Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23815 and EX31_RS23820 are separated by 177 nucleotides EX31_RS23820 and EX31_RS23825 are separated by 139 nucleotides EX31_RS23825 and EX31_RS23830 are separated by 206 nucleotides
EX31_RS23815: EX31_RS23815 - hypothetical protein, at 530,614 to 531,252
_RS23815
EX31_RS23820: EX31_RS23820 - YIP1 family protein, at 531,430 to 532,020
_RS23820
EX31_RS23825: EX31_RS23825 - D-lactate dehydrogenase, at 532,160 to 533,851
_RS23825
EX31_RS23830: EX31_RS23830 - phosphonate ABC transporter ATP-binding protein, at 534,058 to 534,894
_RS23830
Position (kb) 532
533
534 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 531.174 kb on + strand, within EX31_RS23815 at 531.241 kb on + strand at 531.241 kb on + strand at 531.241 kb on + strand at 531.242 kb on - strand at 531.282 kb on - strand at 531.325 kb on - strand at 531.325 kb on - strand at 531.327 kb on + strand at 531.327 kb on + strand at 531.328 kb on - strand at 531.329 kb on + strand at 531.329 kb on + strand at 531.330 kb on - strand at 531.330 kb on - strand at 531.330 kb on - strand at 531.330 kb on - strand at 531.350 kb on + strand at 531.351 kb on - strand at 531.414 kb on + strand at 531.414 kb on + strand at 531.415 kb on - strand at 531.415 kb on - strand at 531.415 kb on - strand at 531.517 kb on + strand, within EX31_RS23820 at 531.518 kb on - strand, within EX31_RS23820 at 531.518 kb on - strand, within EX31_RS23820 at 531.640 kb on + strand, within EX31_RS23820 at 531.640 kb on + strand, within EX31_RS23820 at 531.641 kb on - strand, within EX31_RS23820 at 531.641 kb on - strand, within EX31_RS23820 at 531.641 kb on - strand, within EX31_RS23820 at 531.641 kb on - strand, within EX31_RS23820 at 531.642 kb on + strand, within EX31_RS23820 at 531.658 kb on + strand, within EX31_RS23820 at 531.659 kb on - strand, within EX31_RS23820 at 531.700 kb on - strand, within EX31_RS23820 at 531.700 kb on - strand, within EX31_RS23820 at 531.703 kb on + strand, within EX31_RS23820 at 531.722 kb on - strand, within EX31_RS23820 at 531.766 kb on + strand, within EX31_RS23820 at 531.874 kb on + strand, within EX31_RS23820 at 531.875 kb on - strand, within EX31_RS23820 at 531.875 kb on - strand, within EX31_RS23820 at 531.875 kb on - strand, within EX31_RS23820 at 531.888 kb on + strand, within EX31_RS23820 at 531.889 kb on - strand, within EX31_RS23820 at 531.889 kb on - strand, within EX31_RS23820 at 531.960 kb on - strand, within EX31_RS23820 at 531.963 kb on - strand at 531.990 kb on + strand at 531.990 kb on + strand at 531.990 kb on + strand at 531.991 kb on - strand at 531.991 kb on - strand at 532.013 kb on + strand at 532.013 kb on + strand at 532.013 kb on + strand at 532.014 kb on - strand at 532.024 kb on - strand at 532.024 kb on - strand at 532.035 kb on + strand at 532.035 kb on + strand at 532.035 kb on + strand at 532.035 kb on + strand at 532.035 kb on + strand at 532.036 kb on - strand at 532.036 kb on - strand at 532.036 kb on - strand at 532.077 kb on + strand at 532.077 kb on + strand at 532.077 kb on + strand at 532.077 kb on + strand at 532.078 kb on - strand at 532.078 kb on - strand at 532.078 kb on - strand at 532.078 kb on - strand at 532.082 kb on + strand at 532.082 kb on + strand at 532.082 kb on + strand at 532.082 kb on + strand at 532.086 kb on + strand at 532.086 kb on + strand at 532.087 kb on - strand at 532.087 kb on - strand