Strain Fitness in Rahnella sp. WP5 around EX31_RS20335

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS20330 and EX31_RS20335 are separated by 245 nucleotidesEX31_RS20335 and EX31_RS20340 overlap by 14 nucleotides EX31_RS20330: EX31_RS20330 - lipid kinase YegS, at 696,130 to 697,017 _RS20330 EX31_RS20335: EX31_RS20335 - MFS transporter, at 697,263 to 698,825 _RS20335 EX31_RS20340: EX31_RS20340 - 3-dehydro-L-gulonate 2-dehydrogenase, at 698,812 to 699,825 _RS20340 Position (kb) 697 698 699Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 696.265 kb on + strand, within EX31_RS20330at 696.265 kb on + strand, within EX31_RS20330at 696.265 kb on + strand, within EX31_RS20330at 696.266 kb on - strand, within EX31_RS20330at 696.282 kb on - strand, within EX31_RS20330at 696.455 kb on + strand, within EX31_RS20330at 696.467 kb on + strand, within EX31_RS20330at 696.468 kb on - strand, within EX31_RS20330at 696.487 kb on - strand, within EX31_RS20330at 696.556 kb on - strand, within EX31_RS20330at 696.556 kb on - strand, within EX31_RS20330at 696.556 kb on - strand, within EX31_RS20330at 696.607 kb on + strand, within EX31_RS20330at 696.626 kb on + strand, within EX31_RS20330at 696.626 kb on + strand, within EX31_RS20330at 696.627 kb on - strand, within EX31_RS20330at 696.663 kb on + strand, within EX31_RS20330at 696.785 kb on + strand, within EX31_RS20330at 696.786 kb on - strand, within EX31_RS20330at 696.786 kb on - strand, within EX31_RS20330at 696.990 kb on - strandat 697.018 kb on + strandat 697.018 kb on + strandat 697.019 kb on - strandat 697.021 kb on + strandat 697.022 kb on - strandat 697.048 kb on - strandat 697.068 kb on - strandat 697.068 kb on - strandat 697.068 kb on - strandat 697.068 kb on - strandat 697.145 kb on + strandat 697.176 kb on + strandat 697.213 kb on + strandat 697.213 kb on + strandat 697.213 kb on + strandat 697.214 kb on - strandat 697.214 kb on - strandat 697.233 kb on - strandat 697.233 kb on - strandat 697.233 kb on - strandat 697.259 kb on + strandat 697.262 kb on + strandat 697.262 kb on + strandat 697.269 kb on - strandat 697.269 kb on - strandat 697.269 kb on - strandat 697.269 kb on - strandat 697.277 kb on + strandat 697.278 kb on - strandat 697.314 kb on + strandat 697.381 kb on - strandat 697.385 kb on + strandat 697.385 kb on + strandat 697.385 kb on + strandat 697.385 kb on + strandat 697.386 kb on - strandat 697.386 kb on - strandat 697.386 kb on - strandat 697.386 kb on - strandat 697.389 kb on + strandat 697.389 kb on + strandat 697.390 kb on - strandat 697.390 kb on - strandat 697.390 kb on - strandat 697.399 kb on + strandat 697.399 kb on + strandat 697.540 kb on + strand, within EX31_RS20335at 697.569 kb on + strand, within EX31_RS20335at 697.570 kb on - strand, within EX31_RS20335at 697.577 kb on + strand, within EX31_RS20335at 697.577 kb on + strand, within EX31_RS20335at 697.577 kb on + strand, within EX31_RS20335at 697.578 kb on - strand, within EX31_RS20335at 697.608 kb on + strand, within EX31_RS20335at 697.609 kb on - strand, within EX31_RS20335at 697.620 kb on + strand, within EX31_RS20335at 697.621 kb on - strand, within EX31_RS20335at 697.621 kb on - strand, within