ga0059261_0278at 263.677 kb on - strandat 263.677 kb on - strandat 263.677 kb on - strand, within Ga0059261_0278at 263.749 kb on - strand, within Ga0059261_0278at 263.749 kb on - strand, within Ga0059261_0278at 263.749 kb on - strand, within Ga0059261_0278at 263.854 kb on + strand, within Ga0059261_0278at 263.854 kb on + strand, within Ga0059261_0278at 263.854 kb on + strand, within Ga0059261_0278at 263.855 kb on - strand, within Ga0059261_0278at 263.931 kb on + strand, within Ga0059261_0278at 263.957 kb on + strand, within Ga0059261_0278at 263.957 kb on + strand, within Ga0059261_0278at 263.957 kb on + strand, within Ga0059261_0278at 263.957 kb on + strand, within Ga0059261_0278at 263.958 kb on - strand, within Ga0059261_0278at 263.958 kb on - strand, within Ga0059261_0278at 263.958 kb on - strand, within Ga0059261_0278at 263.958 kb on - strand, within Ga0059261_0278at 263.958 kb on - strand, within Ga0059261_0278at 263.979 kb on + strand, within Ga0059261_0278at 263.979 kb on + strand, within Ga0059261_0278at 263.979 kb on + strand, within Ga0059261_0278at 263.980 kb on - strand, within Ga0059261_0278at 263.980 kb on - strand, within Ga0059261_0278at 263.980 kb on - strand, within Ga0059261_0278at 263.980 kb on - strand, within Ga0059261_0278at 263.980 kb on - strand, within Ga0059261_0278at 263.982 kb on + strand, within Ga0059261_0278at 263.982 kb on + strand, within Ga0059261_0278at 263.982 kb on + strand, within Ga0059261_0278at 263.983 kb on - strand, within Ga0059261_0278at 263.983 kb on - strand, within Ga0059261_0278at 263.983 kb on - strand, within Ga0059261_0278at 263.983 kb on - strand, within Ga0059261_0278at 264.011 kb on + strand, within Ga0059261_0278at 264.011 kb on + strand, within Ga0059261_0278at 264.011 kb on + strand, within Ga0059261_0278at 264.011 kb on + strand, within Ga0059261_0278at 264.011 kb on + strand, within Ga0059261_0278at 264.011 kb on + strand, within Ga0059261_0278at 264.012 kb on - strand, within Ga0059261_0278at 264.012 kb on - strand, within Ga0059261_0278at 264.012 kb on - strand, within Ga0059261_0278at 264.012 kb on - strandat 264.012 kb on - strand, within Ga0059261_0278at 264.012 kb on - strand, within Ga0059261_0278at 264.012 kb on - strand, within Ga0059261_0278at 264.012 kb on - strand, within Ga0059261_0278at 264.054 kb on + strand, within Ga0059261_0278at 264.054 kb on + strand, within Ga0059261_0278at 264.054 kb on + strand, within Ga0059261_0278at 264.054 kb on + strand, within Ga0059261_0278at 264.055 kb on - strandat 264.055 kb on - strandat 264.055 kb on - strandat 264.055 kb on - strandat 264.055 kb on - strandat 264.055 kb on - strandat 264.073 kb on + strandat 264.073 kb on + strandat 264.107 kb on + strandat 264.107 kb on + strandat 264.108 kb on - strandat 264.108 kb on - strandat 264.108 kb on - strandat 264.119 kb on + strandat 264.119 kb on + strandat 264.122 kb on - strandat 264.122 kb