Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0241 and Ga0059261_0242 are separated by 71 nucleotides Ga0059261_0242 and Ga0059261_0243 overlap by 4 nucleotides
Ga0059261_0241: Ga0059261_0241 - folylpolyglutamate synthase/dihydrofolate synthase, at 231,074 to 232,408
_0241
Ga0059261_0242: Ga0059261_0242 - hypothetical protein, at 232,480 to 232,908
_0242
Ga0059261_0243: Ga0059261_0243 - Major Facilitator Superfamily, at 232,905 to 234,578
_0243
Position (kb) 232
233 Strain fitness (log2 ratio) -2
-1
0
1
2 at 232.800 kb on + strand, within Ga0059261_0242 at 232.800 kb on + strand, within Ga0059261_0242 at 232.801 kb on - strand, within Ga0059261_0242 at 232.906 kb on + strand at 232.907 kb on - strand at 232.907 kb on - strand at 232.907 kb on - strand at 233.053 kb on + strand at 233.053 kb on + strand at 233.053 kb on + strand at 233.053 kb on + strand at 233.054 kb on - strand at 233.056 kb on + strand at 233.056 kb on + strand at 233.056 kb on + strand at 233.056 kb on + strand at 233.057 kb on - strand at 233.057 kb on - strand at 233.057 kb on - strand at 233.057 kb on - strand at 233.057 kb on - strand at 233.057 kb on - strand at 233.057 kb on - strand at 233.065 kb on + strand at 233.065 kb on + strand at 233.066 kb on - strand at 233.066 kb on - strand at 233.191 kb on + strand, within Ga0059261_0243 at 233.191 kb on + strand, within Ga0059261_0243 at 233.192 kb on - strand, within Ga0059261_0243 at 233.192 kb on - strand, within Ga0059261_0243 at 233.362 kb on + strand, within Ga0059261_0243 at 233.362 kb on + strand, within Ga0059261_0243 at 233.362 kb on + strand, within Ga0059261_0243 at 233.362 kb on + strand, within Ga0059261_0243 at 233.362 kb on + strand, within Ga0059261_0243 at 233.362 kb on + strand, within Ga0059261_0243 at 233.363 kb on - strand, within Ga0059261_0243 at 233.363 kb on - strand, within Ga0059261_0243 at 233.363 kb on - strand, within Ga0059261_0243 at 233.363 kb on - strand, within Ga0059261_0243 at 233.363 kb on - strand, within Ga0059261_0243 at 233.363 kb on - strand, within Ga0059261_0243 at 233.363 kb on - strand, within Ga0059261_0243 at 233.363 kb on - strand, within Ga0059261_0243 at 233.363 kb on - strand, within Ga0059261_0243 at 233.363 kb on - strand, within Ga0059261_0243 at 233.423 kb on - strand, within Ga0059261_0243 at 233.423 kb on - strand, within Ga0059261_0243 at 233.444 kb on + strand, within Ga0059261_0243 at 233.444 kb on + strand, within Ga0059261_0243 at 233.444 kb on + strand, within Ga0059261_0243 at 233.444 kb on + strand, within Ga0059261_0243 at 233.444 kb on + strand, within Ga0059261_0243 at 233.445 kb on - strand, within Ga0059261_0243 at 233.445 kb on - strand, within Ga0059261_0243 at 233.445 kb on - strand, within Ga0059261_0243 at 233.445 kb on - strand, within Ga0059261_0243 at 233.445 kb on - strand, within Ga0059261_0243 at 233.446 kb on + strand, within Ga0059261_0243 at 233.447 kb on - strand, within Ga0059261_0243 at 233.447 kb on - strand, within Ga0059261_0243 at 233.447 kb on - strand, within Ga0059261_0243 at 233.493 kb on - strand, within Ga0059261_0243 at 233.576 kb on + strand, within Ga0059261_0243 at 233.577 kb on - strand, within