at 532.162 kb on - strand at 532.162 kb on - strand at 532.162 kb on - strand at 532.162 kb on - strand at 532.237 kb on - strand at 532.266 kb on + strand at 532.267 kb on - strand at 532.282 kb on + strand at 532.283 kb on - strand at 532.283 kb on - strand at 532.283 kb on - strand at 532.326 kb on - strand at 532.326 kb on - strand at 532.374 kb on + strand, within EX31_RS23825 at 532.374 kb on + strand, within EX31_RS23825 at 532.375 kb on - strand, within EX31_RS23825 at 532.375 kb on - strand, within EX31_RS23825 at 532.375 kb on - strand, within EX31_RS23825 at 532.375 kb on - strand, within EX31_RS23825 at 532.530 kb on - strand, within EX31_RS23825 at 532.694 kb on + strand, within EX31_RS23825 at 532.694 kb on + strand, within EX31_RS23825 at 532.694 kb on + strand, within EX31_RS23825 at 532.694 kb on + strand, within EX31_RS23825 at 532.694 kb on + strand, within EX31_RS23825 at 532.695 kb on - strand, within EX31_RS23825 at 532.695 kb on - strand, within EX31_RS23825 at 532.729 kb on + strand, within EX31_RS23825 at 532.813 kb on + strand, within EX31_RS23825 at 532.813 kb on + strand, within EX31_RS23825 at 532.922 kb on - strand, within EX31_RS23825 at 532.930 kb on + strand, within EX31_RS23825 at 532.944 kb on + strand, within EX31_RS23825 at 532.944 kb on + strand, within EX31_RS23825 at 532.944 kb on + strand, within EX31_RS23825 at 532.944 kb on + strand, within EX31_RS23825 at 532.945 kb on - strand, within EX31_RS23825 at 532.945 kb on - strand, within EX31_RS23825 at 532.945 kb on - strand, within EX31_RS23825 at 532.994 kb on + strand, within EX31_RS23825 at 533.032 kb on - strand, within EX31_RS23825 at 533.032 kb on - strand, within EX31_RS23825 at 533.120 kb on + strand, within EX31_RS23825 at 533.187 kb on + strand, within EX31_RS23825 at 533.239 kb on - strand, within EX31_RS23825 at 533.343 kb on + strand, within EX31_RS23825 at 533.344 kb on - strand, within EX31_RS23825 at 533.361 kb on + strand, within EX31_RS23825 at 533.362 kb on - strand, within EX31_RS23825 at 533.399 kb on - strand, within EX31_RS23825 at 533.399 kb on - strand, within EX31_RS23825 at 533.401 kb on + strand, within EX31_RS23825 at 533.494 kb on + strand, within EX31_RS23825 at 533.494 kb on + strand, within EX31_RS23825 at 533.495 kb on - strand, within EX31_RS23825 at 533.496 kb on + strand, within EX31_RS23825 at 533.496 kb on + strand, within EX31_RS23825 at 533.496 kb on + strand, within EX31_RS23825 at 533.496 kb on + strand, within EX31_RS23825 at 533.497 kb on - strand, within EX31_RS23825 at 533.497 kb on - strand, within EX31_RS23825 at 533.497 kb on - strand, within EX31_RS23825 at 533.595 kb on + strand, within EX31_RS23825 at 533.596 kb on - strand, within EX31_RS23825 at 533.596 kb on - strand, within EX31_RS23825 at 533.596 kb on - strand, within EX31_RS23825 at 533.651 kb on - strand, within EX31_RS23825 at 533.651 kb on - strand, within EX31_RS23825 at 533.651 kb on - strand, within EX31_RS23825 at 533.720 kb on + strand at 533.720 kb on + strand at 533.721 kb on - strand at 533.882 kb on + strand at 533.883 kb on - strand at 533.883 kb on - strand at 533.883 kb on - strand at 533.883 kb on - strand at 533.889 kb on - strand at 533.889 kb on - strand at 533.894 kb on + strand at 533.895 kb on - strand at 533.895 kb on - strand at 533.895 kb on - strand at 533.895 kb on - strand at 533.895 kb on - strand at 533.895 kb on - strand at 533.902 kb