EX31_RS20335at 697.627 kb on + strand, within EX31_RS20335at 697.632 kb on + strand, within EX31_RS20335at 697.632 kb on + strand, within EX31_RS20335at 697.632 kb on + strand, within EX31_RS20335at 697.632 kb on + strand, within EX31_RS20335at 697.642 kb on - strand, within EX31_RS20335at 697.642 kb on - strand, within EX31_RS20335at 697.643 kb on + strand, within EX31_RS20335at 697.643 kb on + strand, within EX31_RS20335at 697.643 kb on + strand, within EX31_RS20335at 697.643 kb on + strand, within EX31_RS20335at 697.644 kb on - strand, within EX31_RS20335at 697.753 kb on + strand, within EX31_RS20335at 697.872 kb on + strand, within EX31_RS20335at 697.879 kb on - strand, within EX31_RS20335at 697.879 kb on - strand, within EX31_RS20335at 697.879 kb on - strand, within EX31_RS20335at 697.955 kb on + strand, within EX31_RS20335at 698.010 kb on + strand, within EX31_RS20335at 698.010 kb on + strand, within EX31_RS20335at 698.010 kb on + strand, within EX31_RS20335at 698.010 kb on + strand, within EX31_RS20335at 698.011 kb on - strand, within EX31_RS20335at 698.011 kb on - strand, within EX31_RS20335at 698.022 kb on + strand, within EX31_RS20335at 698.023 kb on - strand, within EX31_RS20335at 698.066 kb on + strand, within EX31_RS20335at 698.067 kb on - strand, within EX31_RS20335at 698.067 kb on - strand, within EX31_RS20335at 698.149 kb on + strand, within EX31_RS20335at 698.173 kb on + strand, within EX31_RS20335at 698.206 kb on + strand, within EX31_RS20335at 698.206 kb on + strand, within EX31_RS20335at 698.206 kb on + strand, within EX31_RS20335at 698.206 kb on + strand, within EX31_RS20335at 698.207 kb on - strand, within EX31_RS20335at 698.207 kb on - strand, within EX31_RS20335at 698.210 kb on + strand, within EX31_RS20335at 698.210 kb on + strand, within EX31_RS20335at 698.210 kb on + strand, within EX31_RS20335at 698.339 kb on + strand, within EX31_RS20335at 698.339 kb on + strand, within EX31_RS20335at 698.339 kb on + strand, within EX31_RS20335at 698.340 kb on - strand, within EX31_RS20335at 698.340 kb on - strand, within EX31_RS20335at 698.340 kb on - strand, within EX31_RS20335at 698.351 kb on + strand, within EX31_RS20335at 698.449 kb on + strand, within EX31_RS20335at 698.450 kb on - strand, within EX31_RS20335at 698.468 kb on - strand, within EX31_RS20335at 698.539 kb on + strand, within EX31_RS20335at 698.540 kb on - strand, within EX31_RS20335at 698.578 kb on + strand, within EX31_RS20335at 698.578 kb on + strand, within EX31_RS20335at 698.578 kb on + strand, within EX31_RS20335at 698.579 kb on - strand, within EX31_RS20335at 698.580 kb on + strand, within EX31_RS20335at 698.580 kb on + strand, within EX31_RS20335at 698.580 kb on + strand, within EX31_RS20335at 698.580 kb on + strand, within EX31_RS20335at 698.580 kb on + strand, within EX31_RS20335at 698.580 kb on + strand, within EX31_RS20335at 698.580 kb on + strand, within EX31_RS20335at 698.580 kb on + strand, within EX31_RS20335at 698.580 kb on + strand, within EX31_RS20335at 698.580 kb on + strand, within EX31_RS20335at 698.580 kb on + strand, within EX31_RS20335at 698.580 kb on + strand, within EX31_RS20335at 698.581 kb on - strand, within EX31_RS20335at 698.581 kb