Ga0059261_0243 at 233.797 kb on + strand, within Ga0059261_0243 at 233.798 kb on - strand, within Ga0059261_0243 at 233.798 kb on - strand, within Ga0059261_0243 at 233.798 kb on - strand, within Ga0059261_0243 at 233.866 kb on + strand, within Ga0059261_0243 at 233.866 kb on + strand, within Ga0059261_0243 at 233.866 kb on + strand, within Ga0059261_0243 at 233.866 kb on + strand, within Ga0059261_0243 at 233.867 kb on - strand, within Ga0059261_0243 at 233.867 kb on - strand, within Ga0059261_0243 at 233.867 kb on - strand, within Ga0059261_0243 at 233.867 kb on - strand, within Ga0059261_0243 at 233.899 kb on + strand, within Ga0059261_0243 at 233.900 kb on - strand, within Ga0059261_0243 at 233.900 kb on - strand, within Ga0059261_0243
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 232,800 + Ga0059261_0242 0.75 -0.4 232,800 + Ga0059261_0242 0.75 -1.3 232,801 - Ga0059261_0242 0.75 -2.1 232,906 + -0.3 232,907 - -0.2 232,907 - +0.2 232,907 - -0.6 233,053 + -0.2 233,053 + -0.6 233,053 + -0.7 233,053 + +0.0 233,054 - -1.5 233,056 + +0.0 233,056 + -0.6 233,056 + -0.4 233,056 + +0.1 233,057 - -0.8 233,057 - +0.4 233,057 - +0.0 233,057 - -0.8 233,057 - +0.0 233,057 - -0.8 233,057 - -0.3 233,065 + -0.8 233,065 + +0.3 233,066 - +0.1 233,066 - +0.6 233,191 + Ga0059261_0243 0.17 -0.4 233,191 + Ga0059261_0243 0.17 +0.7 233,192 - Ga0059261_0243 0.17 -0.5 233,192 - Ga0059261_0243 0.17 -0.7 233,362 + Ga0059261_0243 0.27 +0.3 233,362 + Ga0059261_0243 0.27 -0.7 233,362 + Ga0059261_0243 0.27 +0.3 233,362 + Ga0059261_0243 0.27 -0.0 233,362 + Ga0059261_0243 0.27 +0.3 233,362 + Ga0059261_0243 0.27 -0.0 233,363 - Ga0059261_0243 0.27 +0.0 233,363 - Ga0059261_0243 0.27 -0.1 233,363 - Ga0059261_0243 0.27 +0.7 233,363 - Ga0059261_0243 0.27 -0.2 233,363 - Ga0059261_0243 0.27 -1.0 233,363 - Ga0059261_0243 0.27 -0.7 233,363 - Ga0059261_0243 0.27 +0.3 233,363 - Ga0059261_0243 0.27 -0.6 233,363 - Ga0059261_0243 0.27 +0.3 233,363 - Ga0059261_0243 0.27 +0.0 233,423 - Ga0059261_0243 0.31 -0.7 233,423 - Ga0059261_0243 0.31 -1.3 233,444 + Ga0059261_0243 0.32 -0.7 233,444 + Ga0059261_0243 0.32 +0.4 233,444 + Ga0059261_0243 0.32 +0.6 233,444 + Ga0059261_0243 0.32 +0.2 233,444 + Ga0059261_0243 0.32 -0.1 233,445 - Ga0059261_0243 0.32 -0.0 233,445 - Ga0059261_0243 0.32 +0.2 233,445 - Ga0059261_0243 0.32 -0.2 233,445 - Ga0059261_0243 0.32 +0.4 233,445 - Ga0059261_0243 0.32 -0.4 233,446 + Ga0059261_0243 0.32 +0.6 233,447 - Ga0059261_0243 0.32 +0.3 233,447 - Ga0059261_0243 0.32 -0.1 233,447 - Ga0059261_0243 0.32 -0.6 233,493 - Ga0059261_0243 0.35 -0.3 233,576 + Ga0059261_0243 0.40 -0.4 233,577 - Ga0059261_0243 0.40 -0.2 233,797 + Ga0059261_0243 0.53 +1.7 233,798 - Ga0059261_0243 0.53 -0.1 233,798 - Ga0059261_0243 0.53 +0.4 233,798 - Ga0059261_0243 0.53 +0.8 233,866 + Ga0059261_0243 0.57 -0.3 233,866 + Ga0059261_0243 0.57 +1.9 233,866 + Ga0059261_0243 0.57 -0.1 233,866 + Ga0059261_0243 0.57 -0.1 233,867 - Ga0059261_0243 0.57 +0.1 233,867 - Ga0059261_0243 0.57 -1.2 233,867 - Ga0059261_0243 0.57 -0.6 233,867 - Ga0059261_0243 0.57 +0.0 233,899 + Ga0059261_0243 0.59 -0.3 233,900 - Ga0059261_0243 0.59 -0.3 233,900 - Ga0059261_0243 0.59 -1.0
Or see this region's nucleotide sequence