Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22400 and EX31_RS22405 are separated by 56 nucleotides EX31_RS22405 and EX31_RS22410 are separated by 43 nucleotides EX31_RS22410 and EX31_RS25630 are separated by 252 nucleotides EX31_RS25630 and EX31_RS22415 are separated by 256 nucleotides
EX31_RS22400: EX31_RS22400 - hypothetical protein, at 231,596 to 232,612
_RS22400
EX31_RS22405: EX31_RS22405 - hypothetical protein, at 232,669 to 232,881
_RS22405
EX31_RS22410: EX31_RS22410 - hypothetical protein, at 232,925 to 233,263
_RS22410
EX31_RS25630: EX31_RS25630 - DUF3606 domain-containing protein, at 233,516 to 233,692
_RS25630
EX31_RS22415: EX31_RS22415 - NCS2 family permease, at 233,949 to 235,298
_RS22415
Position (kb) 233
234 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 232.663 kb on + strand at 232.788 kb on + strand, within EX31_RS22405 at 232.788 kb on + strand, within EX31_RS22405 at 232.789 kb on - strand, within EX31_RS22405 at 232.791 kb on + strand, within EX31_RS22405 at 232.791 kb on + strand, within EX31_RS22405 at 232.791 kb on + strand, within EX31_RS22405 at 232.791 kb on + strand, within EX31_RS22405 at 232.846 kb on + strand, within EX31_RS22405 at 232.846 kb on + strand, within EX31_RS22405 at 232.846 kb on + strand, within EX31_RS22405 at 232.846 kb on + strand, within EX31_RS22405 at 232.847 kb on - strand, within EX31_RS22405 at 232.847 kb on - strand, within EX31_RS22405 at 232.847 kb on - strand, within EX31_RS22405 at 232.847 kb on - strand, within EX31_RS22405 at 232.847 kb on - strand, within EX31_RS22405 at 232.874 kb on + strand at 232.874 kb on + strand at 232.874 kb on + strand at 232.875 kb on - strand at 232.875 kb on - strand at 232.875 kb on - strand at 232.910 kb on + strand at 232.916 kb on + strand at 232.917 kb on - strand at 232.926 kb on + strand at 232.926 kb on + strand at 232.927 kb on - strand at 232.927 kb on - strand at 232.927 kb on - strand at 232.927 kb on - strand at 232.927 kb on - strand at 232.927 kb on - strand at 232.985 kb on + strand, within EX31_RS22410 at 232.985 kb on + strand, within EX31_RS22410 at 232.986 kb on - strand, within EX31_RS22410 at 232.986 kb on - strand, within EX31_RS22410 at 232.989 kb on + strand, within EX31_RS22410 at 232.989 kb on + strand, within EX31_RS22410 at 232.989 kb on + strand, within EX31_RS22410 at 232.989 kb on + strand, within EX31_RS22410 at 232.989 kb on + strand, within EX31_RS22410 at 232.989 kb on + strand, within EX31_RS22410 at 232.989 kb on + strand, within EX31_RS22410 at 232.990 kb on - strand, within EX31_RS22410 at 232.990 kb on - strand, within EX31_RS22410 at 232.990 kb on - strand, within EX31_RS22410 at 232.990 kb on - strand, within EX31_RS22410 at 232.990 kb on - strand, within EX31_RS22410 at 232.990 kb on - strand, within EX31_RS22410 at 232.990 kb on - strand, within EX31_RS22410 at 232.990 kb on - strand, within EX31_RS22410 at 232.990 kb on - strand, within EX31_RS22410 at 232.990 kb on - strand, within EX31_RS22410 at 232.990 kb on - strand, within EX31_RS22410 at 232.990 