Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS20745 and EX31_RS20750 are separated by 220 nucleotides EX31_RS20750 and EX31_RS20755 are separated by 74 nucleotides EX31_RS20755 and EX31_RS20760 are separated by 1 nucleotides EX31_RS20760 and EX31_RS20765 overlap by 1 nucleotides
EX31_RS20745: EX31_RS20745 - NADH:flavin oxidoreductase/NADH oxidase, at 796,737 to 797,834
_RS20745
EX31_RS20750: EX31_RS20750 - SelT/SelW/SelH family protein, at 798,055 to 798,360
_RS20750
EX31_RS20755: EX31_RS20755 - ribokinase, at 798,435 to 799,295
_RS20755
EX31_RS20760: EX31_RS20760 - MurR/RpiR family transcriptional regulator, at 799,297 to 800,154
_RS20760
EX31_RS20765: EX31_RS20765 - ABC transporter permease, at 800,154 to 801,125
_RS20765
Position (kb) 798
799
800 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 797.480 kb on + strand, within EX31_RS20745 at 797.481 kb on - strand, within EX31_RS20745 at 797.481 kb on - strand, within EX31_RS20745 at 797.481 kb on - strand, within EX31_RS20745 at 797.639 kb on + strand, within EX31_RS20745 at 797.639 kb on + strand, within EX31_RS20745 at 797.640 kb on - strand, within EX31_RS20745 at 797.710 kb on + strand, within EX31_RS20745 at 797.711 kb on - strand, within EX31_RS20745 at 797.711 kb on - strand, within EX31_RS20745 at 797.755 kb on + strand at 797.755 kb on + strand at 797.765 kb on + strand at 797.765 kb on + strand at 797.766 kb on - strand at 797.766 kb on - strand at 797.766 kb on - strand at 797.766 kb on - strand at 797.810 kb on + strand at 797.810 kb on + strand at 797.810 kb on + strand at 797.810 kb on + strand at 797.810 kb on + strand at 797.810 kb on + strand at 797.810 kb on + strand at 797.811 kb on - strand at 797.811 kb on - strand at 797.811 kb on - strand at 797.811 kb on - strand at 797.811 kb on - strand at 797.811 kb on - strand at 797.811 kb on - strand at 797.811 kb on - strand at 797.820 kb on - strand at 797.820 kb on - strand at 797.823 kb on + strand at 797.823 kb on + strand at 797.824 kb on - strand at 797.824 kb on - strand at 797.824 kb on - strand at 797.861 kb on + strand at 797.861 kb on + strand at 797.861 kb on + strand at 797.861 kb on + strand at 797.861 kb on + strand at 797.862 kb on - strand at 797.862 kb on - strand at 797.888 kb on + strand at 797.888 kb on + strand at 797.888 kb on + strand at 797.888 kb on + strand at 797.888 kb on + strand at 797.888 kb on + strand at 797.889 kb on - strand at 797.889 kb on - strand at 797.889 kb on - strand at 797.889 kb on - strand at 797.889 kb on - strand at 797.889 kb on - strand at 797.890 kb on + strand at 797.891 kb on - strand at 797.891 kb on - strand at 797.908 kb on + strand at 797.908 kb on + strand at 797.908 kb on + strand at 797.908 kb on + strand at 797.909 kb on - strand at 797.909 kb on - strand at 797.909 kb on - strand at 797.912 kb on - strand at 797.912 kb on - strand at 797.913 kb on + strand at 797.913 kb on + strand at 797.913 kb on + strand at 797.913 kb on + strand at 797.913 kb on + strand at 797.913 kb on + strand at 797.913 kb on + strand at 797.913 kb on + strand at 797.913 kb on + strand at 797.913 kb on + strand at 797.913 kb on + strand at 797.913 kb on + strand at 797.914 kb on - strand at 797.914 kb