Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS21465 and EX31_RS21470 are separated by 350 nucleotides EX31_RS21470 and EX31_RS21475 are separated by 311 nucleotides EX31_RS21475 and EX31_RS21480 are separated by 270 nucleotides
EX31_RS21465: EX31_RS21465 - ribose-5-phosphate isomerase RpiA, at 35,936 to 36,598
_RS21465
EX31_RS21470: EX31_RS21470 - phosphoglycerate dehydrogenase, at 36,949 to 38,187
_RS21470
EX31_RS21475: EX31_RS21475 - acid resistance repetitive basic protein Asr, at 38,499 to 38,849
_RS21475
EX31_RS21480: EX31_RS21480 - 5-formyltetrahydrofolate cyclo-ligase, at 39,120 to 39,716
_RS21480
Position (kb) 36
37
38
39 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 36.170 kb on + strand, within EX31_RS21465 at 36.359 kb on + strand, within EX31_RS21465 at 36.597 kb on - strand at 36.597 kb on - strand at 36.605 kb on + strand at 36.605 kb on + strand at 36.606 kb on - strand at 36.606 kb on - strand at 36.606 kb on - strand at 36.606 kb on - strand at 36.607 kb on + strand at 36.607 kb on + strand at 36.607 kb on + strand at 36.608 kb on - strand at 36.608 kb on - strand at 36.683 kb on - strand at 36.683 kb on - strand at 36.683 kb on - strand at 36.694 kb on - strand at 36.694 kb on - strand at 36.731 kb on - strand at 36.743 kb on + strand at 36.743 kb on + strand at 36.743 kb on + strand at 36.743 kb on + strand at 36.743 kb on + strand at 36.743 kb on + strand at 36.743 kb on + strand at 36.743 kb on + strand at 36.743 kb on + strand at 36.744 kb on - strand at 36.744 kb on - strand at 36.744 kb on - strand at 36.886 kb on + strand at 36.887 kb on - strand at 36.887 kb on - strand at 36.935 kb on + strand at 36.936 kb on - strand at 36.936 kb on - strand at 36.937 kb on + strand at 36.938 kb on - strand at 37.023 kb on + strand at 37.023 kb on + strand at 37.023 kb on + strand at 37.023 kb on + strand at 37.024 kb on - strand at 37.024 kb on - strand at 37.042 kb on + strand at 37.042 kb on + strand at 37.073 kb on + strand, within EX31_RS21470 at 37.073 kb on + strand, within EX31_RS21470 at 37.134 kb on + strand, within EX31_RS21470 at 37.242 kb on + strand, within EX31_RS21470 at 37.437 kb on + strand, within EX31_RS21470 at 37.483 kb on + strand, within EX31_RS21470 at 37.483 kb on + strand, within EX31_RS21470 at 37.483 kb on + strand, within EX31_RS21470 at 37.483 kb on + strand, within EX31_RS21470 at 37.483 kb on + strand, within EX31_RS21470 at 37.483 kb on + strand, within EX31_RS21470 at 37.484 kb on - strand, within EX31_RS21470 at 37.484 kb on - strand, within EX31_RS21470 at 37.484 kb on - strand, within EX31_RS21470 at 37.484 kb on - strand, within EX31_RS21470 at 37.484 kb on - strand, within EX31_RS21470 at 37.484 kb on - strand, within EX31_RS21470 at 37.484 kb on - strand, within EX31_RS21470 at 37.484 kb on - strand, within EX31_RS21470 at 37.486 kb on + strand, within EX31_RS21470 at 37.486 kb on + strand, within EX31_RS21470 at 37.486 kb on + strand, within EX31_RS21470 at 37.486 kb on + strand, within EX31_RS21470 at 37.486 kb on + strand, within EX31_RS21470 at 37.487 kb on - strand, within EX31_RS21470 at 37.487 kb on - strand, within EX31_RS21470 at 37.555 kb on - strand, within EX31_RS21470 at 37.765 kb on - strand, within EX31_RS21470 at 37.808 kb on + strand, within EX31_RS21470 at 37.808 kb on + strand, within EX31_RS21470 at 37.808 kb on + strand, within EX31_RS21470 at 37.808 kb on + strand, within EX31_RS21470 at 37.808 kb on + strand, within