Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0131

Experiment: Chloramphenicol 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0129 and Ga0059261_0130 are separated by 67 nucleotidesGa0059261_0130 and Ga0059261_0131 overlap by 4 nucleotidesGa0059261_0131 and Ga0059261_0132 are separated by 79 nucleotidesGa0059261_0132 and Ga0059261_0133 overlap by 1 nucleotides Ga0059261_0129: Ga0059261_0129 - MazG family protein, at 122,640 to 123,431 _0129 Ga0059261_0130: Ga0059261_0130 - Predicted lactoylglutathione lyase, at 123,499 to 123,888 _0130 Ga0059261_0131: Ga0059261_0131 - hypothetical protein, at 123,885 to 124,232 _0131 Ga0059261_0132: Ga0059261_0132 - Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 124,312 to 124,962 _0132 Ga0059261_0133: Ga0059261_0133 - GTP-binding protein HflX, at 124,962 to 126,254 _0133 Position (kb) 123 124 125Strain fitness (log2 ratio) -2 -1 0 1 2at 122.981 kb on + strand, within Ga0059261_0129at 122.981 kb on + strand, within Ga0059261_0129at 122.981 kb on + strand, within Ga0059261_0129at 122.981 kb on + strand, within Ga0059261_0129at 122.981 kb on + strand, within Ga0059261_0129at 122.981 kb on + strand, within Ga0059261_0129at 122.982 kb on - strand, within Ga0059261_0129at 122.982 kb on - strandat 123.429 kb on + strandat 123.429 kb on + strandat 123.430 kb on - strandat 123.430 kb on - strandat 123.467 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.509 kb on - strandat 123.509 kb on - strandat 123.509 kb on - strandat 123.553 kb on + strand, within Ga0059261_0130at 123.553 kb on + strand, within Ga0059261_0130at 123.553 kb on + strand, within Ga0059261_0130at 123.554 kb on - strand, within Ga0059261_0130at 123.554 kb on - strand, within Ga0059261_0130at 123.554 kb on - strand, within Ga0059261_0130at 123.554 kb on - strand, within Ga0059261_0130at 123.616 kb on + strand, within Ga0059261_0130at 123.617 kb on - strand, within Ga0059261_0130at 123.808 kb on + strand, within Ga0059261_0130at 123.808 kb on + strand, within Ga0059261_0130at 123.808 kb on + strand, within Ga0059261_0130at 123.808 kb on + strand, within Ga0059261_0130at 123.808 kb on + strand, within Ga0059261_0130at 123.808 kb on + strand, within Ga0059261_0130at 123.808 kb on + strand, within Ga0059261_0130at 123.809 kb on - strand, within Ga0059261_0130at 123.809 kb on - strand, within Ga0059261_0130at 123.809 kb on - strand, within Ga0059261_0130at 123.823 kb on + strand, within Ga0059261_0130at 123.823 kb on + strand, within Ga0059261_0130at 123.823 kb on + strand, within Ga0059261_0130at 123.823 kb on + strandat 123.824 kb on - strandat 123.824 kb on - strand, within Ga0059261_0130at 123.832 kb on + strand, within Ga0059261_0130at 123.832 kb on + strand, within Ga0059261_0130at 123.832 kb on + strand, within Ga0059261_0130at 123.832 kb on + strand, within Ga0059261_0130at 123.832 kb on + strand, within Ga0059261_0130at 123.832 kb on + strandat 123.832 kb on + strand, within Ga0059261_0130at 123.832 kb on + strand, within Ga0059261_0130at 123.833 kb on - strand, within Ga0059261_0130at 123.833 kb on - strand, within Ga0059261_0130at 123.833 kb on - strand, within Ga0059261_0130at 123.886 kb on + strandat 123.887 kb on - strandat 