kb on - strand, within EX31_RS22410 at 232.990 kb on - strand, within EX31_RS22410 at 233.005 kb on + strand, within EX31_RS22410 at 233.045 kb on + strand, within EX31_RS22410 at 233.045 kb on + strand, within EX31_RS22410 at 233.045 kb on + strand, within EX31_RS22410 at 233.046 kb on - strand, within EX31_RS22410 at 233.046 kb on - strand, within EX31_RS22410 at 233.046 kb on - strand, within EX31_RS22410 at 233.046 kb on - strand, within EX31_RS22410 at 233.047 kb on + strand, within EX31_RS22410 at 233.047 kb on + strand, within EX31_RS22410 at 233.047 kb on + strand, within EX31_RS22410 at 233.048 kb on - strand, within EX31_RS22410 at 233.048 kb on - strand, within EX31_RS22410 at 233.048 kb on - strand, within EX31_RS22410 at 233.048 kb on - strand, within EX31_RS22410 at 233.048 kb on - strand, within EX31_RS22410 at 233.055 kb on - strand, within EX31_RS22410 at 233.075 kb on - strand, within EX31_RS22410 at 233.075 kb on - strand, within EX31_RS22410 at 233.087 kb on - strand, within EX31_RS22410 at 233.087 kb on - strand, within EX31_RS22410 at 233.095 kb on + strand, within EX31_RS22410 at 233.096 kb on - strand, within EX31_RS22410 at 233.120 kb on + strand, within EX31_RS22410 at 233.148 kb on - strand, within EX31_RS22410 at 233.169 kb on + strand, within EX31_RS22410 at 233.169 kb on + strand, within EX31_RS22410 at 233.229 kb on + strand, within EX31_RS22410 at 233.229 kb on + strand, within EX31_RS22410 at 233.230 kb on - strand at 233.230 kb on - strand at 233.230 kb on - strand at 233.245 kb on + strand at 233.264 kb on - strand at 233.286 kb on + strand at 233.286 kb on + strand at 233.286 kb on + strand at 233.296 kb on + strand at 233.297 kb on - strand at 233.301 kb on + strand at 233.302 kb on - strand at 233.353 kb on + strand at 233.353 kb on + strand at 233.354 kb on - strand at 233.386 kb on + strand at 233.386 kb on + strand at 233.386 kb on + strand at 233.387 kb on - strand at 233.387 kb on - strand at 233.388 kb on + strand at 233.388 kb on + strand at 233.388 kb on + strand at 233.389 kb on - strand at 233.389 kb on - strand at 233.389 kb on - strand at 233.389 kb on - strand at 233.389 kb on - strand at 233.389 kb on - strand at 233.414 kb on + strand at 233.414 kb on + strand at 233.415 kb on - strand at 233.415 kb on - strand at 233.415 kb on - strand at 233.434 kb on + strand at 233.434 kb on + strand at 233.434 kb on + strand at 233.435 kb on - strand at 233.435 kb on - strand at 233.438 kb on + strand at 233.438 kb on + strand at 233.438 kb on + strand at 233.439 kb on - strand at 233.448 kb on + strand at 233.449 kb on - strand at 233.469 kb on + strand at 233.469 kb on + strand at 233.470 kb on - strand at 233.488 kb on + strand at 233.488 kb on + strand at 233.488 kb on + strand at 233.488 kb on + strand at 233.488 kb on + strand at 233.488 kb on + strand at 233.488 kb on + strand at 233.488 kb on + strand at 233.488 kb on + strand at 233.489 kb on - strand at 233.489 kb on - strand at 233.489 kb on - strand at 233.489 kb on - strand at 233.489 kb on - strand at 233.489 kb on - strand at 233.489 kb on - strand at 233.489 kb on - strand at 233.500 kb on - strand at 233.520 kb on + strand at 233.521 kb on - strand at 233.521 kb on - strand at 233.524 kb on + strand at 233.524 kb on + strand at 233.524 kb on + strand at 233.524 kb on + strand at 233.524 kb on + strand at 233.524 kb on + strand at 233.525 kb on - strand at 233.525 kb on - strand at 233.525 kb on - strand at 233.525 kb on - strand at 233.525 kb on - strand at 233.529 kb on + strand at 233.529 kb on + strand at 233.529 kb on + strand at 233.529 kb on + strand at 233.529 kb on + strand at 233.530 kb on - strand at 233.530 kb on - strand at 233.530 kb on - strand at 233.530 kb on - strand at 233.552 kb on - strand, within EX31_RS25630 at 233.591 kb on + strand, within EX31_RS25630 at 233.591 kb on + strand, within EX31_RS25630 at 233.591 kb on + strand, within EX31_RS25630 at 233.592 kb on - strand, within EX31_RS25630 at 233.670 kb on + strand, within EX31_RS25630 at 233.682 kb on + strand at 233.683 kb on - strand at 233.687 kb on - strand at 233.691 kb on - strand at 233.694 kb on + strand at 233.694 kb on + strand at 233.694 kb on + strand at 233.694 kb on + strand at 233.695 kb on - strand at 233.695 kb on - strand at 233.848 kb on + strand at 233.849 kb on - strand at 233.880 kb on - strand at 233.975 kb on - strand at 233.977 kb on + strand at 233.977 kb on + strand at 233.999 kb on + strand at 233.999 kb on + strand at 234.000 kb on - strand at 234.000 kb on - strand at 234.001 kb on + strand at 234.002 kb on - strand at 234.002 kb on - strand at 234.002 kb on - strand at 234.002 kb on - strand at 234.002 kb on - strand at 234.002 kb on - strand at 234.002 kb on - strand at 234.002 kb on - strand at 234.055 kb on + strand at 234.056 kb on - strand at 234.056 kb on - strand at 234.056 kb on - strand at 234.107 kb on + strand, within EX31_RS22415 at 234.108 kb on - strand, within EX31_RS22415 at 234.108 kb on - strand, within EX31_RS22415 at 234.154 kb on - strand, within EX31_RS22415 at 234.248 kb on + strand, within EX31_RS22415 at 234.252 kb on + strand, within EX31_RS22415 at 234.252 kb on + strand, within EX31_RS22415 at 234.253 kb on - strand, within EX31_RS22415 at 234.253 kb on - strand, within EX31_RS22415 at 234.273 kb on + strand, within EX31_RS22415 at 234.336 kb on + strand, within EX31_RS22415 at 234.336 kb on + strand, within EX31_RS22415 at 234.337 kb on - strand, within EX31_RS22415 at 234.337 kb on - strand, within EX31_RS22415 at 234.337 kb on - strand, within EX31_RS22415 at 234.425 kb on + strand, within EX31_RS22415 at 234.426 kb on - strand, within EX31_RS22415 at 234.485 kb on + strand, within EX31_RS22415 at 234.486 kb on - strand, within EX31_RS22415 at 234.486 kb on - strand, within EX31_RS22415 at 234.486 kb on - strand, within EX31_RS22415 at 234.512 kb on + strand, within EX31_RS22415 at 234.512 kb on + strand, within EX31_RS22415 at 234.542 kb on + strand, within EX31_RS22415 at 234.542 kb on + strand, within EX31_RS22415 at 234.543 kb on - strand, within EX31_RS22415 at 234.551 kb on + strand, within EX31_RS22415 at 234.633 kb on + strand, within EX31_RS22415 at 234.634 kb on - strand, within EX31_RS22415 at 234.634 kb on - strand, within EX31_RS22415 at 234.666 kb on + strand, within EX31_RS22415 at 234.687 kb on - strand, within EX31_RS22415 at 234.687 kb on - strand, within EX31_RS22415