EX31_RS21470 at 37.808 kb on + strand, within EX31_RS21470 at 37.808 kb on + strand, within EX31_RS21470 at 37.808 kb on + strand, within EX31_RS21470 at 37.808 kb on + strand, within EX31_RS21470 at 37.808 kb on + strand, within EX31_RS21470 at 37.809 kb on - strand, within EX31_RS21470 at 37.809 kb on - strand, within EX31_RS21470 at 37.809 kb on - strand, within EX31_RS21470 at 37.809 kb on - strand, within EX31_RS21470 at 37.824 kb on + strand, within EX31_RS21470 at 37.891 kb on + strand, within EX31_RS21470 at 37.908 kb on + strand, within EX31_RS21470 at 37.908 kb on + strand, within EX31_RS21470 at 37.908 kb on + strand, within EX31_RS21470 at 37.908 kb on + strand, within EX31_RS21470 at 37.908 kb on + strand, within EX31_RS21470 at 37.909 kb on - strand, within EX31_RS21470 at 37.909 kb on - strand, within EX31_RS21470 at 37.909 kb on - strand, within EX31_RS21470 at 37.980 kb on + strand, within EX31_RS21470 at 38.059 kb on + strand, within EX31_RS21470 at 38.060 kb on - strand, within EX31_RS21470 at 38.086 kb on + strand at 38.086 kb on + strand at 38.086 kb on + strand at 38.086 kb on + strand at 38.087 kb on - strand at 38.119 kb on - strand at 38.188 kb on + strand at 38.188 kb on + strand at 38.188 kb on + strand at 38.188 kb on + strand at 38.212 kb on + strand at 38.212 kb on + strand at 38.212 kb on + strand at 38.212 kb on + strand at 38.212 kb on + strand at 38.212 kb on + strand at 38.242 kb on + strand at 38.242 kb on + strand at 38.258 kb on + strand at 38.280 kb on + strand at 38.280 kb on + strand at 38.280 kb on + strand at 38.280 kb on + strand at 38.281 kb on - strand at 38.307 kb on - strand at 38.391 kb on - strand at 38.456 kb on + strand at 38.456 kb on + strand at 38.457 kb on - strand at 38.457 kb on - strand at 38.490 kb on - strand at 38.500 kb on + strand at 38.500 kb on + strand at 38.500 kb on + strand at 38.500 kb on + strand at 38.500 kb on + strand at 38.500 kb on + strand at 38.501 kb on - strand at 38.501 kb on - strand at 38.501 kb on - strand at 38.501 kb on - strand at 38.537 kb on + strand, within EX31_RS21475 at 38.537 kb on + strand, within EX31_RS21475 at 38.538 kb on - strand, within EX31_RS21475 at 38.714 kb on + strand, within EX31_RS21475 at 38.714 kb on + strand, within EX31_RS21475 at 38.714 kb on + strand, within EX31_RS21475 at 38.714 kb on + strand, within EX31_RS21475 at 38.715 kb on - strand, within EX31_RS21475 at 38.715 kb on - strand, within EX31_RS21475 at 38.754 kb on - strand, within EX31_RS21475 at 38.835 kb on + strand at 38.835 kb on + strand at 38.835 kb on + strand at 38.835 kb on + strand at 38.835 kb on + strand at 38.838 kb on + strand at 38.910 kb on + strand at 38.911 kb on - strand at 38.913 kb on + strand at 38.914 kb on - strand at 38.914 kb on - strand at 38.914 kb on - strand at 38.969 kb on + strand at 38.988 kb on + strand at 39.106 kb on + strand at 39.107 kb on - strand at 39.107 kb on - strand at 39.107 kb on - strand at 39.107 kb on - strand at 39.109 kb on - strand at 39.160 kb on - strand at 39.160 kb on - strand at 39.187 kb on - strand, within EX31_RS21480