on - strandat 264.122 kb on - strandat 264.122 kb on - strandat 264.122 kb on - strandat 264.146 kb on + strandat 264.146 kb on + strandat 264.146 kb on + strandat 264.146 kb on + strandat 264.147 kb on - strandat 264.147 kb on - strandat 264.147 kb on - strandat 264.169 kb on + strandat 264.169 kb on + strandat 264.169 kb on + strandat 264.170 kb on - strandat 264.170 kb on - strandat 264.249 kb on + strandat 264.249 kb on + strandat 264.249 kb on + strandat 264.249 kb on + strandat 264.250 kb on - strandat 264.250 kb on - strandat 264.250 kb on - strandat 264.250 kb on - strandat 264.250 kb on - strandat 264.253 kb on + strandat 264.253 kb on + strandat 264.253 kb on + strandat 264.253 kb on + strandat 264.254 kb on - strandat 264.254 kb on - strandat 264.254 kb on - strandat 264.254 kb on - strandat 264.254 kb on - strandat 264.254 kb on - strandat 264.254 kb on - strandat 264.254 kb on - strandat 264.254 kb on - strandat 264.254 kb on - strandat 264.305 kb on + strand, within Ga0059261_0279at 264.305 kb on + strand, within Ga0059261_0279at 264.305 kb on + strand, within Ga0059261_0279at 264.305 kb on + strand, within Ga0059261_0279at 264.305 kb on + strand, within Ga0059261_0279at 264.305 kb on + strand, within Ga0059261_0279at 264.306 kb on - strand, within Ga0059261_0279at 264.306 kb on - strand, within Ga0059261_0279at 264.306 kb on - strand, within Ga0059261_0279at 264.306 kb on - strand, within Ga0059261_0279at 264.385 kb on + strand, within Ga0059261_0279at 264.385 kb on + strand, within Ga0059261_0279at 264.385 kb on + strand, within Ga0059261_0279at 264.385 kb on + strand, within Ga0059261_0279at 264.386 kb on - strand, within Ga0059261_0279at 264.386 kb on - strand, within Ga0059261_0279at 264.386 kb on - strand, within Ga0059261_0279at 264.386 kb on - strand, within Ga0059261_0279at 264.386 kb on - strand, within Ga0059261_0279at 264.527 kb on - strand, within Ga0059261_0279at 264.527 kb on - strand, within Ga0059261_0279at 264.574 kb on + strand, within Ga0059261_0279at 264.574 kb on + strand, within Ga0059261_0279at 264.625 kb on + strand, within Ga0059261_0279at 264.625 kb on + strand, within Ga0059261_0279at 264.625 kb on + strand, within Ga0059261_0279at 264.625 kb on + strand, within Ga0059261_0279at 264.625 kb on + strand, within Ga0059261_0279at 264.625 kb on + strand, within Ga0059261_0279at 264.626 kb on - strand, within Ga0059261_0279at 264.626 kb on - strand, within Ga0059261_0279at 264.626 kb on - strand, within Ga0059261_0279at 264.626 kb on - strand, within Ga0059261_0279at 264.626 kb on - strand, within Ga0059261_0279at 264.626 kb on - strand, within Ga0059261_0279at 264.626 kb on - strand, within Ga0059261_0279at 264.626 kb on - strand, within Ga0059261_0279at 264.627 kb on + strand, within Ga0059261_0279at 264.627 kb on + strand, within Ga0059261_0279at 264.627 kb on + strand, within Ga0059261_0279at 264.628 kb on - strand, within Ga0059261_0279at 264.628 kb on - strand, within Ga0059261_0279at 264.628 kb on - strand, within Ga0059261_0279at 264.979 kb on + strandat 264.979 kb on + strand, within Ga0059261_0279at 264.979 kb on + strand, within Ga0059261_0279at 264.979 kb on + strand, within Ga0059261_0279at 264.980 kb on - strand, within Ga0059261_0279at 264.980 kb on - strand, within Ga0059261_0279at 264.980 kb on - strand, within Ga0059261_0279at 264.980 kb on - strand, within Ga0059261_0279at 264.980 kb on - strand, within Ga0059261_0279at 264.980 kb on - strand, within Ga0059261_0279at 265.051 kb on + strand, within Ga0059261_0279at 265.051 kb on + strand, within Ga0059261_0279at 265.051 kb on + strand, within Ga0059261_0279at 265.051 kb on + strand, within Ga0059261_0279at 265.052 kb on - strand, within Ga0059261_0279

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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263,453 + Ga0059261_0278 0.11 +0.6
263,453 + Ga0059261_0278 0.11 +0.5
263,454 - Ga0059261_0278 0.11 -0.2
263,599 - Ga0059261_0278 0.30 +0.1
263,676 + Ga0059261_0278 0.40 +1.5
263,677 - Ga0059261_0278 0.41 +0.2
263,677 - +1.0
263,677 - +3.6
263,677 - Ga0059261_0278 0.41 +0.2
263,749 - Ga0059261_0278 0.50 +1.2
263,749 - Ga0059261_0278 0.50 +0.7
263,749 - Ga0059261_0278 0.50 +0.2
263,854 + Ga0059261_0278 0.64 +0.2
263,854 + Ga0059261_0278 0.64 -0.1
263,854 + Ga0059261_0278 0.64 -0.1
263,855 - Ga0059261_0278 0.64 +0.5
263,931 + Ga0059261_0278 0.74 +0.4
263,957 + Ga0059261_0278 0.77 -1.3
263,957 + Ga0059261_0278 0.77 -0.2
263,957 + Ga0059261_0278 0.77 +0.0
263,957 + Ga0059261_0278 0.77 +0.0
263,958 - Ga0059261_0278 0.77 -0.5
263,958 - Ga0059261_0278 0.77 -0.1
263,958 - Ga0059261_0278 0.77 -0.5
263,958 - Ga0059261_0278 0.77 -0.0
263,958 - Ga0059261_0278 0.77 +0.1
263,979 + Ga0059261_0278 0.80 -0.2
263,979 + Ga0059261_0278 0.80 -0.1
263,979 + Ga0059261_0278 0.80 -0.0
263,980 - Ga0059261_0278 0.80 -0.7
263,980 - Ga0059261_0278 0.80 -0.0
263,980 - Ga0059261_0278 0.80 +0.7
263,980 - Ga0059261_0278 0.80 -0.4
263,980 - Ga0059261_0278 0.80 +0.0
263,982 + Ga0059261_0278 0.80 -0.3
263,982 + Ga0059261_0278 0.80 -0.5
263,982 + Ga0059261_0278 0.80 +0.4
263,983 - Ga0059261_0278 0.81 -1.3
263,983 - Ga0059261_0278 0.81 +0.0
263,983 - Ga0059261_0278 0.81 +0.8
263,983 - Ga0059261_0278 0.81 +0.4
264,011 + Ga0059261_0278 0.84 -1.3
264,011 + Ga0059261_0278 0.84 -0.3
264,011 + Ga0059261_0278 0.84 +1.2
264,011 + Ga0059261_0278 0.84 +1.5
264,011 + Ga0059261_0278 0.84 +0.2
264,011 + Ga0059261_0278 0.84 +0.4
264,012 - Ga0059261_0278 0.84 -2.0
264,012 - Ga0059261_0278 0.84 -0.1
264,012 - Ga0059261_0278 0.84 +0.7
264,012 - +1.0
264,012 - Ga0059261_0278 0.84 -0.8
264,012 - Ga0059261_0278 0.84 -0.4
264,012 - Ga0059261_0278 0.84 +0.0
264,012 - Ga0059261_0278 0.84 -2.9
264,054 + Ga0059261_0278 0.90 +2.0
264,054 + Ga0059261_0278 0.90 +1.0
264,054 + Ga0059261_0278 0.90 +1.0