on - strand, within EX31_RS20335at 698.581 kb on - strand, within EX31_RS20335at 698.581 kb on - strand, within EX31_RS20335at 698.581 kb on - strand, within EX31_RS20335at 698.612 kb on + strand, within EX31_RS20335at 698.612 kb on + strand, within EX31_RS20335at 698.612 kb on + strand, within EX31_RS20335at 698.613 kb on - strand, within EX31_RS20335at 698.613 kb on - strand, within EX31_RS20335at 698.613 kb on - strand, within EX31_RS20335at 698.613 kb on - strand, within EX31_RS20335at 698.613 kb on - strand, within EX31_RS20335at 698.667 kb on + strand, within EX31_RS20335at 698.667 kb on + strand, within EX31_RS20335at 698.668 kb on - strand, within EX31_RS20335at 698.676 kb on - strandat 698.692 kb on + strandat 698.692 kb on + strandat 698.721 kb on + strandat 698.741 kb on + strandat 698.747 kb on + strandat 698.895 kb on + strandat 698.895 kb on + strandat 698.895 kb on + strandat 698.895 kb on + strandat 698.895 kb on + strandat 698.895 kb on + strandat 698.895 kb on + strandat 698.896 kb on - strandat 698.896 kb on - strandat 698.896 kb on - strandat 698.896 kb on - strandat 698.896 kb on - strandat 698.896 kb on - strandat 698.977 kb on + strand, within EX31_RS20340at 698.977 kb on + strand, within EX31_RS20340at 698.978 kb on - strand, within EX31_RS20340at 698.978 kb on - strand, within EX31_RS20340at 698.983 kb on - strand, within EX31_RS20340at 699.001 kb on - strand, within EX31_RS20340at 699.049 kb on + strand, within EX31_RS20340at 699.049 kb on + strand, within EX31_RS20340at 699.049 kb on + strand, within EX31_RS20340at 699.049 kb on + strand, within EX31_RS20340at 699.049 kb on + strand, within EX31_RS20340at 699.049 kb on + strand, within EX31_RS20340at 699.049 kb on + strand, within EX31_RS20340at 699.050 kb on - strand, within EX31_RS20340at 699.050 kb on - strand, within EX31_RS20340at 699.050 kb on - strand, within EX31_RS20340at 699.182 kb on - strand, within EX31_RS20340at 699.243 kb on + strand, within EX31_RS20340at 699.244 kb on - strand, within EX31_RS20340at 699.334 kb on - strand, within EX31_RS20340at 699.349 kb on + strand, within EX31_RS20340at 699.350 kb on - strand, within EX31_RS20340at 699.350 kb on - strand, within EX31_RS20340at 699.350 kb on - strand, within EX31_RS20340at 699.350 kb on - strand, within EX31_RS20340at 699.356 kb on - strand, within EX31_RS20340at 699.361 kb on - strand, within EX31_RS20340at 699.468 kb on + strand, within EX31_RS20340at 699.469 kb on - strand, within EX31_RS20340at 699.469 kb on - strand, within EX31_RS20340at 699.522 kb on + strand, within EX31_RS20340at 699.523 kb on - strand, within EX31_RS20340at 699.536 kb on + strand, within EX31_RS20340at 699.537 kb on - strand, within EX31_RS20340at 699.537 kb on - strand, within EX31_RS20340at 699.537 kb on - strand, within EX31_RS20340at 699.572 kb on + strand, within EX31_RS20340at 699.609 kb on + strand, within EX31_RS20340at 699.679 kb on + strand, within EX31_RS20340at 699.679 kb on + strand, within EX31_RS20340at 699.679 kb on + strand, within EX31_RS20340at 699.680 kb on - strand, within EX31_RS20340at 699.680 kb on - strand, within EX31_RS20340at 699.823 kb on + strandat 699.824 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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696,265 + EX31_RS20330 0.15 -2.1
