Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0037

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0036 and Ga0059261_0037 are separated by 244 nucleotidesGa0059261_0037 and Ga0059261_0038 are separated by 87 nucleotidesGa0059261_0038 and Ga0059261_0039 are separated by 180 nucleotides Ga0059261_0036: Ga0059261_0036 - DNA gyrase, A subunit, at 29,115 to 31,856 _0036 Ga0059261_0037: Ga0059261_0037 - hypothetical protein, at 32,101 to 33,363 _0037 Ga0059261_0038: Ga0059261_0038 - Transcriptional regulators, at 33,451 to 33,915 _0038 Ga0059261_0039: Ga0059261_0039 - His Kinase A (phospho-acceptor) domain, at 34,096 to 35,907 _0039 Position (kb) 32 33 34Strain fitness (log2 ratio) -2 -1 0 1at 31.901 kb on - strandat 31.901 kb on - strandat 32.045 kb on + strandat 32.045 kb on + strandat 32.046 kb on - strandat 32.046 kb on - strandat 32.046 kb on - strandat 32.048 kb on + strandat 32.048 kb on + strandat 32.048 kb on + strandat 32.049 kb on - strandat 32.049 kb on - strandat 32.049 kb on - strandat 32.073 kb on - strandat 32.086 kb on + strandat 32.087 kb on - strandat 32.521 kb on + strand, within Ga0059261_0037at 32.522 kb on - strand, within Ga0059261_0037at 32.526 kb on + strand, within Ga0059261_0037at 32.527 kb on - strand, within Ga0059261_0037at 32.527 kb on - strand, within Ga0059261_0037at 32.548 kb on + strand, within Ga0059261_0037at 32.548 kb on + strand, within Ga0059261_0037at 32.548 kb on + strand, within Ga0059261_0037at 32.548 kb on + strand, within Ga0059261_0037at 32.548 kb on + strand, within Ga0059261_0037at 32.549 kb on - strand, within Ga0059261_0037at 32.549 kb on - strand, within Ga0059261_0037at 32.549 kb on - strand, within Ga0059261_0037at 32.549 kb on - strand, within Ga0059261_0037at 32.549 kb on - strand, within Ga0059261_0037at 32.690 kb on - strand, within Ga0059261_0037at 32.690 kb on - strand, within Ga0059261_0037at 32.713 kb on + strand, within Ga0059261_0037at 32.713 kb on + strand, within Ga0059261_0037at 32.713 kb on + strand, within Ga0059261_0037at 32.713 kb on + strand, within Ga0059261_0037at 32.713 kb on + strand, within Ga0059261_0037at 32.714 kb on - strand, within Ga0059261_0037at 32.714 kb on - strand, within Ga0059261_0037at 32.714 kb on - strand, within Ga0059261_0037at 32.771 kb on - strand, within Ga0059261_0037at 32.809 kb on + strand, within Ga0059261_0037at 32.810 kb on - strand, within Ga0059261_0037at 32.810 kb on - strand, within Ga0059261_0037at 32.810 kb on - strand, within Ga0059261_0037at 32.914 kb on + strand, within Ga0059261_0037at 32.923 kb on + strand, within Ga0059261_0037at 32.923 kb on + strand, within Ga0059261_0037at 32.923 kb on + strand, within Ga0059261_0037at 32.924 kb on - strand, within Ga0059261_0037at 32.924 kb on - strand, within Ga0059261_0037at 32.924 kb on - strand, within Ga0059261_0037at 32.924 kb on - strand, within Ga0059261_0037at 32.924 kb on - strand, within Ga0059261_0037at 33.034 kb on + strand, within Ga0059261_0037at 33.034 kb on + strand, within Ga0059261_0037at 33.034 kb on + strand, within Ga0059261_0037at 33.034 kb on + strand, within Ga0059261_0037at 33.034 kb on + strand, within Ga0059261_0037at 33.034 kb on + strand, within Ga0059261_0037at 33.035 kb on - strand, within Ga0059261_0037at 33.035 kb on - strand, within Ga0059261_0037at 33.035 kb on - strand, within Ga0059261_0037at 33.035 kb on - strand, within Ga0059261_0037at 33.143 kb on - strand, within