on - strand at 797.914 kb on - strand at 797.914 kb on - strand at 797.914 kb on - strand at 797.914 kb on - strand at 797.914 kb on - strand at 797.934 kb on - strand at 797.935 kb on + strand at 797.936 kb on - strand at 797.936 kb on - strand at 798.005 kb on - strand at 798.005 kb on - strand at 798.040 kb on + strand at 798.040 kb on + strand at 798.040 kb on + strand at 798.041 kb on - strand at 798.041 kb on - strand at 798.051 kb on + strand at 798.051 kb on + strand at 798.052 kb on - strand at 798.052 kb on - strand at 798.085 kb on + strand at 798.085 kb on + strand at 798.085 kb on + strand at 798.085 kb on + strand at 798.085 kb on + strand at 798.085 kb on + strand at 798.085 kb on + strand at 798.086 kb on - strand, within EX31_RS20750 at 798.086 kb on - strand, within EX31_RS20750 at 798.086 kb on - strand, within EX31_RS20750 at 798.086 kb on - strand, within EX31_RS20750 at 798.086 kb on - strand, within EX31_RS20750 at 798.086 kb on - strand, within EX31_RS20750 at 798.086 kb on - strand, within EX31_RS20750 at 798.086 kb on - strand, within EX31_RS20750 at 798.086 kb on - strand, within EX31_RS20750 at 798.199 kb on + strand, within EX31_RS20750 at 798.199 kb on + strand, within EX31_RS20750 at 798.199 kb on + strand, within EX31_RS20750 at 798.199 kb on + strand, within EX31_RS20750 at 798.226 kb on - strand, within EX31_RS20750 at 798.226 kb on - strand, within EX31_RS20750 at 798.291 kb on + strand, within EX31_RS20750 at 798.369 kb on + strand at 798.413 kb on + strand at 798.413 kb on + strand at 798.414 kb on - strand at 798.536 kb on + strand, within EX31_RS20755 at 798.536 kb on + strand, within EX31_RS20755 at 798.536 kb on + strand, within EX31_RS20755 at 799.026 kb on + strand, within EX31_RS20755 at 799.026 kb on + strand, within EX31_RS20755 at 799.027 kb on - strand, within EX31_RS20755 at 799.027 kb on - strand, within EX31_RS20755 at 799.027 kb on - strand, within EX31_RS20755 at 799.074 kb on + strand, within EX31_RS20755 at 799.074 kb on + strand, within EX31_RS20755 at 799.075 kb on - strand, within EX31_RS20755 at 799.075 kb on - strand, within EX31_RS20755 at 799.190 kb on + strand, within EX31_RS20755 at 799.190 kb on + strand, within EX31_RS20755 at 799.190 kb on + strand, within EX31_RS20755 at 799.191 kb on - strand, within EX31_RS20755 at 799.192 kb on + strand, within EX31_RS20755 at 799.193 kb on - strand, within EX31_RS20755 at 799.193 kb on - strand, within EX31_RS20755 at 799.193 kb on - strand, within EX31_RS20755 at 799.193 kb on - strand, within EX31_RS20755 at 799.193 kb on - strand, within EX31_RS20755 at 799.193 kb on - strand, within EX31_RS20755 at 799.261 kb on + strand at 799.262 kb on - strand at 799.262 kb on - strand at 799.281 kb on + strand at 799.299 kb on - strand at 799.299 kb on - strand at 799.299 kb on - strand at 799.299 kb on - strand at 799.299 kb on - strand at 799.402 kb on - strand, within EX31_RS20760 at 799.508 kb on + strand, within EX31_RS20760 at 799.508 kb on + strand, within EX31_RS20760 at 799.508 kb on + strand, within EX31_RS20760 at 799.508 kb on + strand, within EX31_RS20760 at 799.509 kb on - strand, within EX31_RS20760 at 799.696 kb on - strand, within EX31_RS20760 at 799.739 