Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22310 and EX31_RS22315 are separated by 341 nucleotides EX31_RS22315 and EX31_RS22320 are separated by 85 nucleotides
EX31_RS22310: EX31_RS22310 - SmdB family multidrug efflux ABC transporter permease/ATP-binding protein, at 214,526 to 216,355
_RS22310
EX31_RS22315: EX31_RS22315 - P-II family nitrogen regulator, at 216,697 to 217,035
_RS22315
EX31_RS22320: EX31_RS22320 - ammonium transporter AmtB, at 217,121 to 218,410
_RS22320
Position (kb) 216
217
218 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 215.713 kb on + strand, within EX31_RS22310 at 215.714 kb on - strand, within EX31_RS22310 at 215.739 kb on - strand, within EX31_RS22310 at 215.779 kb on + strand, within EX31_RS22310 at 215.779 kb on + strand, within EX31_RS22310 at 215.779 kb on + strand, within EX31_RS22310 at 215.780 kb on - strand, within EX31_RS22310 at 215.818 kb on + strand, within EX31_RS22310 at 215.818 kb on + strand, within EX31_RS22310 at 215.818 kb on + strand, within EX31_RS22310 at 215.819 kb on - strand, within EX31_RS22310 at 215.869 kb on + strand, within EX31_RS22310 at 215.870 kb on - strand, within EX31_RS22310 at 215.890 kb on + strand, within EX31_RS22310 at 215.971 kb on + strand, within EX31_RS22310 at 215.971 kb on + strand, within EX31_RS22310 at 215.971 kb on + strand, within EX31_RS22310 at 215.972 kb on - strand, within EX31_RS22310 at 216.148 kb on + strand, within EX31_RS22310 at 216.148 kb on + strand, within EX31_RS22310 at 216.148 kb on + strand, within EX31_RS22310 at 216.200 kb on - strand at 216.275 kb on + strand at 216.284 kb on + strand at 216.284 kb on + strand at 216.284 kb on + strand at 216.284 kb on + strand at 216.284 kb on + strand at 216.284 kb on + strand at 216.285 kb on - strand at 216.331 kb on + strand at 216.332 kb on - strand at 216.354 kb on - strand at 216.440 kb on + strand at 216.440 kb on + strand at 216.441 kb on - strand at 216.441 kb on - strand at 216.441 kb on - strand at 216.441 kb on - strand at 216.441 kb on - strand at 216.441 kb on - strand at 216.500 kb on + strand at 216.500 kb on + strand at 216.500 kb on + strand at 216.500 kb on + strand at 216.501 kb on - strand at 216.501 kb on - strand at 216.501 kb on - strand at 216.501 kb on - strand at 216.528 kb on + strand at 216.529 kb on - strand at 216.577 kb on - strand at 216.577 kb on - strand at 216.729 kb on + strand at 216.795 kb on + strand, within EX31_RS22315 at 216.833 kb on - strand, within EX31_RS22315 at 216.847 kb on + strand, within EX31_RS22315 at 216.848 kb on - strand, within EX31_RS22315 at 216.848 kb on - strand, within EX31_RS22315 at 216.848 kb on - strand, within EX31_RS22315 at 216.889 kb on - strand, within EX31_RS22315 at 216.940 kb on + strand, within EX31_RS22315 at 216.941 kb on - strand, within EX31_RS22315 at 216.949 kb on - strand, within EX31_RS22315 at 217.047 kb on + strand at 217.048 kb on - strand at 217.048 kb on - strand at 217.056 kb on + strand at 217.056 kb on + strand at 217.056 kb on + strand at 217.057 kb on - strand at 217.057 kb on - strand at 217.057 kb on - strand at 217.057 kb on - strand at 217.134 kb on + strand at 217.226 kb on - strand at 217.226 kb on - strand at 217.283 kb on + strand, within EX31_RS22320 at 217.294 kb on - strand, within EX31_RS22320 at 217.294 kb on - strand, within EX31_RS22320 at 217.294 kb on - strand, within EX31_RS22320 at 217.373 kb on + strand, within EX31_RS22320 at 217.379 kb on + strand, within EX31_RS22320 at 217.380 kb on - strand, within EX31_RS22320 at 217.516 kb on + strand, within EX31_RS22320 at 217.517 kb on - strand, within EX31_RS22320 at 217.557 kb on + strand, within EX31_RS22320 at 217.557 kb on + strand, within EX31_RS22320 at 217.557 kb on + strand, within EX31_RS22320 at 217.557 kb on + strand, within EX31_RS22320 at 217.557 kb on + strand, within EX31_RS22320 at 217.558 kb on - strand, within EX31_RS22320 at 217.558 kb on - strand, within EX31_RS22320 at 217.558 kb on - strand, within EX31_RS22320 at 217.558 kb on - strand, within EX31_RS22320 at 217.558 kb on - strand, within EX31_RS22320 at 217.607 kb on + strand, within EX31_RS22320 at 217.607 kb on + strand, within EX31_RS22320 at 217.727 kb on + strand, within EX31_RS22320 at 217.727 kb on + strand, within EX31_RS22320 at 217.727 kb on + strand, within EX31_RS22320 at 217.728 kb on - strand, within EX31_RS22320 at 217.728 kb on - strand, within EX31_RS22320 at 217.728 kb on - strand, within EX31_RS22320 at 217.728 kb on - strand, within EX31_RS22320 at 217.814 kb on + strand, within EX31_RS22320 at 217.814 kb on + strand, within EX31_RS22320 at 217.814 kb on + strand, within EX31_RS22320 at 217.814 kb on + strand, within EX31_RS22320 at 217.814 kb on + strand, within EX31_RS22320 at 217.815 kb on - strand, within EX31_RS22320 at 217.815 kb on - strand, within EX31_RS22320 at 218.021 kb on - strand, within EX31_RS22320 at 218.021 kb on - strand, within EX31_RS22320
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 215,713 + EX31_RS22310 0.65 -0.0 215,714 - EX31_RS22310 0.65 +0.1 215,739 - EX31_RS22310 0.66 +1.0 215,779 + EX31_RS22310 0.68 +0.7 215,779 + EX31_RS22310 0.68 +1.0 215,779 + EX31_RS22310 0.68 +0.8 215,780 - EX31_RS22310 0.69 -0.9 215,818 + EX31_RS22310 0.71 +0.8 215,818 + EX31_RS22310 0.71 +1.5 215,818 + EX31_RS22310 0.71 -1.3 215,819 - EX31_RS22310 0.71 -1.0 215,869 + EX31_RS22310 0.73 -0.3 215,870 - EX31_RS22310 0.73 -0.0 215,890 + EX31_RS22310 0.75 +0.9 215,971 + EX31_RS22310 0.79 +1.0 215,971 + EX31_RS22310 0.79 -1.0 215,971 + EX31_RS22310 0.79 +0.2 215,972 - EX31_RS22310 0.79 -0.5 216,148 + EX31_RS22310 0.89 +1.6 216,148 + EX31_RS22310 0.89 +1.2 216,148 + EX31_RS22310 0.89 +0.3 216,200 - -1.0 216,275 + +2.7 216,284 + -2.3 216,284 + +0.1 216,284 + +1.8 216,284 + -0.7 216,284 + -0.8 216,284 + +1.2 216,285 - +1.1 216,331 + +1.6 216,332 - -0.3 216,354 - +1.2 216,440 + +1.2 216,440 + -1.1 216,441 - -2.2 216,441 - -1.3 216,441 - +0.1 216,441 - -0.6 216,441 - -0.0 216,441 - -2.0 216,500 + -1.0 216,500 + -1.0 216,500 + -0.0 216,500 + -2.0 216,501 - -1.2 216,501 - +2.2 216,501 - +1.4 216,501 - -0.0 216,528 + -0.0 216,529 - +0.7 216,577 - -2.7 216,577 - +0.8 216,729 + -0.6 216,795 + EX31_RS22315 0.29 -2.0 216,833 - EX31_RS22315 0.40 -1.3 216,847 + EX31_RS22315 0.44 -1.0 216,848 - EX31_RS22315 0.45 -1.8 216,848 - EX31_RS22315 0.45 +4.0 216,848 - EX31_RS22315 0.45 +0.4 216,889 - EX31_RS22315 0.57 -0.0 216,940 + EX31_RS22315 0.72 -2.5 216,941 - EX31_RS22315 0.72 -1.2 216,949 - EX31_RS22315 0.74 -1.3 217,047 + -1.6 217,048 - +1.2 217,048 - -0.7 217,056 + +0.2 217,056 + -0.8 217,056 + -1.8 217,057 - +1.9 217,057 - +0.6 217,057 - +0.5 217,057 - -1.3 217,134 + -1.6 217,226 - +0.7 217,226 - -1.2 217,283 + EX31_RS22320 0.13 -0.7 217,294 - EX31_RS22320 0.13 +1.0 217,294 - EX31_RS22320 0.13 -0.3 217,294 - EX31_RS22320 0.13 +0.6 217,373 + EX31_RS22320 0.20 -0.0 217,379 + EX31_RS22320 0.20 -0.8 217,380 - EX31_RS22320 0.20 +1.4 217,516 + EX31_RS22320 0.31 +1.0 217,517 - EX31_RS22320 0.31 -1.2 217,557 + EX31_RS22320 0.34 -1.0 217,557 + EX31_RS22320 0.34 -0.1 217,557 + EX31_RS22320 0.34 -0.0 217,557 + EX31_RS22320 0.34 +2.4 217,557 + EX31_RS22320 0.34 -0.6 217,558 - EX31_RS22320 0.34 -0.0 217,558 - EX31_RS22320 0.34 +1.0 217,558 - EX31_RS22320 0.34 -1.0 217,558 - EX31_RS22320 0.34 -0.6 217,558 - EX31_RS22320 0.34 +0.1 217,607 + EX31_RS22320 0.38 -2.3 217,607 + EX31_RS22320 0.38 -1.0 217,727 + EX31_RS22320 0.47 +1.3 217,727 + EX31_RS22320 0.47 -1.3 217,727 + EX31_RS22320 0.47 +1.6 217,728 - EX31_RS22320 0.47 -1.3 217,728 - EX31_RS22320 0.47 -1.3 217,728 - EX31_RS22320 0.47 +1.3 217,728 - EX31_RS22320 0.47 +1.6 217,814 + EX31_RS22320 0.54 -0.8 217,814 + EX31_RS22320 0.54 +1.0 217,814 + EX31_RS22320 0.54 +3.0 217,814 + EX31_RS22320 0.54 +1.0 217,814 + EX31_RS22320 0.54 +0.7 217,815 - EX31_RS22320 0.54 -0.2 217,815 - EX31_RS22320 0.54 +1.1 218,021 - EX31_RS22320 0.70 -1.5 218,021 - EX31_RS22320 0.70 +0.1
Or see this region's nucleotide sequence