Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0033 and Ga0059261_0034 are separated by 73 nucleotides Ga0059261_0034 and Ga0059261_0035 overlap by 58 nucleotides Ga0059261_0035 and Ga0059261_0036 are separated by 129 nucleotides
Ga0059261_0033: Ga0059261_0033 - transcriptional regulator, AsnC family, at 27,522 to 27,974
_0033
Ga0059261_0034: Ga0059261_0034 - Putative threonine efflux protein, at 28,048 to 28,698
_0034
Ga0059261_0035: Ga0059261_0035 - Uncharacterized protein conserved in bacteria, at 28,641 to 28,985
_0035
Ga0059261_0036: Ga0059261_0036 - DNA gyrase, A subunit, at 29,115 to 31,856
_0036
Position (kb) 28
29 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 27.655 kb on + strand, within Ga0059261_0033 at 27.655 kb on + strand, within Ga0059261_0033 at 27.655 kb on + strand at 27.655 kb on + strand, within Ga0059261_0033 at 27.767 kb on + strand, within Ga0059261_0033 at 27.767 kb on + strand at 27.767 kb on + strand, within Ga0059261_0033 at 27.768 kb on - strand, within Ga0059261_0033 at 27.769 kb on + strand, within Ga0059261_0033 at 27.769 kb on + strand, within Ga0059261_0033 at 27.769 kb on + strand, within Ga0059261_0033 at 27.769 kb on + strand, within Ga0059261_0033 at 27.770 kb on - strand, within Ga0059261_0033 at 27.770 kb on - strand, within Ga0059261_0033 at 27.770 kb on - strand, within Ga0059261_0033 at 27.770 kb on - strand, within Ga0059261_0033 at 27.770 kb on - strand, within Ga0059261_0033 at 27.770 kb on - strand, within Ga0059261_0033 at 27.770 kb on - strand, within Ga0059261_0033 at 27.770 kb on - strand, within Ga0059261_0033 at 27.943 kb on - strand at 27.943 kb on - strand at 27.948 kb on - strand at 28.205 kb on + strand, within Ga0059261_0034 at 28.206 kb on - strand, within Ga0059261_0034 at 28.206 kb on - strand, within Ga0059261_0034 at 28.206 kb on - strand, within Ga0059261_0034 at 28.206 kb on - strand, within Ga0059261_0034 at 28.294 kb on + strand, within Ga0059261_0034 at 28.294 kb on + strand, within Ga0059261_0034 at 28.295 kb on - strand, within Ga0059261_0034 at 28.303 kb on + strand, within Ga0059261_0034 at 28.303 kb on + strand, within Ga0059261_0034 at 28.304 kb on - strand, within Ga0059261_0034 at 28.444 kb on + strand, within Ga0059261_0034 at 28.444 kb on + strand, within Ga0059261_0034 at 28.444 kb on + strand, within Ga0059261_0034 at 28.444 kb on + strand, within Ga0059261_0034 at 28.445 kb on - strand, within Ga0059261_0034 at 28.445 kb on - strand, within Ga0059261_0034 at 28.445 kb on - strand, within Ga0059261_0034 at 28.445 kb on - strand, within Ga0059261_0034 at 28.445 kb on - strand, within Ga0059261_0034 at 28.627 kb on + strand, within Ga0059261_0034 at 28.696 kb on + strand at 28.697 kb on - strand at 28.697 kb on - strand at 28.773 kb on + strand at 28.774 kb on - strand, within Ga0059261_0035 at 28.885 kb on + strand at 28.885 kb on + strand, within Ga0059261_0035 at 28.886 kb on - strand, within Ga0059261_0035 at 28.886 kb on - strand, within Ga0059261_0035 at 28.886 kb on - strand, within Ga0059261_0035 at 28.966 kb on + strand at 28.966 kb on + strand at 28.966 kb on + strand at 28.966 kb on + strand at 28.976 kb on + strand at 28.976 kb on + strand at 28.977 kb on - strand at 28.977 kb on - strand at 29.116 kb on + strand at 29.116 kb on + strand at 29.116 kb on + strand at 29.117 kb on - strand at 29.117 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 27,655 + Ga0059261_0033 0.29 -0.3 27,655 + Ga0059261_0033 0.29 +0.6 27,655 + +0.7 27,655 + Ga0059261_0033 0.29 -1.2 27,767 + Ga0059261_0033 0.54 -2.9 27,767 + -1.0 27,767 + Ga0059261_0033 0.54 +0.1 27,768 - Ga0059261_0033 0.54 -0.0 27,769 + Ga0059261_0033 0.55 -0.1 27,769 + Ga0059261_0033 0.55 -0.6 27,769 + Ga0059261_0033 0.55 -0.3 27,769 + Ga0059261_0033 0.55 +3.0 27,770 - Ga0059261_0033 0.55 +0.3 27,770 - Ga0059261_0033 0.55 -0.1 27,770 - Ga0059261_0033 0.55 -0.8 27,770 - Ga0059261_0033 0.55 -0.2 27,770 - Ga0059261_0033 0.55 -0.6 27,770 - Ga0059261_0033 0.55 +0.0 27,770 - Ga0059261_0033 0.55 +0.1 27,770 - Ga0059261_0033 0.55 +0.3 27,943 - +1.3 27,943 - +1.0 27,948 - +0.2 28,205 + Ga0059261_0034 0.24 -0.6 28,206 - Ga0059261_0034 0.24 -0.4 28,206 - Ga0059261_0034 0.24 +0.2 28,206 - Ga0059261_0034 0.24 -0.9 28,206 - Ga0059261_0034 0.24 +0.5 28,294 + Ga0059261_0034 0.38 -0.2 28,294 + Ga0059261_0034 0.38 +0.0 28,295 - Ga0059261_0034 0.38 +0.6 28,303 + Ga0059261_0034 0.39 +0.3 28,303 + Ga0059261_0034 0.39 +0.3 28,304 - Ga0059261_0034 0.39 +0.7 28,444 + Ga0059261_0034 0.61 -0.7 28,444 + Ga0059261_0034 0.61 +0.5 28,444 + Ga0059261_0034 0.61 +1.0 28,444 + Ga0059261_0034 0.61 -1.4 28,445 - Ga0059261_0034 0.61 +2.4 28,445 - Ga0059261_0034 0.61 +0.6 28,445 - Ga0059261_0034 0.61 -0.4 28,445 - Ga0059261_0034 0.61 -0.6 28,445 - Ga0059261_0034 0.61 -1.4 28,627 + Ga0059261_0034 0.89 +0.0 28,696 + -1.2 28,697 - -0.1 28,697 - +0.4 28,773 + -0.3 28,774 - Ga0059261_0035 0.39 +0.4 28,885 + +2.0 28,885 + Ga0059261_0035 0.71 -0.7 28,886 - Ga0059261_0035 0.71 -1.0 28,886 - Ga0059261_0035 0.71 -0.2 28,886 - Ga0059261_0035 0.71 -1.9 28,966 + -0.4 28,966 + -2.8 28,966 + -1.6 28,966 + +0.0 28,976 + +1.3 28,976 + +0.2 28,977 - +0.0 28,977 - +1.2 29,116 + -0.3 29,116 + +0.2 29,116 + -0.2 29,117 - -1.0 29,117 - +0.0
Or see this region's nucleotide sequence