696,265 + EX31_RS20330 0.15 -0.4
696,265 + EX31_RS20330 0.15 +1.5
696,266 - EX31_RS20330 0.15 -2.6
696,282 - EX31_RS20330 0.17 +2.1
696,455 + EX31_RS20330 0.37 +0.3
696,467 + EX31_RS20330 0.38 -0.1
696,468 - EX31_RS20330 0.38 +0.5
696,487 - EX31_RS20330 0.40 -1.1
696,556 - EX31_RS20330 0.48 +0.1
696,556 - EX31_RS20330 0.48 +1.4
696,556 - EX31_RS20330 0.48 +0.8
696,607 + EX31_RS20330 0.54 +0.6
696,626 + EX31_RS20330 0.56 -2.4
696,626 + EX31_RS20330 0.56 -0.5
696,627 - EX31_RS20330 0.56 +0.1
696,663 + EX31_RS20330 0.60 -0.4
696,785 + EX31_RS20330 0.74 +0.4
696,786 - EX31_RS20330 0.74 +0.9
696,786 - EX31_RS20330 0.74 +0.5
696,990 - -1.3
697,018 + -1.1
697,018 + -1.9
697,019 - -0.1
697,021 + -0.1
697,022 - -0.8
697,048 - -0.4
697,068 - +1.1
697,068 - +0.6
697,068 - -2.6
697,068 - -0.3
697,145 + +0.9
697,176 + +0.2
697,213 + -1.5
697,213 + +0.1
697,213 + +1.4
697,214 - -0.7
697,214 - +0.7
697,233 - -0.4
697,233 - +1.1
697,233 - -0.9
697,259 + +1.2
697,262 + -0.8
697,262 + -1.1
697,269 - -2.5
697,269 - -1.9
697,269 - -1.3
697,269 - +0.2
697,277 + -1.3
697,278 - +0.1
697,314 + +0.4
697,381 - +0.8
697,385 + +0.2
697,385 + -0.8
697,385 + +0.1
697,385 + +1.1
697,386 - -2.5
697,386 - -1.8
697,386 - -1.1
697,386 - +0.1
697,389 + -0.2
697,389 + +1.1
697,390 - +2.1
697,390 - -0.2
697,390 - +3.1
697,399 + -2.9
697,399 + -2.8
697,540 + EX31_RS20335 0.18 -0.4
697,569 + EX31_RS20335 0.20 -0.9
697,570 - EX31_RS20335 0.20 -0.9
697,577 + EX31_RS20335 0.20 +1.2
697,577 + EX31_RS20335 0.20 +1.6
697,577 + EX31_RS20335 0.20 +0.1
697,578 - EX31_RS20335 0.20 -1.5
697,608 + EX31_RS20335 0.22 -1.8
697,609 - EX31_RS20335 0.22 -1.3
697,620 + EX31_RS20335 0.23 +2.3
697,621 - EX31_RS20335 0.23 -0.1
697,621 - EX31_RS20335 0.23 +1.1
697,627 + EX31_RS20335 0.23 +0.9
697,632 + EX31_RS20335 0.24 -1.1
697,632 + EX31_RS20335 0.24 -0.2
697,632 + EX31_RS20335 0.24 +0.9
697,632 + EX31_RS20335 0.24 -2.1
697,642 - EX31_RS20335 0.24 -0.0
697,642 - EX31_RS20335 0.24 +3.4
697,643 + EX31_RS20335 0.24 +0.4
697,643 + EX31_RS20335 0.24 +0.5
697,643 + EX31_RS20335 0.24 +1.9
697,643 + EX31_RS20335 0.24 -1.8
697,644 - EX31_RS20335 0.24 -0.5
697,753 + EX31_RS20335 0.31 -1.4
697,872 + EX31_RS20335 0.39 -1.5
697,879 - EX31_RS20335 0.39 +0.5
697,879 - EX31_RS20335 0.39 +0.1
697,879 - EX31_RS20335 0.39 +0.1
697,955 + EX31_RS20335 0.44 +0.1
698,010 + EX31_RS20335 0.48 -2.2
698,010 + EX31_RS20335 0.48 -2.1
698,010 + EX31_RS20335 0.48 -0.4
698,010 + EX31_RS20335 0.48 +1.7
698,011 - EX31_RS20335 0.48 -2.6
698,011 - EX31_RS20335 0.48 -0.1
698,022 + EX31_RS20335 0.49 -0.4
698,023 - EX31_RS20335 0.49 -2.1
698,066 + EX31_RS20335 0.51 +0.9
698,067 - EX31_RS20335 0.51 -1.3
698,067 - EX31_RS20335 0.51 -1.1
698,149 + EX31_RS20335 0.57 -1.5
698,173 + EX31_RS20335 0.58 -1.4
698,206 + EX31_RS20335 0.60 -1.6
698,206 + EX31_RS20335 0.60 +0.1
698,206 + EX31_RS20335 0.60 +1.3
698,206 + EX31_RS20335 0.60 -1.1
698,207 - EX31_RS20335 0.60 +1.3
698,207 - EX31_RS20335 0.60 -0.5
698,210 + EX31_RS20335 0.61 -1.3
698,210 + EX31_RS20335 0.61 -0.5
698,210 + EX31_RS20335 0.61 +1.3
698,339 + EX31_RS20335 0.69 -1.8
