Strain Fitness in Rahnella sp. WP5 around EX31_RS23430

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS23420 and EX31_RS23425 overlap by 7 nucleotidesEX31_RS23425 and EX31_RS23430 are separated by 3 nucleotidesEX31_RS23430 and EX31_RS23435 are separated by 19 nucleotides EX31_RS23420: EX31_RS23420 - succinate dehydrogenase cytochrome b556 subunit, at 450,739 to 451,128 _RS23420 EX31_RS23425: EX31_RS23425 - succinate dehydrogenase membrane anchor subunit, at 451,122 to 451,469 _RS23425 EX31_RS23430: EX31_RS23430 - succinate dehydrogenase flavoprotein subunit, at 451,473 to 453,239 _RS23430 EX31_RS23435: EX31_RS23435 - succinate dehydrogenase iron-sulfur subunit, at 453,259 to 453,975 _RS23435 Position (kb) 451 452 453 454Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 450.484 kb on + strandat 450.485 kb on - strandat 450.535 kb on + strandat 450.562 kb on + strandat 450.609 kb on + strandat 450.609 kb on + strandat 450.609 kb on + strandat 450.702 kb on + strandat 450.702 kb on + strandat 450.702 kb on + strandat 450.702 kb on + strandat 450.702 kb on + strandat 450.702 kb on + strandat 450.703 kb on - strandat 450.824 kb on + strand, within EX31_RS23420at 450.825 kb on - strand, within EX31_RS23420at 450.846 kb on + strand, within EX31_RS23420at 450.846 kb on + strand, within EX31_RS23420at 450.846 kb on + strand, within EX31_RS23420at 450.846 kb on + strand, within EX31_RS23420at 450.846 kb on + strand, within EX31_RS23420at 450.846 kb on + strand, within EX31_RS23420at 450.936 kb on + strand, within EX31_RS23420at 450.936 kb on + strand, within EX31_RS23420at 450.936 kb on + strand, within EX31_RS23420at 450.985 kb on + strand, within EX31_RS23420at 451.004 kb on + strand, within EX31_RS23420at 451.126 kb on + strandat 451.151 kb on + strandat 451.206 kb on + strand, within EX31_RS23425at 451.206 kb on + strand, within EX31_RS23425at 451.206 kb on + strand, within EX31_RS23425at 451.206 kb on + strand, within EX31_RS23425at 451.206 kb on + strand, within EX31_RS23425at 451.206 kb on + strand, within EX31_RS23425at 451.206 kb on + strand, within EX31_RS23425at 451.206 kb on + strand, within EX31_RS23425at 451.206 kb on + strand, within EX31_RS23425at 451.208 kb on + strand, within EX31_RS23425at 451.208 kb on + strand, within EX31_RS23425at 451.209 kb on - strand, within EX31_RS23425at 451.217 kb on + strand, within EX31_RS23425at 451.217 kb on + strand, within EX31_RS23425at 451.217 kb on + strand, within EX31_RS23425at 451.297 kb on + strand, within EX31_RS23425at 451.297 kb on + strand, within EX31_RS23425at 451.368 kb on + strand, within EX31_RS23425at 451.431 kb on + strand, within EX31_RS23425at 451.431 kb on + strand, within EX31_RS23425at 451.435 kb on + strandat 451.435 kb on + strandat 451.440 kb on + strandat 451.467 kb on + strandat 451.467 kb on + strandat 451.467 kb on + strandat 451.467 kb on + strandat 451.607 kb on + strandat 451.680 kb on + strand, within