Strain Fitness in Rahnella sp. WP5 around EX31_RS23580

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23575 and EX31_RS23580 are separated by 19 nucleotidesEX31_RS23580 and EX31_RS23585 are separated by 200 nucleotides EX31_RS23575: EX31_RS23575 - galactose-1-phosphate uridylyltransferase, at 480,207 to 481,256 _RS23575 EX31_RS23580: EX31_RS23580 - UDP-glucose 4-epimerase GalE, at 481,276 to 482,292 _RS23580 EX31_RS23585: EX31_RS23585 - LysR family transcriptional regulator, at 482,493 to 483,440 _RS23585 Position (kb) 481 482 483Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 480.583 kb on + strand, within EX31_RS23575at 480.655 kb on + strand, within EX31_RS23575at 480.655 kb on + strand, within EX31_RS23575at 480.691 kb on + strand, within EX31_RS23575at 480.692 kb on - strand, within EX31_RS23575at 480.692 kb on - strand, within EX31_RS23575at 481.022 kb on - strand, within EX31_RS23575at 481.022 kb on - strand, within EX31_RS23575at 481.031 kb on + strand, within EX31_RS23575at 481.032 kb on - strand, within EX31_RS23575at 481.052 kb on - strand, within EX31_RS23575at 481.052 kb on - strand, within EX31_RS23575at 481.189 kb on - strandat 481.189 kb on - strandat 481.267 kb on + strandat 481.268 kb on - strandat 481.277 kb on + strandat 481.278 kb on - strandat 481.278 kb on - strandat 481.398 kb on - strand, within EX31_RS23580at 481.437 kb on - strand, within EX31_RS23580at 481.437 kb on - strand, within EX31_RS23580at 481.437 kb on - strand, within EX31_RS23580at 481.475 kb on - strand, within EX31_RS23580at 481.475 kb on - strand, within EX31_RS23580at 481.475 kb on - strand, within EX31_RS23580at 481.516 kb on - strand, within EX31_RS23580at 481.516 kb on - strand, within EX31_RS23580at 481.517 kb on + strand, within EX31_RS23580at 481.517 kb on + strand, within EX31_RS23580at 481.517 kb on + strand, within EX31_RS23580at 481.517 kb on + strand, within EX31_RS23580at 481.517 kb on + strand, within EX31_RS23580at 481.517 kb on + strand, within EX31_RS23580at 481.517 kb on + strand, within EX31_RS23580at 481.518 kb on - strand, within EX31_RS23580at 481.518 kb on - strand, within EX31_RS23580at 481.521 kb on + strand, within EX31_RS23580at 481.521 kb on + strand, within EX31_RS23580at 481.521 kb on + strand, within EX31_RS23580at 481.522 kb on - strand, within EX31_RS23580at 481.522 kb on - strand, within EX31_RS23580at 481.522 kb on - strand, within EX31_RS23580at 481.522 kb on - strand, within EX31_RS23580at 481.522 kb on - strand, within EX31_RS23580at 481.522 kb on - strand, within EX31_RS23580at 481.522 kb on - strand, within EX31_RS23580at 481.522 kb on - strand, within EX31_RS23580at 481.522 kb on - strand, within EX31_RS23580at 481.525 kb on + strand, within EX31_RS23580at 481.526 kb on - strand, within EX31_RS23580at 481.526 kb on - strand, within EX31_RS23580at 481.526 kb on - strand, within EX31_RS23580at 481.526 kb on - strand, within EX31_RS23580at 481.526 kb on - strand, within EX31_RS23580at 481.593 kb on + strand, within EX31_RS23580at 481.593 kb on + strand, within EX31_RS23580at 481.594 kb on - strand, within EX31_RS23580at 481.594 kb on - strand, within EX31_RS23580at 481.595 kb on + strand, within EX31_RS23580at 481.595 kb on + strand, within EX31_RS23580at 481.595 kb on + strand, within EX31_RS23580at 481.595 