123.887 kb on - strandat 123.887 kb on - strandat 123.912 kb on + strandat 123.934 kb on + strand, within Ga0059261_0131at 123.934 kb on + strand, within Ga0059261_0131at 123.934 kb on + strand, within Ga0059261_0131at 123.934 kb on + strand, within Ga0059261_0131at 123.935 kb on - strand, within Ga0059261_0131at 123.935 kb on - strand, within Ga0059261_0131at 123.935 kb on - strand, within Ga0059261_0131at 124.081 kb on + strand, within Ga0059261_0131at 124.102 kb on + strand, within Ga0059261_0131at 124.102 kb on + strand, within Ga0059261_0131at 124.103 kb on - strand, within Ga0059261_0131at 124.109 kb on + strand, within Ga0059261_0131at 124.109 kb on + strand, within Ga0059261_0131at 124.109 kb on + strand, within Ga0059261_0131at 124.141 kb on + strand, within Ga0059261_0131at 124.142 kb on - strand, within Ga0059261_0131at 124.238 kb on + strandat 124.238 kb on + strandat 124.239 kb on - strandat 124.239 kb on - strandat 124.239 kb on - strandat 124.239 kb on - strandat 124.239 kb on - strandat 124.250 kb on + strandat 124.313 kb on + strandat 124.313 kb on + strandat 124.314 kb on - strandat 124.314 kb on - strandat 124.314 kb on - strandat 124.314 kb on - strandat 124.404 kb on + strand, within Ga0059261_0132at 124.404 kb on + strand, within Ga0059261_0132at 124.404 kb on + strand, within Ga0059261_0132at 124.404 kb on + strandat 124.404 kb on + strand, within Ga0059261_0132at 124.405 kb on - strand, within Ga0059261_0132at 124.405 kb on - strand, within Ga0059261_0132at 124.405 kb on - strand, within Ga0059261_0132at 124.405 kb on - strand, within Ga0059261_0132at 124.405 kb on - strand, within Ga0059261_0132at 124.405 kb on - strand, within Ga0059261_0132at 124.793 kb on + strand, within Ga0059261_0132at 124.793 kb on + strand, within Ga0059261_0132at 124.793 kb on + strand, within Ga0059261_0132at 124.793 kb on + strand, within Ga0059261_0132at 124.793 kb on + strand, within Ga0059261_0132at 124.793 kb on + strand, within Ga0059261_0132at 124.793 kb on + strand, within Ga0059261_0132at 124.793 kb on + strand, within Ga0059261_0132at 124.794 kb on - strand, within Ga0059261_0132at 124.794 kb on - strand, within Ga0059261_0132at 124.794 kb on - strand, within Ga0059261_0132at 124.794 kb on - strand, within Ga0059261_0132at 124.794 kb on - strand, within Ga0059261_0132at 124.794 kb on - strand, within Ga0059261_0132at 124.963 kb on + strandat 124.963 kb on + strandat 124.964 kb on - strandat 124.990 kb on + strandat 124.990 kb on + strandat 124.991 kb on - strandat 125.017 kb on + strandat 125.017 kb on + strandat 125.017 kb on + strandat 125.018 kb on - strandat 125.154 kb on - strand, within Ga0059261_0133

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
remove
122,981 + Ga0059261_0129 0.43 -0.5
122,981 + Ga0059261_0129 0.43 -0.8
122,981 + Ga0059261_0129 0.43 +0.6
122,981 + Ga0059261_0129 0.43 +0.1
122,981 + Ga0059261_0129 0.43 +0.1
122,981 + Ga0059261_0129 0.43 +0.0
122,982 - Ga0059261_0129 0.43 -0.2
122,982 - +1.3
123,429 + +2.0
123,429 + -1.2
123,430 - -0.1
123,430 - -1.6
123,467 + +0.2
123,508 + -2.6
123,508 + -1.3
123,508 + -0.4
123,508 + +0.8
123,508 + -1.3
123,508 + -0.3
123,508 + -0.7
123,508 + +0.2
123,508 + +0.5