EX31_RS23430at 451.680 kb on + strand, within EX31_RS23430at 451.680 kb on + strand, within EX31_RS23430at 451.680 kb on + strand, within EX31_RS23430at 451.680 kb on + strand, within EX31_RS23430at 451.704 kb on + strand, within EX31_RS23430at 451.704 kb on + strand, within EX31_RS23430at 451.704 kb on + strand, within EX31_RS23430at 451.704 kb on + strand, within EX31_RS23430at 451.704 kb on + strand, within EX31_RS23430at 451.705 kb on - strand, within EX31_RS23430at 451.706 kb on + strand, within EX31_RS23430at 451.731 kb on + strand, within EX31_RS23430at 451.731 kb on + strand, within EX31_RS23430at 451.731 kb on + strand, within EX31_RS23430at 451.731 kb on + strand, within EX31_RS23430at 451.731 kb on + strand, within EX31_RS23430at 451.731 kb on + strand, within EX31_RS23430at 451.731 kb on + strand, within EX31_RS23430at 451.732 kb on - strand, within EX31_RS23430at 451.732 kb on - strand, within EX31_RS23430at 451.732 kb on - strand, within EX31_RS23430at 451.733 kb on + strand, within EX31_RS23430at 451.733 kb on + strand, within EX31_RS23430at 451.733 kb on + strand, within EX31_RS23430at 451.733 kb on + strand, within EX31_RS23430at 451.733 kb on + strand, within EX31_RS23430at 451.733 kb on + strand, within EX31_RS23430at 451.733 kb on + strand, within EX31_RS23430at 451.733 kb on + strand, within EX31_RS23430at 451.815 kb on + strand, within EX31_RS23430at 451.815 kb on + strand, within EX31_RS23430at 451.816 kb on - strand, within EX31_RS23430at 451.871 kb on + strand, within EX31_RS23430at 451.920 kb on + strand, within EX31_RS23430at 452.046 kb on + strand, within EX31_RS23430at 452.123 kb on + strand, within EX31_RS23430at 452.123 kb on + strand, within EX31_RS23430at 452.351 kb on + strand, within EX31_RS23430at 452.429 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.535 kb on + strand, within EX31_RS23430at 452.536 kb on - strand, within EX31_RS23430at 452.738 kb on + strand, within EX31_RS23430at 452.788 kb on + strand, within EX31_RS23430at 452.788 kb on + strand, within EX31_RS23430at 452.975 kb on + strand, within EX31_RS23430at 452.975 kb on + strand, within EX31_RS23430at 452.976 kb on - strand, within EX31_RS23430at 453.066 kb on + strandat 453.147 kb on + strandat 453.147 kb on + strandat 453.147 kb on + strandat 453.148 kb on - strandat 453.197 kb on + strandat 453.230 kb on + strandat 453.234 kb on + strandat 453.234 kb on + strandat 453.235 kb on - strandat 453.237 kb on + strandat 453.237 kb on + strandat 453.237 kb on + strandat 453.286 kb on + strandat 453.313 kb on + strandat 453.313 kb on + strandat 453.313 kb on + strandat 453.313 kb on + strandat 453.325 kb on + strandat 453.340 kb on - strand, within EX31_RS23435at 453.483 kb on + strand, within EX31_RS23435at 453.483 kb on + strand, within EX31_RS23435at 453.483 kb on + strand, within EX31_RS23435at 453.570 kb on - strand, within EX31_RS23435at 453.572 kb on + strand, within EX31_RS23435at 