kb on + strand, within EX31_RS23580at 481.595 kb on + strand, within EX31_RS23580at 481.595 kb on + strand, within EX31_RS23580at 481.595 kb on + strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.596 kb on - strand, within EX31_RS23580at 481.673 kb on - strand, within EX31_RS23580at 481.698 kb on + strand, within EX31_RS23580at 481.763 kb on + strand, within EX31_RS23580at 481.764 kb on - strand, within EX31_RS23580at 481.777 kb on - strand, within EX31_RS23580at 481.777 kb on - strand, within EX31_RS23580at 481.886 kb on + strand, within EX31_RS23580at 481.886 kb on + strand, within EX31_RS23580at 481.887 kb on - strand, within EX31_RS23580at 481.911 kb on - strand, within EX31_RS23580at 482.004 kb on - strand, within EX31_RS23580at 482.004 kb on - strand, within EX31_RS23580at 482.006 kb on + strand, within EX31_RS23580at 482.006 kb on + strand, within EX31_RS23580at 482.007 kb on - strand, within EX31_RS23580at 482.130 kb on - strand, within EX31_RS23580at 482.130 kb on - strand, within EX31_RS23580at 482.130 kb on - strand, within EX31_RS23580at 482.174 kb on - strand, within EX31_RS23580at 482.190 kb on + strand, within EX31_RS23580at 482.217 kb on + strandat 482.247 kb on + strandat 482.247 kb on + strandat 482.248 kb on - strandat 482.248 kb on - strandat 482.248 kb on - strandat 482.248 kb on - strandat 482.248 kb on - strandat 482.248 kb on - strandat 482.282 kb on - strandat 482.282 kb on - strandat 482.288 kb on + strandat 482.289 kb on - strandat 482.289 kb on - strandat 482.289 kb on - strandat 482.289 kb on - strandat 482.289 kb on - strandat 482.289 kb on - strandat 482.289 kb on - strandat 482.292 kb on + strandat 482.292 kb on + strandat 482.292 kb on + strandat 482.292 kb on + strandat 482.292 kb on + strandat 482.292 kb on + strandat 482.292 kb on + strandat 482.292 kb on + strandat 482.292 kb on + strandat 482.292 kb on + strandat 482.293 kb on + strandat 482.293 kb on - strandat 482.293 kb on - strandat 482.293 kb on - strandat 482.293 kb on - strandat 482.293 kb on - strandat 482.293 kb on - strandat 482.293 kb on - strandat 482.293 kb on - strandat 482.310 kb on + strandat 482.310 kb on + strandat 482.310 kb on + strandat 482.310 kb on + strandat 482.501 kb on + strandat 482.501 kb on + strandat 482.502 kb on - strandat 482.636 kb on - strand, within EX31_RS23585at 482.636 kb on - strand, within EX31_RS23585at 482.638 kb on + strand, within EX31_RS23585at 482.639 kb on - strand, within EX31_RS23585at 482.639 kb on - strand, within EX31_RS23585at 482.639 kb on - strand, within EX31_RS23585at 482.639 kb on - strand, within EX31_RS23585at 482.639 kb on - strand, within EX31_RS23585at 482.639 kb on - strand, within EX31_RS23585at 482.639 kb on - strand, within EX31_RS23585at 482.656 kb on + strand, within EX31_RS23585at 482.656 kb on + strand, within EX31_RS23585at 482.657 kb on - strand, within EX31_RS23585at 482.774 kb on + strand, within EX31_RS23585at 482.799 kb on + strand, within EX31_RS23585at 482.799 kb on + strand, within EX31_RS23585at 482.800 kb on - strand, within EX31_RS23585at 482.800 kb on - strand, within EX31_RS23585at 482.800 kb on - strand, within EX31_RS23585at 482.800 kb on - strand, within EX31_RS23585at 482.800 kb on - strand, within EX31_RS23585at 482.858 kb on + strand, within EX31_RS23585at 482.859 