on - strand at 533.902 kb on - strand at 533.902 kb on - strand at 533.909 kb on - strand at 533.909 kb on - strand at 533.909 kb on - strand at 533.913 kb on + strand at 533.914 kb on - strand at 533.936 kb on + strand at 533.940 kb on + strand at 533.940 kb on + strand at 533.941 kb on - strand at 533.941 kb on - strand at 533.950 kb on + strand at 533.950 kb on + strand at 533.984 kb on - strand at 534.005 kb on - strand at 534.005 kb on - strand at 534.017 kb on + strand at 534.017 kb on + strand at 534.018 kb on - strand at 534.076 kb on - strand at 534.076 kb on - strand at 534.225 kb on - strand, within EX31_RS23830 at 534.247 kb on - strand, within EX31_RS23830 at 534.270 kb on + strand, within EX31_RS23830 at 534.302 kb on + strand, within EX31_RS23830 at 534.302 kb on + strand, within EX31_RS23830 at 534.302 kb on + strand, within EX31_RS23830 at 534.302 kb on + strand, within EX31_RS23830 at 534.302 kb on + strand, within EX31_RS23830 at 534.303 kb on - strand, within EX31_RS23830 at 534.303 kb on - strand, within EX31_RS23830 at 534.303 kb on - strand, within EX31_RS23830 at 534.303 kb on - strand, within EX31_RS23830 at 534.303 kb on - strand, within EX31_RS23830 at 534.303 kb on - strand, within EX31_RS23830 at 534.305 kb on + strand, within EX31_RS23830 at 534.305 kb on + strand, within EX31_RS23830 at 534.305 kb on + strand, within EX31_RS23830 at 534.306 kb on - strand, within EX31_RS23830 at 534.349 kb on - strand, within EX31_RS23830 at 534.444 kb on - strand, within EX31_RS23830 at 534.772 kb on + strand, within EX31_RS23830 at 534.773 kb on - strand, within EX31_RS23830 at 534.837 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 531,174 + EX31_RS23815 0.88 +1.1 531,241 + -1.1 531,241 + +0.7 531,241 + +0.6 531,242 - -0.5 531,282 - -0.7 531,325 - -0.1 531,325 - -0.1 531,327 + +0.3 531,327 + -1.5 531,328 - +1.4 531,329 + -0.3 531,329 + +1.9 531,330 - -1.3 531,330 - -0.1 531,330 - +0.7 531,330 - +1.9 531,350 + -1.7 531,351 - -0.1 531,414 + +0.7 531,414 + +0.9 531,415 - +0.4 531,415 - -1.1 531,415 - -0.1 531,517 + EX31_RS23820 0.15 +0.9 531,518 - EX31_RS23820 0.15 +2.3 531,518 - EX31_RS23820 0.15 +1.9 531,640 + EX31_RS23820 0.36 +1.6 531,640 + EX31_RS23820 0.36 +1.4 531,641 - EX31_RS23820 0.36 +0.0 531,641 - EX31_RS23820 0.36 -2.3 531,641 - EX31_RS23820 0.36 +0.9 531,641 - EX31_RS23820 0.36 +1.2 531,642 + EX31_RS23820 0.36 -0.7 531,658 + EX31_RS23820 0.39 -1.9 531,659 - EX31_RS23820 0.39 +1.6 531,700 - EX31_RS23820 0.46 -1.8 531,700 - EX31_RS23820 0.46 +0.6 531,703 + EX31_RS23820 0.46 -2.1 531,722 - EX31_RS23820 0.49 +1.1 531,766 + EX31_RS23820 0.57 -1.0 531,874 + EX31_RS23820 0.75 -1.5 531,875 - EX31_RS23820 0.75 -1.1 531,875 - EX31_RS23820 0.75 +0.5 531,875 - EX31_RS23820 0.75 -0.5 531,888 + EX31_RS23820 0.77 -0.6 531,889 - EX31_RS23820 0.78 -0.7 531,889 - EX31_RS23820 0.78 -0.1 531,960 - EX31_RS23820 0.90 -0.1 531,963 - -0.9 531,990 + -1.1 531,990 + +1.6 531,990 + +0.7 531,991 - -2.3 531,991 - -0.4 532,013 + -0.5 532,013 + +1.9 532,013 + +1.3 532,014 - +0.9 532,024 - -1.7 532,024 - -1.7 532,035 + -0.7 532,035 + +0.9 532,035 + -0.1 532,035 + -1.1 532,035 + +1.1 532,036 - -0.1 532,036 - -0.5 532,036 - +0.6 532,077 + +1.4 532,077 + -0.6 532,077 + -0.6 532,077 + -0.5 532,078 - +1.0 532,078 - +0.9 532,078 - +0.4 532,078 - +1.0 532,082 + -0.6 532,082 + +2.4 532,082 + +2.4 532,082 + +1.6 532,086 + +3.2 532,086 + -0.5 532,087 - -0.1 532,087 - +0.1 