453.572 kb on + strand, within EX31_RS23435at 453.572 kb on + strand, within EX31_RS23435at 453.589 kb on + strand, within EX31_RS23435at 453.609 kb on + strand, within EX31_RS23435at 453.616 kb on + strand, within EX31_RS23435at 453.616 kb on + strand, within EX31_RS23435at 453.616 kb on + strand, within EX31_RS23435at 453.616 kb on + strand, within EX31_RS23435at 453.697 kb on + strand, within EX31_RS23435at 453.697 kb on + strand, within EX31_RS23435at 453.705 kb on + strand, within EX31_RS23435at 453.705 kb on + strand, within EX31_RS23435at 453.705 kb on + strand, within EX31_RS23435at 453.706 kb on - strand, within EX31_RS23435at 453.902 kb on + strand, within EX31_RS23435at 453.903 kb on - strand, within EX31_RS23435at 453.945 kb on + strandat 453.945 kb on + strandat 453.946 kb on - strandat 453.946 kb on - strandat 453.959 kb on + strandat 453.959 kb on + strandat 453.980 kb on + strandat 453.980 kb on + strandat 454.020 kb on + strandat 454.020 kb on + strandat 454.021 kb on - strandat 454.021 kb on - strandat 454.048 kb on - strandat 454.062 kb on + strandat 454.062 kb on + strandat 454.143 kb on + strandat 454.207 kb on + strandat 454.207 kb on + strandat 454.207 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
450,484 + -1.1
450,485 - -0.7
450,535 + -1.0
450,562 + -0.3
450,609 + -1.9
450,609 + +0.6
450,609 + -0.3
450,702 + +1.1
450,702 + -1.2
450,702 + +1.5
450,702 + -2.1
450,702 + +1.2
450,702 + -1.8
450,703 - -0.7
450,824 + EX31_RS23420 0.22 +0.9
450,825 - EX31_RS23420 0.22 +0.9
450,846 + EX31_RS23420 0.27 -1.4
450,846 + EX31_RS23420 0.27 -1.1
450,846 + EX31_RS23420 0.27 -1.3
450,846 + EX31_RS23420 0.27 -2.1
450,846 + EX31_RS23420 0.27 -1.4
450,846 + EX31_RS23420 0.27 +0.9
450,936 + EX31_RS23420 0.51 -2.4
450,936 + EX31_RS23420 0.51 -1.9
450,936 + EX31_RS23420 0.51 -0.1
450,985 + EX31_RS23420 0.63 -0.1
451,004 + EX31_RS23420 0.68 -1.7
451,126 + -0.1
451,151 + -0.7
451,206 + EX31_RS23425 0.24 -0.7
451,206 + EX31_RS23425 0.24 -1.1
451,206 + EX31_RS23425 0.24 -2.3
451,206 + EX31_RS23425 0.24 -2.1
451,206 + EX31_RS23425 0.24 -2.4
451,206 + EX31_RS23425 0.24 -1.6
451,206 + EX31_RS23425 0.24 -1.4
451,206 + EX31_RS23425 0.24 -0.5
451,206 + EX31_RS23425 0.24 -2.1
451,208 + EX31_RS23425 0.25 -3.2
451,208 + EX31_RS23425 0.25 -0.7
451,209 - EX31_RS23425 0.25 -2.1
451,217 + EX31_RS23425 0.27 -1.7
451,217 + EX31_RS23425 0.27 -2.4
451,217 + EX31_RS23425 0.27 -0.1
451,297 + EX31_RS23425 0.50 -2.3
451,297 + EX31_RS23425 0.50 -2.1
451,368 + EX31_RS23425 0.71 -2.9
451,431 + EX31_RS23425 0.89 -3.8
451,431 + EX31_RS23425 0.89 -2.3
451,435 + -2.7
451,435 + -1.9
451,440 + -1.2
451,467 + -0.8
451,467 + -2.1
451,467 + -1.1
451,467 + -1.9
451,607 + -1.7
451,680 + EX31_RS23430 0.12 -1.1
451,680 + EX31_RS23430 0.12 -1.7
451,680 + EX31_RS23430 0.12 -1.1
451,680 + EX31_RS23430 0.12 -1.9
451,680 + EX31_RS23430 0.12 -2.1
451,704 + EX31_RS23430 0.13 -1.1
451,704 + EX31_RS23430 0.13 -3.3