kb on - strand, within EX31_RS23585at 482.957 kb on - strand, within EX31_RS23585at 482.958 kb on + strand, within EX31_RS23585at 482.958 kb on + strand, within EX31_RS23585at 482.958 kb on + strand, within EX31_RS23585at 482.958 kb on + strand, within EX31_RS23585at 482.958 kb on + strand, within EX31_RS23585at 482.958 kb on + strand, within EX31_RS23585at 482.959 kb on - strand, within EX31_RS23585at 482.959 kb on - strand, within EX31_RS23585at 482.959 kb on - strand, within EX31_RS23585at 482.959 kb on - strand, within EX31_RS23585at 482.959 kb on - strand, within EX31_RS23585at 482.959 kb on - strand, within EX31_RS23585at 482.959 kb on - strand, within EX31_RS23585at 482.959 kb on - strand, within EX31_RS23585at 482.959 kb on - strand, within EX31_RS23585at 482.959 kb on - strand, within EX31_RS23585at 482.959 kb on - strand, within EX31_RS23585at 483.020 kb on + strand, within EX31_RS23585at 483.020 kb on + strand, within EX31_RS23585at 483.024 kb on - strand, within EX31_RS23585at 483.063 kb on + strand, within EX31_RS23585at 483.064 kb on - strand, within EX31_RS23585at 483.090 kb on + strand, within EX31_RS23585

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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480,583 + EX31_RS23575 0.36 +0.0
480,655 + EX31_RS23575 0.43 -0.7
480,655 + EX31_RS23575 0.43 +1.1
480,691 + EX31_RS23575 0.46 -2.3
480,692 - EX31_RS23575 0.46 +1.4
480,692 - EX31_RS23575 0.46 +0.6
481,022 - EX31_RS23575 0.78 -0.7
481,022 - EX31_RS23575 0.78 -1.3
481,031 + EX31_RS23575 0.78 +0.9
481,032 - EX31_RS23575 0.79 -0.4
481,052 - EX31_RS23575 0.80 +1.3
481,052 - EX31_RS23575 0.80 +0.5
481,189 - +0.5
481,189 - +0.5
481,267 + +1.5
481,268 - -1.1
481,277 + +1.0
481,278 - -2.6
481,278 - +0.8
481,398 - EX31_RS23580 0.12 -1.4
481,437 - EX31_RS23580 0.16 -0.2
481,437 - EX31_RS23580 0.16 -0.7
481,437 - EX31_RS23580 0.16 -1.4
481,475 - EX31_RS23580 0.20 +1.4
481,475 - EX31_RS23580 0.20 -0.3
481,475 - EX31_RS23580 0.20 -1.8
481,516 - EX31_RS23580 0.24 -0.4
481,516 - EX31_RS23580 0.24 -0.1
481,517 + EX31_RS23580 0.24 +0.9
481,517 + EX31_RS23580 0.24 +0.3
481,517 + EX31_RS23580 0.24 +1.7
481,517 + EX31_RS23580 0.24 +0.7
481,517 + EX31_RS23580 0.24 +0.9
481,517 + EX31_RS23580 0.24 -0.5
481,517 + EX31_RS23580 0.24 +0.2
481,518 - EX31_RS23580 0.24 +1.7
481,518 - EX31_RS23580 0.24 +0.7
481,521 + EX31_RS23580 0.24 -0.7
481,521 + EX31_RS23580 0.24 +1.1
481,521 + EX31_RS23580 0.24 +0.9
481,522 - EX31_RS23580 0.24 -1.9
481,522 - EX31_RS23580 0.24 +2.1
481,522 - EX31_RS23580 0.24 +1.4
481,522 - EX31_RS23580 0.24 -0.1
481,522 - EX31_RS23580 0.24 +1.3
481,522 - EX31_RS23580 0.24 +0.6
481,522 - EX31_RS23580 0.24 -0.1
481,522 - EX31_RS23580 0.24 +0.1
481,522 - EX31_RS23580 0.24 -0.1
481,525 + EX31_RS23580 0.24 +0.6
481,526 - EX31_RS23580 0.25 +0.4
481,526 - EX31_RS23580 0.25 +0.5
481,526 - EX31_RS23580 0.25 -1.7
481,526 - EX31_RS23580 0.25 +1.4
481,526 - EX31_RS23580 0.25 -1.9
481,593 + EX31_RS23580 0.31 +0.1
481,593 + EX31_RS23580 0.31 -1.1
481,594 - EX31_RS23580 0.31 -1.9
481,594 - EX31_RS23580 0.31 +0.5
481,595 + EX31_RS23580 0.31 +3.5
481,595 + EX31_RS23580 0.31 +1.9
481,595 + EX31_RS23580 0.31 -1.4
481,595 + EX31_RS23580 0.31 +1.7
481,595 + EX31_RS23580 0.31 -1.1
481,595 + EX31_RS23580 0.31 +1.3
481,595 + EX31_RS23580 0.31 -1.0