532,162 - +0.9 532,162 - -0.9 532,162 - -0.1 532,162 - +0.3 532,237 - +0.9 532,266 + +0.9 532,267 - +1.3 532,282 + -0.7 532,283 - -1.9 532,283 - -3.1 532,283 - -3.0 532,326 - -0.1 532,326 - +1.4 532,374 + EX31_RS23825 0.13 +1.3 532,374 + EX31_RS23825 0.13 +1.5 532,375 - EX31_RS23825 0.13 -1.5 532,375 - EX31_RS23825 0.13 -1.5 532,375 - EX31_RS23825 0.13 -0.7 532,375 - EX31_RS23825 0.13 -0.7 532,530 - EX31_RS23825 0.22 -1.5 532,694 + EX31_RS23825 0.32 -2.1 532,694 + EX31_RS23825 0.32 -0.7 532,694 + EX31_RS23825 0.32 +0.1 532,694 + EX31_RS23825 0.32 -0.9 532,694 + EX31_RS23825 0.32 -1.9 532,695 - EX31_RS23825 0.32 -0.7 532,695 - EX31_RS23825 0.32 +0.2 532,729 + EX31_RS23825 0.34 -0.1 532,813 + EX31_RS23825 0.39 -2.3 532,813 + EX31_RS23825 0.39 -0.8 532,922 - EX31_RS23825 0.45 -1.9 532,930 + EX31_RS23825 0.46 -1.7 532,944 + EX31_RS23825 0.46 -2.3 532,944 + EX31_RS23825 0.46 +2.9 532,944 + EX31_RS23825 0.46 +0.9 532,944 + EX31_RS23825 0.46 +0.2 532,945 - EX31_RS23825 0.46 -0.9 532,945 - EX31_RS23825 0.46 +1.2 532,945 - EX31_RS23825 0.46 -2.1 532,994 + EX31_RS23825 0.49 +0.1 533,032 - EX31_RS23825 0.52 -0.9 533,032 - EX31_RS23825 0.52 +0.3 533,120 + EX31_RS23825 0.57 -0.7 533,187 + EX31_RS23825 0.61 +2.9 533,239 - EX31_RS23825 0.64 -1.5 533,343 + EX31_RS23825 0.70 -1.5 533,344 - EX31_RS23825 0.70 -2.1 533,361 + EX31_RS23825 0.71 -0.7 533,362 - EX31_RS23825 0.71 -1.1 533,399 - EX31_RS23825 0.73 +0.6 533,399 - EX31_RS23825 0.73 +2.5 533,401 + EX31_RS23825 0.73 -1.7 533,494 + EX31_RS23825 0.79 +0.9 533,494 + EX31_RS23825 0.79 -2.6 533,495 - EX31_RS23825 0.79 -3.5 533,496 + EX31_RS23825 0.79 -2.1 533,496 + EX31_RS23825 0.79 +2.7 533,496 + EX31_RS23825 0.79 -1.9 533,496 + EX31_RS23825 0.79 +1.5 533,497 - EX31_RS23825 0.79 -0.7 533,497 - EX31_RS23825 0.79 -2.1 533,497 - EX31_RS23825 0.79 +0.9 533,595 + EX31_RS23825 0.85 -0.7 533,596 - EX31_RS23825 0.85 -1.1 533,596 - EX31_RS23825 0.85 -2.1 533,596 - EX31_RS23825 0.85 -1.1 533,651 - EX31_RS23825 0.88 -1.9 533,651 - EX31_RS23825 0.88 +0.9 533,651 - EX31_RS23825 0.88 +0.9 533,720 + -0.7 533,720 + -0.1 533,721 - -2.7 533,882 + -1.5 533,883 - -0.1 533,883 - +2.0 533,883 - -2.3 533,883 - +0.6 533,889 - -0.1 533,889 - +0.9 533,894 + -0.7 533,895 - +0.9 533,895 - -3.5 533,895 - +0.2 533,895 - +0.5 533,895 - +3.0 533,895 - +0.9 533,902 - +0.5 533,902 - +1.9 533,902 - +1.6 533,909 - +0.5 533,909 - +1.9 533,909 - +1.8 533,913 + +1.2 533,914 - -1.9 533,936 + -1.7 533,940 + -2.1 533,940 + -1.5 533,941 - +2.0 533,941 - -0.7 533,950 + +0.9 533,950 + -0.7 533,984 - +1.6 534,005 - +0.7 534,005 - -0.1 534,017 + -0.6 534,017 + +0.9 534,018 - +1.9 534,076 - +0.9 534,076 - +1.1 534,225 - EX31_RS23830 0.20 +0.3 534,247 - EX31_RS23830 0.23 -0.5 534,270 + EX31_RS23830 0.25 -1.4 534,302 + EX31_RS23830 0.29 +1.3 534,302 + EX31_RS23830 0.29 -1.1 534,302 + EX31_RS23830 0.29 +2.0 534,302 + EX31_RS23830 0.29 +1.5 534,302 + EX31_RS23830 0.29 -0.4 534,303 - EX31_RS23830 0.29 +0.6 534,303 - EX31_RS23830 0.29 +2.5 534,303 - EX31_RS23830 0.29 -1.1 534,303 - EX31_RS23830 0.29 -1.1 534,303 - EX31_RS23830 0.29 -0.5 534,303 - EX31_RS23830 0.29 -1.5 534,305 + EX31_RS23830 0.30 +1.9 534,305 + EX31_RS23830 0.30 -0.1 534,305 + EX31_RS23830 0.30 +1.9 534,306 - EX31_RS23830 0.30 +0.9 534,349 - EX31_RS23830 0.35 +0.1 534,444 - EX31_RS23830 0.46 +0.4 534,772 + EX31_RS23830 0.85 +0.9 534,773 - EX31_RS23830 0.85 -1.1 534,837 - -0.4
Or see this region's nucleotide sequence