Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19410 and EX31_RS19415 are separated by 143 nucleotides EX31_RS19415 and EX31_RS19420 overlap by 4 nucleotides EX31_RS19420 and EX31_RS19425 are separated by 38 nucleotides
EX31_RS19410: EX31_RS19410 - NADH-quinone oxidoreductase subunit NuoG, at 508,498 to 511,224
_RS19410
EX31_RS19415: EX31_RS19415 - NADH-quinone oxidoreductase subunit NuoF, at 511,368 to 512,729
_RS19415
EX31_RS19420: EX31_RS19420 - NADH-quinone oxidoreductase subunit NuoE, at 512,726 to 513,226
_RS19420
EX31_RS19425: EX31_RS19425 - NADH-quinone oxidoreductase subunit C/D, at 513,265 to 515,064
_RS19425
Position (kb) 511
512
513 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 510.410 kb on + strand, within EX31_RS19410 at 510.466 kb on - strand, within EX31_RS19410 at 510.466 kb on - strand, within EX31_RS19410 at 510.481 kb on - strand, within EX31_RS19410 at 510.519 kb on + strand, within EX31_RS19410 at 510.519 kb on + strand, within EX31_RS19410 at 510.520 kb on - strand, within EX31_RS19410 at 510.520 kb on - strand, within EX31_RS19410 at 510.520 kb on - strand, within EX31_RS19410 at 510.574 kb on - strand, within EX31_RS19410 at 510.579 kb on + strand, within EX31_RS19410 at 510.580 kb on - strand, within EX31_RS19410 at 510.580 kb on - strand, within EX31_RS19410 at 510.581 kb on + strand, within EX31_RS19410 at 510.582 kb on - strand, within EX31_RS19410 at 510.582 kb on - strand, within EX31_RS19410 at 510.687 kb on - strand, within EX31_RS19410 at 510.743 kb on + strand, within EX31_RS19410 at 510.744 kb on - strand, within EX31_RS19410 at 510.744 kb on - strand, within EX31_RS19410 at 510.744 kb on - strand, within EX31_RS19410 at 510.910 kb on + strand, within EX31_RS19410 at 510.910 kb on + strand, within EX31_RS19410 at 511.023 kb on + strand at 511.024 kb on - strand at 511.024 kb on - strand at 511.024 kb on - strand at 511.024 kb on - strand at 511.024 kb on - strand at 511.024 kb on - strand at 511.024 kb on - strand at 511.024 kb on - strand at 511.024 kb on - strand at 511.187 kb on - strand at 511.194 kb on - strand at 511.208 kb on - strand at 511.208 kb on - strand at 511.208 kb on - strand at 511.292 kb on + strand at 511.292 kb on + strand at 511.293 kb on - strand at 511.293 kb on - strand at 511.293 kb on - strand at 511.293 kb on - strand at 511.293 kb on - strand at 511.293 kb on - strand at 511.294 kb on + strand at 511.295 kb on - strand at 511.295 kb on - strand at 511.295 kb on - strand at 511.295 kb on - strand at 511.370 kb on - strand at 511.429 kb on + strand at 511.430 kb on - strand at 511.430 kb on - strand at 511.430 kb on - strand at 511.430 kb on - strand at 511.430 kb on - strand at 511.430 kb on - strand at 511.430 kb on - strand at 511.430 kb on - strand at 511.430 kb on - strand at 511.430 kb on - strand at 511.430 kb on - strand at 511.476 kb on - strand at 511.650 kb on - strand, within EX31_RS19415 at 511.758 kb on - strand, within EX31_RS19415 at 512.003 kb on + strand, within EX31_RS19415 at 512.012 kb on - strand, within EX31_RS19415 at 512.133 kb on - strand, within EX31_RS19415 at 512.247 kb on - strand, within EX31_RS19415 at 512.310 kb on - strand, within EX31_RS19415 at 512.421 kb on - strand, within EX31_RS19415 at 512.422 kb on + strand, within EX31_RS19415 at 512.422 kb on + strand, within EX31_RS19415 at 512.422 kb on + strand, within EX31_RS19415 at 512.423 kb on - strand, within EX31_RS19415 at 512.423 kb on - strand, within EX31_RS19415 at 512.423 kb on - strand, within EX31_RS19415 at 512.423 kb on - strand, within EX31_RS19415 at 512.451 kb on - strand, within EX31_RS19415 at 512.721 kb on - strand at 512.722 kb on + strand at 512.722 kb on + strand at 512.722 kb on + strand at 512.723 kb on - strand at 512.723 kb on - strand at 512.723 kb on - strand at 512.723 kb on - strand at 512.723 kb on - strand at 512.723 kb on - strand at 512.723 kb on - strand