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 232,663 + +0.9 232,788 + EX31_RS22405 0.56 +0.6 232,788 + EX31_RS22405 0.56 +0.8 232,789 - EX31_RS22405 0.56 +0.7 232,791 + EX31_RS22405 0.57 -1.7 232,791 + EX31_RS22405 0.57 -1.0 232,791 + EX31_RS22405 0.57 +1.0 232,791 + EX31_RS22405 0.57 -1.6 232,846 + EX31_RS22405 0.83 -0.8 232,846 + EX31_RS22405 0.83 +1.1 232,846 + EX31_RS22405 0.83 +2.0 232,846 + EX31_RS22405 0.83 -2.5 232,847 - EX31_RS22405 0.84 +0.8 232,847 - EX31_RS22405 0.84 -0.0 232,847 - EX31_RS22405 0.84 -0.0 232,847 - EX31_RS22405 0.84 +0.4 232,847 - EX31_RS22405 0.84 +2.0 232,874 + +0.4 232,874 + -1.0 232,874 + -1.4 232,875 - +1.0 232,875 - -0.0 232,875 - -1.0 232,910 + +2.0 232,916 + -3.2 232,917 - +1.3 232,926 + +0.1 232,926 + +2.0 232,927 - -0.2 232,927 - +1.5 232,927 - +2.0 232,927 - -1.8 232,927 - +0.8 232,927 - +0.3 232,985 + EX31_RS22410 0.18 +0.5 232,985 + EX31_RS22410 0.18 -1.3 232,986 - EX31_RS22410 0.18 +0.6 232,986 - EX31_RS22410 0.18 +0.1 232,989 + EX31_RS22410 0.19 -0.3 232,989 + EX31_RS22410 0.19 +0.3 232,989 + EX31_RS22410 0.19 -0.5 232,989 + EX31_RS22410 0.19 +1.5 232,989 + EX31_RS22410 0.19 +0.8 232,989 + EX31_RS22410 0.19 +1.0 232,989 + EX31_RS22410 0.19 +1.6 232,990 - EX31_RS22410 0.19 -0.1 232,990 - EX31_RS22410 0.19 +0.8 232,990 - EX31_RS22410 0.19 -1.0 232,990 - EX31_RS22410 0.19 -0.6 232,990 - EX31_RS22410 0.19 +1.2 232,990 - EX31_RS22410 0.19 -0.6 232,990 - EX31_RS22410 0.19 +1.0 232,990 - EX31_RS22410 0.19 -0.0 232,990 - EX31_RS22410 0.19 +0.4 232,990 - EX31_RS22410 0.19 -0.5 232,990 - EX31_RS22410 0.19 +1.5 232,990 - EX31_RS22410 0.19 -2.0 232,990 - EX31_RS22410 0.19 +1.0 233,005 + EX31_RS22410 0.24 -2.2 233,045 + EX31_RS22410 0.35 -0.4 233,045 + EX31_RS22410 0.35 +1.0 233,045 + EX31_RS22410 0.35 -0.4 233,046 - EX31_RS22410 0.36 +1.4 233,046 - EX31_RS22410 0.36 +1.0 233,046 - EX31_RS22410 0.36 +0.8 233,046 - EX31_RS22410 0.36 +0.8 233,047 + EX31_RS22410 0.36 +0.8 233,047 + EX31_RS22410 0.36 -0.3 233,047 + EX31_RS22410 0.36 +2.3 233,048 - EX31_RS22410 0.36 +1.3 233,048 - EX31_RS22410 0.36 +1.6 233,048 - EX31_RS22410 0.36 +0.4 233,048 - EX31_RS22410 0.36 +1.9 233,048 - EX31_RS22410 0.36 +0.3 233,055 - EX31_RS22410 0.38 -0.2 233,075 - EX31_RS22410 0.44 -0.5 233,075 - EX31_RS22410 0.44 +1.2 233,087 - EX31_RS22410 0.48 +1.7 233,087 - EX31_RS22410 0.48 -0.0 233,095 + EX31_RS22410 0.50 -0.4 233,096 - EX31_RS22410 0.50 +0.3 233,120 + EX31_RS22410 0.58 -2.4 233,148 - EX31_RS22410 0.66 +0.8 233,169 + EX31_RS22410 0.72 +2.6 233,169 + EX31_RS22410 0.72 +0.4 233,229 + EX31_RS22410 0.90 -0.5 233,229 + EX31_RS22410 0.90 +1.3 233,230 - +0.9 233,230 - -0.8 233,230 - -3.0 233,245 + +0.6 233,264 - +2.2 233,286 + -1.3 233,286 + -1.6 