Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0239

Experiment: Chloramphenicol 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0238 and Ga0059261_0239 overlap by 4 nucleotidesGa0059261_0239 and Ga0059261_0240 overlap by 4 nucleotidesGa0059261_0240 and Ga0059261_0241 are separated by 14 nucleotides Ga0059261_0238: Ga0059261_0238 - tryptophan synthase, beta subunit, at 228,194 to 229,405 _0238 Ga0059261_0239: Ga0059261_0239 - tryptophan synthase, alpha chain (EC 4.2.1.20), at 229,402 to 230,202 _0239 Ga0059261_0240: Ga0059261_0240 - acetyl-CoA carboxylase, carboxyl transferase, beta subunit, at 230,199 to 231,059 _0240 Ga0059261_0241: Ga0059261_0241 - folylpolyglutamate synthase/dihydrofolate synthase, at 231,074 to 232,408 _0241 Position (kb) 229 230 231Strain fitness (log2 ratio) -1 0 1at 229.370 kb on + strandat 229.401 kb on + strandat 229.401 kb on + strandat 229.401 kb on + strandat 229.401 kb on + strandat 229.401 kb on + strandat 229.685 kb on + strand, within Ga0059261_0239at 229.915 kb on + strand, within Ga0059261_0239

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
remove
229,370 + +0.3
229,401 + +0.8
229,401 + +0.2
229,401 + +0.1
229,401 + +0.1
229,401 + -1.1
229,685 + Ga0059261_0239 0.35 +0.8
229,915 + Ga0059261_0239 0.64 -0.8

Or see this region's nucleotide sequence