kb on + strand, within EX31_RS20760 at 799.739 kb on + strand, within EX31_RS20760 at 799.739 kb on + strand, within EX31_RS20760 at 799.740 kb on - strand, within EX31_RS20760 at 799.740 kb on - strand, within EX31_RS20760 at 799.740 kb on - strand, within EX31_RS20760 at 799.740 kb on - strand, within EX31_RS20760 at 799.740 kb on - strand, within EX31_RS20760 at 799.740 kb on - strand, within EX31_RS20760 at 799.740 kb on - strand, within EX31_RS20760 at 799.740 kb on - strand, within EX31_RS20760 at 799.740 kb on - strand, within EX31_RS20760 at 799.742 kb on - strand, within EX31_RS20760 at 799.742 kb on - strand, within EX31_RS20760 at 799.742 kb on - strand, within EX31_RS20760 at 799.742 kb on - strand, within EX31_RS20760 at 799.742 kb on - strand, within EX31_RS20760 at 799.742 kb on - strand, within EX31_RS20760 at 799.742 kb on - strand, within EX31_RS20760 at 799.806 kb on + strand, within EX31_RS20760 at 799.807 kb on - strand, within EX31_RS20760 at 799.807 kb on - strand, within EX31_RS20760 at 799.807 kb on - strand, within EX31_RS20760 at 799.807 kb on - strand, within EX31_RS20760 at 799.807 kb on - strand, within EX31_RS20760 at 799.811 kb on - strand, within EX31_RS20760 at 799.811 kb on - strand, within EX31_RS20760 at 799.834 kb on - strand, within EX31_RS20760 at 799.859 kb on - strand, within EX31_RS20760 at 799.916 kb on + strand, within EX31_RS20760 at 800.156 kb on - strand at 800.156 kb on - strand at 800.156 kb on - strand at 800.156 kb on - strand at 800.191 kb on - strand at 800.196 kb on - strand at 800.198 kb on + strand at 800.199 kb on - strand at 800.199 kb on - strand at 800.202 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 797,480 + EX31_RS20745 0.68 -0.6 797,481 - EX31_RS20745 0.68 -0.8 797,481 - EX31_RS20745 0.68 +0.3 797,481 - EX31_RS20745 0.68 +0.7 797,639 + EX31_RS20745 0.82 -1.1 797,639 + EX31_RS20745 0.82 +0.1 797,640 - EX31_RS20745 0.82 +0.7 797,710 + EX31_RS20745 0.89 +0.9 797,711 - EX31_RS20745 0.89 -0.2 797,711 - EX31_RS20745 0.89 +3.2 797,755 + +1.6 797,755 + +0.1 797,765 + -1.0 797,765 + +0.9 797,766 - -0.3 797,766 - +1.8 797,766 - -0.1 797,766 - +1.0 797,810 + -2.4 797,810 + +0.4 797,810 + -0.2 797,810 + -0.0 797,810 + -0.9 797,810 + +1.9 797,810 + +0.8 797,811 - -1.9 797,811 - -0.7 797,811 - -0.1 797,811 - -2.7 797,811 - +1.5 797,811 - -2.0 797,811 - +0.4 797,811 - -0.9 797,820 - +0.5 797,820 - -2.1 797,823 + -0.0 797,823 + -0.9 797,824 - +0.8 797,824 - +0.6 797,824 - +1.1 797,861 + -0.0 797,861 + -1.9 797,861 + +1.7 797,861 + +0.9 797,861 + +1.9 797,862 - -0.5 797,862 - +0.6 797,888 + +2.1 797,888 + +0.2 797,888 + -0.6 797,888 + +0.6 797,888 + -0.4 797,888 + -0.5 797,889 - -2.1 797,889 - +1.2 797,889 - +0.4 797,889 - +0.1 797,889 - -2.6 797,889 - -0.7 797,890 + -2.0 797,891 - -2.2 797,891 - -0.5 797,908 + +2.7 797,908 + -1.2 797,908 + +0.1 797,908 + -1.7 797,909 - -2.5 797,909 - -0.9 797,909 - -0.4 797,912 - +1.3 797,912 - +0.6 797,913 + -0.3 797,913 + -0.8 797,913 + +0.1 797,913 + +0.1 797,913 + -0.4 797,913 + -1.9 797,913 + -1.5 797,913 + -1.2 797,913 + -0.7 797,913 + -2.5 797,913 + +1.9 797,913 + -0.7 797,914 - -0.5 797,914 - -0.5 797,914 - +0.0 797,914 - -1.2 797,914 - +0.2 797,914 - -0.8 797,914 - -2.7 