481,596 - EX31_RS23580 0.31 -1.3
481,596 - EX31_RS23580 0.31 +0.2
481,596 - EX31_RS23580 0.31 +1.1
481,596 - EX31_RS23580 0.31 +0.5
481,596 - EX31_RS23580 0.31 -2.1
481,596 - EX31_RS23580 0.31 -0.1
481,596 - EX31_RS23580 0.31 -3.3
481,596 - EX31_RS23580 0.31 -2.3
481,596 - EX31_RS23580 0.31 +0.9
481,596 - EX31_RS23580 0.31 +0.7
481,596 - EX31_RS23580 0.31 +0.9
481,596 - EX31_RS23580 0.31 +0.9
481,673 - EX31_RS23580 0.39 +1.6
481,698 + EX31_RS23580 0.41 -0.7
481,763 + EX31_RS23580 0.48 +0.9
481,764 - EX31_RS23580 0.48 +0.1
481,777 - EX31_RS23580 0.49 +0.4
481,777 - EX31_RS23580 0.49 +0.6
481,886 + EX31_RS23580 0.60 -1.7
481,886 + EX31_RS23580 0.60 -1.9
481,887 - EX31_RS23580 0.60 +1.2
481,911 - EX31_RS23580 0.62 -0.9
482,004 - EX31_RS23580 0.72 -0.1
482,004 - EX31_RS23580 0.72 -1.4
482,006 + EX31_RS23580 0.72 +2.3
482,006 + EX31_RS23580 0.72 +1.1
482,007 - EX31_RS23580 0.72 -1.7
482,130 - EX31_RS23580 0.84 +2.6
482,130 - EX31_RS23580 0.84 +1.1
482,130 - EX31_RS23580 0.84 +1.1
482,174 - EX31_RS23580 0.88 +1.1
482,190 + EX31_RS23580 0.90 +0.5
482,217 + +0.7
482,247 + -0.8
482,247 + -0.0
482,248 - +1.4
482,248 - +0.1
482,248 - +0.6
482,248 - +0.9
482,248 - +1.3
482,248 - -2.1
482,282 - +1.6
482,282 - -1.1
482,288 + -0.1
482,289 - +1.5
482,289 - -2.1
482,289 - +0.1
482,289 - +0.2
482,289 - -1.7
482,289 - +0.6
482,289 - +1.7
482,292 + -1.7
482,292 + -1.2
482,292 + +2.0
482,292 + +0.0
482,292 + +0.9
482,292 + -1.4
482,292 + +0.7
482,292 + -1.9
482,292 + -0.3
482,292 + -1.7
482,293 + -2.6
482,293 - +0.9
482,293 - -0.1
482,293 - +0.3
482,293 - +0.7
482,293 - -1.0
482,293 - +0.1
482,293 - +0.8
482,293 - -1.0
482,310 + -0.7
482,310 + -2.3
482,310 + +0.9
482,310 + -1.4
482,501 + +1.3
482,501 + +0.7
482,502 - +0.7
482,636 - EX31_RS23585 0.15 -0.4
482,636 - EX31_RS23585 0.15 +1.5
482,638 + EX31_RS23585 0.15 +1.6
482,639 - EX31_RS23585 0.15 +0.9
482,639 - EX31_RS23585 0.15 -1.1
482,639 - EX31_RS23585 0.15 -0.7
482,639 - EX31_RS23585 0.15 -2.6
482,639 - EX31_RS23585 0.15 -1.4
482,639 - EX31_RS23585 0.15 +1.9
482,639 - EX31_RS23585 0.15 -0.5
482,656 + EX31_RS23585 0.17 -1.4
482,656 + EX31_RS23585 0.17 -0.0
482,657 - EX31_RS23585 0.17 +0.8
482,774 + EX31_RS23585 0.30 -0.1
482,799 + EX31_RS23585 0.32 -1.9
482,799 + EX31_RS23585 0.32 +0.6
482,800 - EX31_RS23585 0.32 +2.0
482,800 - EX31_RS23585 0.32 -0.4
482,800 - EX31_RS23585 0.32 +0.3
482,800 - EX31_RS23585 0.32 +2.1
482,800 - EX31_RS23585 0.32 +0.9
482,858 + EX31_RS23585 0.39 +0.4
482,859 - EX31_RS23585 0.39 -1.1
482,957 - EX31_RS23585 0.49 +1.0
482,958 + EX31_RS23585 0.49 +2.2
482,958 + EX31_RS23585 0.49 -0.1
482,958 + EX31_RS23585 0.49 +1.6
482,958 + EX31_RS23585 0.49 -0.7
482,958 + EX31_RS23585 0.49 +0.9
482,958 + EX31_RS23585 0.49 -0.1
482,959 - EX31_RS23585 0.49 +1.9
482,959 - EX31_RS23585 0.49 -0.0
482,959 - EX31_RS23585 0.49 +1.3
482,959 - EX31_RS23585 0.49 -0.5
482,959 - EX31_RS23585 0.49 -0.1
482,959 - EX31_RS23585 0.49 +1.2
482,959 - EX31_RS23585 0.49 -1.0
482,959 - EX31_RS23585 0.49 +1.5
482,959 - EX31_RS23585 0.49 +1.9
482,959 - EX31_RS23585 0.49 -0.1
482,959 - EX31_RS23585 0.49 +2.9
483,020 + EX31_RS23585 0.56 +0.9
483,020 + EX31_RS23585 0.56 +0.4
483,024 - EX31_RS23585 0.56 +0.4
483,063 + EX31_RS23585 0.60 +0.5
483,064 - EX31_RS23585 0.60 +0.9
483,090 + EX31_RS23585 0.63 +2.5

Or see this region's nucleotide sequence