451,704 + EX31_RS23430 0.13 -1.1
451,704 + EX31_RS23430 0.13 -1.8
451,704 + EX31_RS23430 0.13 +0.1
451,705 - EX31_RS23430 0.13 -0.1
451,706 + EX31_RS23430 0.13 -3.5
451,731 + EX31_RS23430 0.15 -2.3
451,731 + EX31_RS23430 0.15 -0.1
451,731 + EX31_RS23430 0.15 -0.1
451,731 + EX31_RS23430 0.15 -0.7
451,731 + EX31_RS23430 0.15 -2.1
451,731 + EX31_RS23430 0.15 -1.1
451,731 + EX31_RS23430 0.15 -1.1
451,732 - EX31_RS23430 0.15 -2.1
451,732 - EX31_RS23430 0.15 -0.1
451,732 - EX31_RS23430 0.15 -2.3
451,733 + EX31_RS23430 0.15 -1.1
451,733 + EX31_RS23430 0.15 -0.7
451,733 + EX31_RS23430 0.15 -2.1
451,733 + EX31_RS23430 0.15 -2.6
451,733 + EX31_RS23430 0.15 -1.7
451,733 + EX31_RS23430 0.15 -2.0
451,733 + EX31_RS23430 0.15 -1.7
451,733 + EX31_RS23430 0.15 -2.0
451,815 + EX31_RS23430 0.19 -1.4
451,815 + EX31_RS23430 0.19 -3.0
451,816 - EX31_RS23430 0.19 -2.4
451,871 + EX31_RS23430 0.23 -2.4
451,920 + EX31_RS23430 0.25 -0.9
452,046 + EX31_RS23430 0.32 -0.7
452,123 + EX31_RS23430 0.37 -2.8
452,123 + EX31_RS23430 0.37 -1.9
452,351 + EX31_RS23430 0.50 -2.8
452,429 + EX31_RS23430 0.54 -2.4
452,535 + EX31_RS23430 0.60 -2.6
452,535 + EX31_RS23430 0.60 -1.1
452,535 + EX31_RS23430 0.60 -0.3
452,535 + EX31_RS23430 0.60 -1.1
452,535 + EX31_RS23430 0.60 -1.4
452,535 + EX31_RS23430 0.60 -1.4
452,535 + EX31_RS23430 0.60 -2.3
452,535 + EX31_RS23430 0.60 -3.0
452,535 + EX31_RS23430 0.60 -2.1
452,536 - EX31_RS23430 0.60 -0.7
452,738 + EX31_RS23430 0.72 -3.3
452,788 + EX31_RS23430 0.74 +0.9
452,788 + EX31_RS23430 0.74 -1.3
452,975 + EX31_RS23430 0.85 -0.1
452,975 + EX31_RS23430 0.85 -0.7
452,976 - EX31_RS23430 0.85 -1.9
453,066 + -1.7
453,147 + -0.5
453,147 + -1.7
453,147 + -0.1
453,148 - -0.1
453,197 + +0.9
453,230 + -3.0
453,234 + -0.3
453,234 + -0.1
453,235 - +0.9
453,237 + -2.1
453,237 + +1.2
453,237 + -0.4
453,286 + -1.7
453,313 + -1.9
453,313 + -2.4
453,313 + -0.9
453,313 + -0.7
453,325 + -1.9
453,340 - EX31_RS23435 0.11 +0.9
453,483 + EX31_RS23435 0.31 -1.4
453,483 + EX31_RS23435 0.31 -0.1
453,483 + EX31_RS23435 0.31 -1.1
453,570 - EX31_RS23435 0.43 -1.4
453,572 + EX31_RS23435 0.44 +0.5
453,572 + EX31_RS23435 0.44 -1.7
453,572 + EX31_RS23435 0.44 -3.6
453,589 + EX31_RS23435 0.46 -2.4
453,609 + EX31_RS23435 0.49 -1.1
453,616 + EX31_RS23435 0.50 +0.9
453,616 + EX31_RS23435 0.50 -2.4
453,616 + EX31_RS23435 0.50 -1.4
453,616 + EX31_RS23435 0.50 -2.1
453,697 + EX31_RS23435 0.61 -2.6
453,697 + EX31_RS23435 0.61 -0.7
453,705 + EX31_RS23435 0.62 -2.7
453,705 + EX31_RS23435 0.62 -1.4
453,705 + EX31_RS23435 0.62 -3.4
453,706 - EX31_RS23435 0.62 -2.4
453,902 + EX31_RS23435 0.90 -0.7
453,903 - EX31_RS23435 0.90 -0.7
453,945 + -2.9
453,945 + -2.4
453,946 - +0.9
453,946 - +0.9
453,959 + +0.1
453,959 + +0.7
453,980 + +0.1
453,980 + -0.1
454,020 + -1.1
454,020 + +1.2
454,021 - -0.3
454,021 - -0.7
454,048 - +2.2
454,062 + +0.1
454,062 + -1.2
454,143 + +0.0
454,207 + +2.9
454,207 + -1.9
454,207 + -0.6

Or see this region's nucleotide sequence