at 512.723 kb on - strand at 512.723 kb on - strand at 512.723 kb on - strand at 512.723 kb on - strand at 513.000 kb on + strand, within EX31_RS19420 at 513.001 kb on - strand, within EX31_RS19420 at 513.001 kb on - strand, within EX31_RS19420 at 513.061 kb on - strand, within EX31_RS19420 at 513.064 kb on + strand, within EX31_RS19420 at 513.065 kb on - strand, within EX31_RS19420 at 513.065 kb on - strand, within EX31_RS19420 at 513.142 kb on - strand, within EX31_RS19420 at 513.142 kb on - strand, within EX31_RS19420 at 513.229 kb on - strand at 513.229 kb on - strand at 513.286 kb on + strand at 513.286 kb on + strand at 513.287 kb on - strand at 513.287 kb on - strand at 513.287 kb on - strand at 513.309 kb on - strand at 513.399 kb on - strand at 513.428 kb on + strand at 513.428 kb on + strand at 513.429 kb on - strand at 513.429 kb on - strand at 513.431 kb on + strand at 513.432 kb on - strand at 513.656 kb on - strand, within EX31_RS19425 at 513.656 kb on - strand, within EX31_RS19425 at 513.678 kb on - strand, within EX31_RS19425
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 510,410 + EX31_RS19410 0.70 -0.6 510,466 - EX31_RS19410 0.72 +1.0 510,466 - EX31_RS19410 0.72 +0.0 510,481 - EX31_RS19410 0.73 -1.3 510,519 + EX31_RS19410 0.74 -1.0 510,519 + EX31_RS19410 0.74 -1.3 510,520 - EX31_RS19410 0.74 -1.0 510,520 - EX31_RS19410 0.74 +1.0 510,520 - EX31_RS19410 0.74 -0.6 510,574 - EX31_RS19410 0.76 -1.6 510,579 + EX31_RS19410 0.76 +1.0 510,580 - EX31_RS19410 0.76 +1.0 510,580 - EX31_RS19410 0.76 -0.6 510,581 + EX31_RS19410 0.76 +0.0 510,582 - EX31_RS19410 0.76 +0.0 510,582 - EX31_RS19410 0.76 +1.0 510,687 - EX31_RS19410 0.80 -1.8 510,743 + EX31_RS19410 0.82 +1.0 510,744 - EX31_RS19410 0.82 +0.0 510,744 - EX31_RS19410 0.82 -3.0 510,744 - EX31_RS19410 0.82 +0.4 510,910 + EX31_RS19410 0.88 +1.0 510,910 + EX31_RS19410 0.88 -0.6 511,023 + +0.0 511,024 - -1.3 511,024 - -1.3 511,024 - -2.3 511,024 - +0.0 511,024 - -0.6 511,024 - -1.4 511,024 - -1.0 511,024 - +1.0 511,024 - -1.3 511,187 - -1.8 511,194 - -2.5 511,208 - -1.0 511,208 - -2.0 511,208 - -1.3 511,292 + -0.6 511,292 + -1.0 511,293 - +0.1 511,293 - -2.5 511,293 - +0.0 511,293 - +0.5 511,293 - +0.7 511,293 - +0.5 511,294 + -1.3 511,295 - -0.5 511,295 - -2.0 511,295 - -1.3 511,295 - +0.5 511,370 - +1.7 511,429 + -2.2 511,430 - -0.6 511,430 - +0.1 511,430 - -0.8 511,430 - -0.6 511,430 - -0.2 511,430 - -1.2 511,430 - +1.6 511,430 - -1.2 511,430 - +1.0 511,430 - +1.4 511,430 - +0.2 511,476 - -0.6 511,650 - EX31_RS19415 0.21 +1.0 511,758 - EX31_RS19415 0.29 -1.3 512,003 + EX31_RS19415 0.47 +1.6 512,012 - EX31_RS19415 0.47 -0.6 512,133 - EX31_RS19415 0.56 +0.8 512,247 - EX31_RS19415 0.65 -2.0 512,310 - EX31_RS19415 0.69 -2.3 512,421 - EX31_RS19415 0.77 +1.0 512,422 + EX31_RS19415 0.77 -0.9 512,422 + EX31_RS19415 0.77 +1.0 512,422 + EX31_RS19415 0.77 +0.0 512,423 - EX31_RS19415 0.77 -2.2 512,423 - EX31_RS19415 0.77 +1.0 512,423 - EX31_RS19415 0.77 +0.0 512,423 - EX31_RS19415 0.77 -0.6 512,451 - EX31_RS19415 0.80 -1.0 512,721 - -1.0 512,722 + +1.4 512,722 + -0.6 512,722 + +2.6 512,723 - -1.0 512,723 - +1.4 512,723 - +1.3 512,723 - +0.0 512,723 - -0.6 512,723 - +1.4 512,723 - -1.0 512,723 - -1.6 512,723 - -1.8 512,723 - -0.7 512,723 - +0.0 513,000 + EX31_RS19420 0.55 -0.6 513,001 - EX31_RS19420 0.55 -3.0 513,001 - EX31_RS19420 0.55 -1.6 513,061 - EX31_RS19420 0.67 +0.0 513,064 + EX31_RS19420 0.67 +0.0 513,065 - EX31_RS19420 0.68 +0.0 513,065 - EX31_RS19420 0.68 +0.0 513,142 - EX31_RS19420 0.83 -0.2 513,142 - EX31_RS19420 0.83 -1.3 513,229 - +0.0 513,229 - -1.0 513,286 + +0.0 513,286 + -1.6 513,287 - +1.0 513,287 - +1.0 513,287 - +1.0 513,309 - -1.3 513,399 - +0.0 513,428 + +0.4 513,428 + +0.0 513,429 - +2.0 513,429 - -0.6 513,431 + -1.0 513,432 - -1.3 513,656 - EX31_RS19425 0.22 -0.6 513,656 - EX31_RS19425 0.22 -1.3 513,678 - EX31_RS19425 0.23 +1.0
Or see this region's nucleotide sequence