Ga0059261_0037at 33.160 kb on + strand, within Ga0059261_0037at 33.161 kb on - strand, within Ga0059261_0037at 33.161 kb on - strand, within Ga0059261_0037at 33.624 kb on - strand, within Ga0059261_0038at 33.624 kb on - strand, within Ga0059261_0038at 33.726 kb on + strand, within Ga0059261_0038at 33.726 kb on + strand, within Ga0059261_0038at 33.727 kb on - strand, within Ga0059261_0038at 33.727 kb on - strand, within Ga0059261_0038at 33.727 kb on - strand, within Ga0059261_0038at 33.727 kb on - strand, within Ga0059261_0038at 33.727 kb on - strand, within Ga0059261_0038at 33.727 kb on - strand, within Ga0059261_0038at 33.728 kb on + strand, within Ga0059261_0038at 33.762 kb on - strand, within Ga0059261_0038at 33.968 kb on + strandat 33.969 kb on - strandat 33.969 kb on - strandat 34.275 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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31,901 - -1.0
31,901 - -0.1
32,045 + +0.4
32,045 + +0.0
32,046 - +0.4
32,046 - +0.3
32,046 - +0.6
32,048 + -0.2
32,048 + -0.4
32,048 + +0.1
32,049 - +0.3
32,049 - +0.5
32,049 - +1.0
32,073 - -2.1
32,086 + -0.4
32,087 - -0.5
32,521 + Ga0059261_0037 0.33 +1.3
32,522 - Ga0059261_0037 0.33 +0.8
32,526 + Ga0059261_0037 0.34 -2.0
32,527 - Ga0059261_0037 0.34 -0.9
32,527 - Ga0059261_0037 0.34 -1.6
32,548 + Ga0059261_0037 0.35 +0.8
32,548 + Ga0059261_0037 0.35 +0.2
32,548 + Ga0059261_0037 0.35 -1.6
32,548 + Ga0059261_0037 0.35 +1.0
32,548 + Ga0059261_0037 0.35 -0.5
32,549 - Ga0059261_0037 0.35 +0.8
32,549 - Ga0059261_0037 0.35 -1.6
32,549 - Ga0059261_0037 0.35 -0.4
32,549 - Ga0059261_0037 0.35 +1.5
32,549 - Ga0059261_0037 0.35 +0.8
32,690 - Ga0059261_0037 0.47 -0.5
32,690 - Ga0059261_0037 0.47 +0.7
32,713 + Ga0059261_0037 0.48 -1.0
32,713 + Ga0059261_0037 0.48 -0.4
32,713 + Ga0059261_0037 0.48 -0.4
32,713 + Ga0059261_0037 0.48 -1.2
32,713 + Ga0059261_0037 0.48 -0.8
32,714 - Ga0059261_0037 0.49 -0.8
32,714 - Ga0059261_0037 0.49 +1.2
32,714 - Ga0059261_0037 0.49 -0.3
32,771 - Ga0059261_0037 0.53 -2.0
32,809 + Ga0059261_0037 0.56 -1.2
32,810 - Ga0059261_0037 0.56 -0.3
32,810 - Ga0059261_0037 0.56 -0.9
32,810 - Ga0059261_0037 0.56 -0.4
32,914 + Ga0059261_0037 0.64 -0.7
32,923 + Ga0059261_0037 0.65 -0.2
32,923 + Ga0059261_0037 0.65 -1.3
32,923 + Ga0059261_0037 0.65 -0.3
32,924 - Ga0059261_0037 0.65 -1.2
32,924 - Ga0059261_0037 0.65 -1.1
32,924 - Ga0059261_0037 0.65 -0.4
32,924 - Ga0059261_0037 0.65 +1.5
32,924 - Ga0059261_0037 0.65 -0.1
33,034 + Ga0059261_0037 0.74 -0.4
33,034 + Ga0059261_0037 0.74 -0.6
33,034 + Ga0059261_0037 0.74 +0.0
33,034 + Ga0059261_0037 0.74 -0.3
33,034 + Ga0059261_0037 0.74 -1.3
33,034 + Ga0059261_0037 0.74 -1.3
33,035 - Ga0059261_0037 0.74 +0.0
33,035 - Ga0059261_0037 0.74 +0.4
33,035 - Ga0059261_0037 0.74 +0.1
33,035 - Ga0059261_0037 0.74 +1.4
33,143 - Ga0059261_0037 0.83 -0.3
33,160 + Ga0059261_0037 0.84 +0.7
33,161 - Ga0059261_0037 0.84 -0.8
33,161 - Ga0059261_0037 0.84 -0.1
33,624 - Ga0059261_0038 0.37 -0.7
33,624 - Ga0059261_0038 0.37 -0.3
33,726 + Ga0059261_0038 0.59 +0.5
33,726 + Ga0059261_0038 0.59 -1.1
33,727 - Ga0059261_0038 0.59 +0.8
33,727 - Ga0059261_0038 0.59 +0.0
33,727 - Ga0059261_0038 0.59 +0.4
33,727 - Ga0059261_0038 0.59 +1.3
33,727 - Ga0059261_0038 0.59 -0.1
33,727 - Ga0059261_0038 0.59 -0.3
33,728 + Ga0059261_0038 0.60 +0.4
33,762 - Ga0059261_0038 0.67 +0.3
33,968 + -0.3
33,969 - +1.0
33,969 - +0.4
34,275 + -1.6

Or see this region's nucleotide sequence