797,934 - -2.2 797,935 + +0.6 797,936 - +0.3 797,936 - -1.2 798,005 - +1.8 798,005 - -0.9 798,040 + -2.2 798,040 + +0.1 798,040 + -0.1 798,041 - +0.4 798,041 - +2.0 798,051 + -2.4 798,051 + +0.7 798,052 - -2.4 798,052 - +1.5 798,085 + -0.4 798,085 + -0.5 798,085 + -0.9 798,085 + -3.4 798,085 + -0.9 798,085 + +0.1 798,085 + +0.7 798,086 - EX31_RS20750 0.10 +1.4 798,086 - EX31_RS20750 0.10 +0.5 798,086 - EX31_RS20750 0.10 +0.6 798,086 - EX31_RS20750 0.10 +1.1 798,086 - EX31_RS20750 0.10 +0.5 798,086 - EX31_RS20750 0.10 -1.5 798,086 - EX31_RS20750 0.10 -0.1 798,086 - EX31_RS20750 0.10 -0.7 798,086 - EX31_RS20750 0.10 +0.8 798,199 + EX31_RS20750 0.47 +2.3 798,199 + EX31_RS20750 0.47 -0.9 798,199 + EX31_RS20750 0.47 +0.5 798,199 + EX31_RS20750 0.47 +0.1 798,226 - EX31_RS20750 0.56 +0.4 798,226 - EX31_RS20750 0.56 +1.1 798,291 + EX31_RS20750 0.77 -2.6 798,369 + +0.5 798,413 + -1.7 798,413 + +0.7 798,414 - -0.5 798,536 + EX31_RS20755 0.12 -0.3 798,536 + EX31_RS20755 0.12 -1.1 798,536 + EX31_RS20755 0.12 -1.7 799,026 + EX31_RS20755 0.69 +2.4 799,026 + EX31_RS20755 0.69 +0.7 799,027 - EX31_RS20755 0.69 +3.4 799,027 - EX31_RS20755 0.69 -0.3 799,027 - EX31_RS20755 0.69 -1.7 799,074 + EX31_RS20755 0.74 +1.7 799,074 + EX31_RS20755 0.74 -3.2 799,075 - EX31_RS20755 0.74 -1.2 799,075 - EX31_RS20755 0.74 -0.6 799,190 + EX31_RS20755 0.88 -0.7 799,190 + EX31_RS20755 0.88 +1.7 799,190 + EX31_RS20755 0.88 +0.8 799,191 - EX31_RS20755 0.88 -0.1 799,192 + EX31_RS20755 0.88 -0.5 799,193 - EX31_RS20755 0.88 -0.5 799,193 - EX31_RS20755 0.88 +0.6 799,193 - EX31_RS20755 0.88 -0.7 799,193 - EX31_RS20755 0.88 -0.2 799,193 - EX31_RS20755 0.88 +1.3 799,193 - EX31_RS20755 0.88 +0.0 799,261 + +2.5 799,262 - +0.8 799,262 - +0.7 799,281 + -2.1 799,299 - +0.5 799,299 - +1.8 799,299 - +1.1 799,299 - +1.1 799,299 - +0.1 799,402 - EX31_RS20760 0.12 +1.8 799,508 + EX31_RS20760 0.25 +1.2 799,508 + EX31_RS20760 0.25 +1.8 799,508 + EX31_RS20760 0.25 +1.3 799,508 + EX31_RS20760 0.25 +1.8 799,509 - EX31_RS20760 0.25 +2.0 799,696 - EX31_RS20760 0.47 +2.6 799,739 + EX31_RS20760 0.52 +1.7 799,739 + EX31_RS20760 0.52 +1.6 799,739 + EX31_RS20760 0.52 +0.1 799,740 - EX31_RS20760 0.52 +1.5 799,740 - EX31_RS20760 0.52 +0.8 799,740 - EX31_RS20760 0.52 +0.2 799,740 - EX31_RS20760 0.52 +1.4 799,740 - EX31_RS20760 0.52 +2.6 799,740 - EX31_RS20760 0.52 +2.2 799,740 - EX31_RS20760 0.52 +2.0 799,740 - EX31_RS20760 0.52 +0.7 799,740 - EX31_RS20760 0.52 +1.5 799,742 - EX31_RS20760 0.52 +2.7 799,742 - EX31_RS20760 0.52 +1.6 799,742 - EX31_RS20760 0.52 +0.3 799,742 - EX31_RS20760 0.52 +1.6 799,742 - EX31_RS20760 0.52 +0.7 799,742 - EX31_RS20760 0.52 +0.1 799,742 - EX31_RS20760 0.52 +2.5 799,806 + EX31_RS20760 0.59 +0.9 799,807 - EX31_RS20760 0.59 +1.7 799,807 - EX31_RS20760 0.59 +1.5 799,807 - EX31_RS20760 0.59 +0.9 799,807 - EX31_RS20760 0.59 +1.0 799,807 - EX31_RS20760 0.59 +1.4 799,811 - EX31_RS20760 0.60 -1.8 799,811 - EX31_RS20760 0.60 +1.6 799,834 - EX31_RS20760 0.63 +2.4 799,859 - EX31_RS20760 0.66 -1.9 799,916 + EX31_RS20760 0.72 +0.4 800,156 - +0.7 800,156 - +1.2 800,156 - +1.3 800,156 - +1.9 800,191 - +0.1 800,196 - -2.0 800,198 + -1.5 800,199 - -1.7 800,199 - -0.0 800,202 - -0.6
Or see this region's nucleotide sequence