264,054 + Ga0059261_0278 0.90 -0.5
264,055 - +0.5
264,055 - -0.1
264,055 - -0.3
264,055 - -0.4
264,055 - -1.1
264,055 - -0.3
264,073 + +0.2
264,073 + -0.5
264,107 + -0.2
264,107 + -0.5
264,108 - -0.4
264,108 - -0.2
264,108 - +0.2
264,119 + +1.0
264,119 + -0.9
264,122 - +0.2
264,122 - -0.8
264,122 - +0.2
264,122 - +0.5
264,122 - -0.7
264,146 + -0.5
264,146 + -0.1
264,146 + -0.4
264,146 + +0.7
264,147 - +0.4
264,147 - +1.6
264,147 - -0.3
264,169 + -0.2
264,169 + -2.3
264,169 + -0.5
264,170 - -0.5
264,170 - -0.7
264,249 + -0.1
264,249 + +0.6
264,249 + +0.1
264,249 + +0.0
264,250 - +0.6
264,250 - -0.5
264,250 - +0.5
264,250 - -0.2
264,250 - -0.2
264,253 + -0.4
264,253 + +0.3
264,253 + -0.2
264,253 + -0.8
264,254 - +1.0
264,254 - -1.3
264,254 - +1.7
264,254 - +0.2
264,254 - -0.5
264,254 - +0.8
264,254 - -0.3
264,254 - +0.4
264,254 - -1.8
264,254 - +0.6
264,305 + Ga0059261_0279 0.15 +0.2
264,305 + Ga0059261_0279 0.15 +0.5
264,305 + Ga0059261_0279 0.15 +0.0
264,305 + Ga0059261_0279 0.15 -0.2
264,305 + Ga0059261_0279 0.15 +0.2
264,305 + Ga0059261_0279 0.15 -0.4
264,306 - Ga0059261_0279 0.15 +3.0
264,306 - Ga0059261_0279 0.15 +0.2
264,306 - Ga0059261_0279 0.15 +0.3
264,306 - Ga0059261_0279 0.15 +0.6
264,385 + Ga0059261_0279 0.22 +0.0
264,385 + Ga0059261_0279 0.22 +0.1
264,385 + Ga0059261_0279 0.22 +0.3
264,385 + Ga0059261_0279 0.22 +0.3
264,386 - Ga0059261_0279 0.22 +0.8
264,386 - Ga0059261_0279 0.22 +1.0
264,386 - Ga0059261_0279 0.22 -1.6
264,386 - Ga0059261_0279 0.22 +0.2
264,386 - Ga0059261_0279 0.22 -0.7
264,527 - Ga0059261_0279 0.35 +0.6
264,527 - Ga0059261_0279 0.35 -3.1
264,574 + Ga0059261_0279 0.40 -1.2
264,574 + Ga0059261_0279 0.40 +0.3
264,625 + Ga0059261_0279 0.45 -0.3
264,625 + Ga0059261_0279 0.45 -2.1
264,625 + Ga0059261_0279 0.45 +1.4
264,625 + Ga0059261_0279 0.45 +0.0
264,625 + Ga0059261_0279 0.45 -0.3
264,625 + Ga0059261_0279 0.45 -0.1
264,626 - Ga0059261_0279 0.45 +0.6
264,626 - Ga0059261_0279 0.45 +0.4
264,626 - Ga0059261_0279 0.45 -0.3
264,626 - Ga0059261_0279 0.45 -0.4
264,626 - Ga0059261_0279 0.45 -0.5
264,626 - Ga0059261_0279 0.45 -0.7
264,626 - Ga0059261_0279 0.45 -0.5
264,626 - Ga0059261_0279 0.45 -0.4
264,627 + Ga0059261_0279 0.45 +0.1
264,627 + Ga0059261_0279 0.45 +0.3
264,627 + Ga0059261_0279 0.45 -0.3
264,628 - Ga0059261_0279 0.45 +0.7
264,628 - Ga0059261_0279 0.45 -1.8
264,628 - Ga0059261_0279 0.45 +1.2
264,979 + +0.0
264,979 + Ga0059261_0279 0.78 +1.0
264,979 + Ga0059261_0279 0.78 -0.7
264,979 + Ga0059261_0279 0.78 +0.4
264,980 - Ga0059261_0279 0.78 +0.3
264,980 - Ga0059261_0279 0.78 +0.0
264,980 - Ga0059261_0279 0.78 +0.3
264,980 - Ga0059261_0279 0.78 +0.0
264,980 - Ga0059261_0279 0.78 -0.8
264,980 - Ga0059261_0279 0.78 -0.7
265,051 + Ga0059261_0279 0.84 +0.5
265,051 + Ga0059261_0279 0.84 -1.1
265,051 + Ga0059261_0279 0.84 -0.5
265,051 + Ga0059261_0279 0.84 -1.5
265,052 - Ga0059261_0279 0.84 -0.4

Or see this region's nucleotide sequence