698,339 + EX31_RS20335 0.69 +1.9
698,339 + EX31_RS20335 0.69 -0.2
698,340 - EX31_RS20335 0.69 -0.8
698,340 - EX31_RS20335 0.69 +1.2
698,340 - EX31_RS20335 0.69 -1.8
698,351 + EX31_RS20335 0.70 +0.1
698,449 + EX31_RS20335 0.76 -0.9
698,450 - EX31_RS20335 0.76 -1.1
698,468 - EX31_RS20335 0.77 -1.6
698,539 + EX31_RS20335 0.82 -1.4
698,540 - EX31_RS20335 0.82 -0.7
698,578 + EX31_RS20335 0.84 +0.6
698,578 + EX31_RS20335 0.84 +0.5
698,578 + EX31_RS20335 0.84 -0.6
698,579 - EX31_RS20335 0.84 -1.3
698,580 + EX31_RS20335 0.84 -0.2
698,580 + EX31_RS20335 0.84 -0.9
698,580 + EX31_RS20335 0.84 +0.7
698,580 + EX31_RS20335 0.84 -0.9
698,580 + EX31_RS20335 0.84 +0.1
698,580 + EX31_RS20335 0.84 +0.1
698,580 + EX31_RS20335 0.84 +0.2
698,580 + EX31_RS20335 0.84 -1.8
698,580 + EX31_RS20335 0.84 -3.5
698,580 + EX31_RS20335 0.84 -0.1
698,580 + EX31_RS20335 0.84 +0.8
698,580 + EX31_RS20335 0.84 +0.3
698,581 - EX31_RS20335 0.84 -0.5
698,581 - EX31_RS20335 0.84 -0.3
698,581 - EX31_RS20335 0.84 -1.8
698,581 - EX31_RS20335 0.84 +1.3
698,581 - EX31_RS20335 0.84 -0.5
698,612 + EX31_RS20335 0.86 +0.1
698,612 + EX31_RS20335 0.86 +0.4
698,612 + EX31_RS20335 0.86 -0.9
698,613 - EX31_RS20335 0.86 +0.1
698,613 - EX31_RS20335 0.86 +1.4
698,613 - EX31_RS20335 0.86 -0.5
698,613 - EX31_RS20335 0.86 -0.3
698,613 - EX31_RS20335 0.86 +0.1
698,667 + EX31_RS20335 0.90 +0.1
698,667 + EX31_RS20335 0.90 +1.1
698,668 - EX31_RS20335 0.90 +2.1
698,676 - +3.1
698,692 + +0.1
698,692 + +0.6
698,721 + -0.5
698,741 + -0.2
698,747 + +0.1
698,895 + -0.3
698,895 + -3.2
698,895 + +0.8
698,895 + +0.3
698,895 + +0.1
698,895 + -0.4
698,895 + -0.5
698,896 - -0.8
698,896 - -1.6
698,896 - +1.1
698,896 - +0.8
698,896 - -2.3
698,896 - -2.4
698,977 + EX31_RS20340 0.16 +0.1
698,977 + EX31_RS20340 0.16 +0.9
698,978 - EX31_RS20340 0.16 -2.9
698,978 - EX31_RS20340 0.16 +0.3
698,983 - EX31_RS20340 0.17 -0.4
699,001 - EX31_RS20340 0.19 +0.1
699,049 + EX31_RS20340 0.23 +0.4
699,049 + EX31_RS20340 0.23 -0.9
699,049 + EX31_RS20340 0.23 +1.1
699,049 + EX31_RS20340 0.23 +0.6
699,049 + EX31_RS20340 0.23 -1.5
699,049 + EX31_RS20340 0.23 -0.2
699,049 + EX31_RS20340 0.23 -1.2
699,050 - EX31_RS20340 0.23 -0.4
699,050 - EX31_RS20340 0.23 +1.3
699,050 - EX31_RS20340 0.23 -1.2
699,182 - EX31_RS20340 0.36 +0.8
699,243 + EX31_RS20340 0.43 -0.3
699,244 - EX31_RS20340 0.43 +0.5
699,334 - EX31_RS20340 0.51 -1.8
699,349 + EX31_RS20340 0.53 -0.4
699,350 - EX31_RS20340 0.53 -1.5
699,350 - EX31_RS20340 0.53 +0.6
699,350 - EX31_RS20340 0.53 -1.4
699,350 - EX31_RS20340 0.53 +1.3
699,356 - EX31_RS20340 0.54 +1.4
699,361 - EX31_RS20340 0.54 +1.3
699,468 + EX31_RS20340 0.65 -0.1
699,469 - EX31_RS20340 0.65 -0.8
699,469 - EX31_RS20340 0.65 +0.7
699,522 + EX31_RS20340 0.70 -0.0
699,523 - EX31_RS20340 0.70 +2.2
699,536 + EX31_RS20340 0.71 -1.1
699,537 - EX31_RS20340 0.71 -1.9
699,537 - EX31_RS20340 0.71 +1.3
699,537 - EX31_RS20340 0.71 +0.3
699,572 + EX31_RS20340 0.75 -1.7
699,609 + EX31_RS20340 0.79 +0.7
699,679 + EX31_RS20340 0.86 +1.6
699,679 + EX31_RS20340 0.86 +0.9
699,679 + EX31_RS20340 0.86 -0.9
699,680 - EX31_RS20340 0.86 +3.4
699,680 - EX31_RS20340 0.86 +0.1
699,823 + +1.2
699,824 - +1.2

Or see this region's nucleotide sequence