233,286 + -1.8 233,296 + +0.2 233,297 - -0.4 233,301 + -0.3 233,302 - +1.0 233,353 + +1.4 233,353 + -1.0 233,354 - +1.0 233,386 + -2.0 233,386 + -0.5 233,386 + -1.3 233,387 - -0.6 233,387 - -2.0 233,388 + -2.3 233,388 + +1.3 233,388 + -1.2 233,389 - -0.5 233,389 - +1.0 233,389 - -0.4 233,389 - -1.0 233,389 - +0.4 233,389 - +1.2 233,414 + -0.0 233,414 + +0.7 233,415 - +0.5 233,415 - +0.2 233,415 - +1.0 233,434 + -0.3 233,434 + -1.2 233,434 + -0.3 233,435 - -2.0 233,435 - -0.4 233,438 + -2.0 233,438 + +1.0 233,438 + +1.0 233,439 - -0.6 233,448 + +0.4 233,449 - -0.2 233,469 + -1.1 233,469 + +0.6 233,470 - -1.0 233,488 + -1.3 233,488 + +1.8 233,488 + +1.2 233,488 + -0.1 233,488 + +3.7 233,488 + -0.6 233,488 + -0.1 233,488 + +0.4 233,488 + +0.7 233,489 - +0.4 233,489 - -3.0 233,489 - +0.3 233,489 - +1.2 233,489 - +1.0 233,489 - -2.0 233,489 - -0.6 233,489 - +0.5 233,500 - -0.2 233,520 + +0.1 233,521 - +1.2 233,521 - +0.7 233,524 + -0.3 233,524 + +0.3 233,524 + +0.9 233,524 + -0.4 233,524 + +0.4 233,524 + +0.3 233,525 - +1.2 233,525 - -0.0 233,525 - +0.7 233,525 - +0.4 233,525 - -0.1 233,529 + +1.0 233,529 + -1.1 233,529 + +0.7 233,529 + -1.3 233,529 + +0.7 233,530 - +1.2 233,530 - +0.8 233,530 - +1.6 233,530 - -1.2 233,552 - EX31_RS25630 0.20 -1.3 233,591 + EX31_RS25630 0.42 -0.6 233,591 + EX31_RS25630 0.42 -0.8 233,591 + EX31_RS25630 0.42 -0.7 233,592 - EX31_RS25630 0.43 -2.3 233,670 + EX31_RS25630 0.87 -1.3 233,682 + -0.6 233,683 - +0.5 233,687 - +0.7 233,691 - +1.0 233,694 + +0.1 233,694 + -0.1 233,694 + +2.2 233,694 + +0.6 233,695 - -0.6 233,695 - +0.1 233,848 + +1.3 233,849 - -0.6 233,880 - +1.0 233,975 - +0.0 233,977 + +0.6 233,977 + -0.0 233,999 + -0.0 233,999 + -0.0 234,000 - +0.7 234,000 - -1.8 234,001 + +0.6 234,002 - -0.7 234,002 - -1.0 234,002 - -0.1 234,002 - +3.3 234,002 - +1.8 234,002 - -1.3 234,002 - +1.4 234,002 - +1.3 234,055 + +3.0 234,056 - -1.3 234,056 - +1.9 234,056 - -2.2 234,107 + EX31_RS22415 0.12 -0.6 234,108 - EX31_RS22415 0.12 -0.2 234,108 - EX31_RS22415 0.12 -1.0 234,154 - EX31_RS22415 0.15 -0.8 234,248 + EX31_RS22415 0.22 +0.5 234,252 + EX31_RS22415 0.22 +1.6 234,252 + EX31_RS22415 0.22 +0.4 234,253 - EX31_RS22415 0.23 +1.0 234,253 - EX31_RS22415 0.23 -2.2 234,273 + EX31_RS22415 0.24 +1.8 234,336 + EX31_RS22415 0.29 -0.4 234,336 + EX31_RS22415 0.29 -1.8 234,337 - EX31_RS22415 0.29 -1.5 234,337 - EX31_RS22415 0.29 +0.1 234,337 - EX31_RS22415 0.29 +0.6 234,425 + EX31_RS22415 0.35 +0.1 234,426 - EX31_RS22415 0.35 -0.4 234,485 + EX31_RS22415 0.40 -2.3 234,486 - EX31_RS22415 0.40 -1.3 234,486 - EX31_RS22415 0.40 +0.8 234,486 - EX31_RS22415 0.40 +0.9 234,512 + EX31_RS22415 0.42 +1.7 234,512 + EX31_RS22415 0.42 -0.8 234,542 + EX31_RS22415 0.44 -1.0 234,542 + EX31_RS22415 0.44 -1.0 234,543 - EX31_RS22415 0.44 +2.2 234,551 + EX31_RS22415 0.45 -0.8 234,633 + EX31_RS22415 0.51 -0.8 234,634 - EX31_RS22415 0.51 +1.0 234,634 - EX31_RS22415 0.51 -0.6 234,666 + EX31_RS22415 0.53 +1.5 234,687 - EX31_RS22415 0.55 -1.0 234,687 - EX31_RS22415 0.55 +1.0
Or see this region's nucleotide sequence