123,508 + +0.1
123,508 + -0.5
123,509 - -1.2
123,509 - +0.4
123,509 - +0.0
123,553 + Ga0059261_0130 0.14 -0.2
123,553 + Ga0059261_0130 0.14 -0.1
123,553 + Ga0059261_0130 0.14 -2.0
123,554 - Ga0059261_0130 0.14 +0.3
123,554 - Ga0059261_0130 0.14 -0.4
123,554 - Ga0059261_0130 0.14 -0.4
123,554 - Ga0059261_0130 0.14 -1.2
123,616 + Ga0059261_0130 0.30 +0.0
123,617 - Ga0059261_0130 0.30 -0.2
123,808 + Ga0059261_0130 0.79 +0.4
123,808 + Ga0059261_0130 0.79 -0.1
123,808 + Ga0059261_0130 0.79 +0.5
123,808 + Ga0059261_0130 0.79 +0.0
123,808 + Ga0059261_0130 0.79 +0.2
123,808 + Ga0059261_0130 0.79 +0.1
123,808 + Ga0059261_0130 0.79 -1.3
123,809 - Ga0059261_0130 0.79 -0.8
123,809 - Ga0059261_0130 0.79 +0.2
123,809 - Ga0059261_0130 0.79 +0.2
123,823 + Ga0059261_0130 0.83 +0.3
123,823 + Ga0059261_0130 0.83 +0.6
123,823 + Ga0059261_0130 0.83 -0.3
123,823 + +1.0
123,824 - -0.6
123,824 - Ga0059261_0130 0.83 +0.7
123,832 + Ga0059261_0130 0.85 -0.6
123,832 + Ga0059261_0130 0.85 +0.1
123,832 + Ga0059261_0130 0.85 -0.4
123,832 + Ga0059261_0130 0.85 +2.2
123,832 + Ga0059261_0130 0.85 -1.0
123,832 + -0.3
123,832 + Ga0059261_0130 0.85 -0.2
123,832 + Ga0059261_0130 0.85 +0.6
123,833 - Ga0059261_0130 0.86 -0.9
123,833 - Ga0059261_0130 0.86 -0.9
123,833 - Ga0059261_0130 0.86 +1.6
123,886 + +0.1
123,887 - -0.4
123,887 - -1.6
123,887 - +2.0
123,912 + -0.7
123,934 + Ga0059261_0131 0.14 -1.7
123,934 + Ga0059261_0131 0.14 -0.8
123,934 + Ga0059261_0131 0.14 -0.2
123,934 + Ga0059261_0131 0.14 -0.6
123,935 - Ga0059261_0131 0.14 -2.2
123,935 - Ga0059261_0131 0.14 -1.0
123,935 - Ga0059261_0131 0.14 -0.2
124,081 + Ga0059261_0131 0.56 -2.4
124,102 + Ga0059261_0131 0.62 +0.4
124,102 + Ga0059261_0131 0.62 -1.2
124,103 - Ga0059261_0131 0.63 -0.8
124,109 + Ga0059261_0131 0.64 -0.8
124,109 + Ga0059261_0131 0.64 -0.6
124,109 + Ga0059261_0131 0.64 -1.2
124,141 + Ga0059261_0131 0.74 -0.9
124,142 - Ga0059261_0131 0.74 -2.0
124,238 + +0.4
124,238 + -0.4
124,239 - -0.1
124,239 - -0.4
124,239 - -0.3
124,239 - +1.2
124,239 - +0.1
124,250 + +0.4
124,313 + +0.3
124,313 + +0.7
124,314 - +1.0
124,314 - +1.0
124,314 - +0.0
124,314 - +0.7
124,404 + Ga0059261_0132 0.14 -0.2
124,404 + Ga0059261_0132 0.14 +1.0
124,404 + Ga0059261_0132 0.14 +0.1
124,404 + +1.0
124,404 + Ga0059261_0132 0.14 +0.2
124,405 - Ga0059261_0132 0.14 -1.3
124,405 - Ga0059261_0132 0.14 -0.2
124,405 - Ga0059261_0132 0.14 +0.6
124,405 - Ga0059261_0132 0.14 +0.3
124,405 - Ga0059261_0132 0.14 -0.8
124,405 - Ga0059261_0132 0.14 +0.3
124,793 + Ga0059261_0132 0.74 -0.7
124,793 + Ga0059261_0132 0.74 -0.2
124,793 + Ga0059261_0132 0.74 -0.3
124,793 + Ga0059261_0132 0.74 -0.8
124,793 + Ga0059261_0132 0.74 +0.0
124,793 + Ga0059261_0132 0.74 +0.2
124,793 + Ga0059261_0132 0.74 +0.1
124,793 + Ga0059261_0132 0.74 +0.1
124,794 - Ga0059261_0132 0.74 +0.4
124,794 - Ga0059261_0132 0.74 +0.2
124,794 - Ga0059261_0132 0.74 -2.4
124,794 - Ga0059261_0132 0.74 +0.4
124,794 - Ga0059261_0132 0.74 -0.2
124,794 - Ga0059261_0132 0.74 -0.3
124,963 + +0.6
124,963 + -0.2
124,964 - +0.4
124,990 + -1.1
124,990 + -1.0
124,991 - -0.1
125,017 + -1.4
125,017 + -1.3
125,017 + +1.6
125,018 - -1.3
125,154 - Ga0059261_0133 0.15 -0.1

Or see this region's nucleotide sequence