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 36,170 + EX31_RS21465 0.35 -0.0 36,359 + EX31_RS21465 0.64 -0.6 36,597 - +0.6 36,597 - -1.6 36,605 + -0.6 36,605 + -1.1 36,606 - +1.8 36,606 - +1.3 36,606 - +1.2 36,606 - +0.2 36,607 + +0.7 36,607 + -2.2 36,607 + -0.0 36,608 - -1.3 36,608 - -1.8 36,683 - -0.6 36,683 - -2.5 36,683 - +0.4 36,694 - -0.5 36,694 - +1.0 36,731 - +0.5 36,743 + -0.4 36,743 + -1.0 36,743 + -0.0 36,743 + -0.7 36,743 + -0.0 36,743 + -1.6 36,743 + +0.1 36,743 + -0.3 36,743 + -1.6 36,744 - +2.3 36,744 - +0.2 36,744 - +0.8 36,886 + +1.0 36,887 - -0.6 36,887 - -2.2 36,935 + -0.6 36,936 - -0.0 36,936 - -2.0 36,937 + +0.7 36,938 - -1.8 37,023 + -2.8 37,023 + -3.8 37,023 + -1.6 37,023 + -2.2 37,024 - -1.8 37,024 - -0.0 37,042 + -1.6 37,042 + -1.8 37,073 + EX31_RS21470 0.10 -1.4 37,073 + EX31_RS21470 0.10 -2.0 37,134 + EX31_RS21470 0.15 -3.6 37,242 + EX31_RS21470 0.24 -3.3 37,437 + EX31_RS21470 0.39 -1.7 37,483 + EX31_RS21470 0.43 -2.8 37,483 + EX31_RS21470 0.43 -1.6 37,483 + EX31_RS21470 0.43 -2.9 37,483 + EX31_RS21470 0.43 -2.7 37,483 + EX31_RS21470 0.43 -1.6 37,483 + EX31_RS21470 0.43 -2.7 37,484 - EX31_RS21470 0.43 -1.0 37,484 - EX31_RS21470 0.43 -1.6 37,484 - EX31_RS21470 0.43 -2.7 37,484 - EX31_RS21470 0.43 -1.8 37,484 - EX31_RS21470 0.43 -2.1 37,484 - EX31_RS21470 0.43 +1.0 37,484 - EX31_RS21470 0.43 -1.0 37,484 - EX31_RS21470 0.43 -1.6 37,486 + EX31_RS21470 0.43 -2.5 37,486 + EX31_RS21470 0.43 -2.6 37,486 + EX31_RS21470 0.43 -4.1 37,486 + EX31_RS21470 0.43 -3.8 37,486 + EX31_RS21470 0.43 -3.0 37,487 - EX31_RS21470 0.43 -1.8 37,487 - EX31_RS21470 0.43 -2.5 37,555 - EX31_RS21470 0.49 -1.0 37,765 - EX31_RS21470 0.66 -1.3 37,808 + EX31_RS21470 0.69 -0.6 37,808 + EX31_RS21470 0.69 -4.7 37,808 + EX31_RS21470 0.69 -3.0 37,808 + EX31_RS21470 0.69 -1.8 37,808 + EX31_RS21470 0.69 -1.6 37,808 + EX31_RS21470 0.69 +1.0 37,808 + EX31_RS21470 0.69 -0.6 37,808 + EX31_RS21470 0.69 -1.3 37,808 + EX31_RS21470 0.69 -1.8 37,808 + EX31_RS21470 0.69 -2.3 37,809 - EX31_RS21470 0.69 -1.0 37,809 - EX31_RS21470 0.69 -3.1 37,809 - EX31_RS21470 0.69 -3.2 37,809 - EX31_RS21470 0.69 -0.4 37,824 + EX31_RS21470 0.71 -2.5 37,891 + EX31_RS21470 0.76 -2.0 37,908 + EX31_RS21470 0.77 -3.2 37,908 + EX31_RS21470 0.77 +1.0 37,908 + EX31_RS21470 0.77 -1.8 37,908 + EX31_RS21470 0.77 -3.8 37,908 + EX31_RS21470 0.77 -1.8 37,909 - EX31_RS21470 0.77 -1.8 37,909 - EX31_RS21470 0.77 -0.7 37,909 - EX31_RS21470 0.77 -1.0 37,980 + EX31_RS21470 0.83 -1.0 38,059 + EX31_RS21470 0.90 -0.5 38,060 - EX31_RS21470 0.90 -3.5 38,086 + -1.7 38,086 + -2.6 38,086 + -1.3 38,086 + -3.5 38,087 - -0.6 38,119 - -2.3 38,188 + +0.3 38,188 + -0.2 38,188 + -0.4 38,188 + -1.0 38,212 + -1.0 38,212 + -0.7 38,212 + +1.0 38,212 + -0.7 38,212 + +0.3 38,212 + -1.0 38,242 + +1.1 38,242 + -0.2 38,258 + -1.3 38,280 + +1.7 38,280 + -0.6 38,280 + +2.0 38,280 + +1.0 38,281 - +1.3 38,307 - -1.8 38,391 - +0.1 38,456 + +0.7 38,456 + +0.6 38,457 - -1.8 38,457 - -0.3 38,490 - +0.3 38,500 + +1.0 38,500 + -0.2 38,500 + -0.1 38,500 + +1.1 38,500 + -1.0 38,500 + +0.5 38,501 - -1.6 38,501 - -0.6 38,501 - -2.5 38,501 - +2.2 38,537 + EX31_RS21475 0.11 -0.1 38,537 + EX31_RS21475 0.11 -0.4 38,538 - EX31_RS21475 0.11 +0.7 38,714 + EX31_RS21475 0.61 -1.3 38,714 + EX31_RS21475 0.61 -0.6 38,714 + EX31_RS21475 0.61 +0.9 38,714 + EX31_RS21475 0.61 +0.7 38,715 - EX31_RS21475 0.62 -0.9 38,715 - EX31_RS21475 0.62 +1.0 38,754 - EX31_RS21475 0.73 +0.9 38,835 + +0.1 38,835 + -0.0 38,835 + +1.0 38,835 + -2.0 38,835 + +1.4 38,838 + -0.0 38,910 + -0.9 38,911 - -0.6 38,913 + -1.7 38,914 - +0.4 38,914 - +1.0 38,914 - +0.3 38,969 + +1.3 38,988 + -0.6 39,106 + +1.0 39,107 - +1.4 39,107 - -0.0 39,107 - -0.6 39,107 - +1.0 39,109 - +3.0 39,160 - +0.2 39,160 - +1.7 39,187 - EX31_RS21480 0.11 -0.1
Or see this region's nucleotide sequence