Strain Fitness in Rahnella sp. WP5 around EX31_RS19230

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19225 and EX31_RS19230 are separated by 74 nucleotidesEX31_RS19230 and EX31_RS19235 are separated by 219 nucleotides EX31_RS19225: EX31_RS19225 - glutathione S-transferase family protein, at 442,104 to 443,069 _RS19225 EX31_RS19230: EX31_RS19230 - DinI family protein, at 443,144 to 443,386 _RS19230 EX31_RS19235: EX31_RS19235 - cell division protein FtsI, at 443,606 to 445,378 _RS19235 Position (kb) 443 444Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 442.248 kb on + strand, within EX31_RS19225at 442.248 kb on + strand, within EX31_RS19225at 442.248 kb on + strand, within EX31_RS19225at 442.248 kb on + strand, within EX31_RS19225at 442.249 kb on - strand, within EX31_RS19225at 442.249 kb on - strand, within EX31_RS19225at 442.249 kb on - strand, within EX31_RS19225at 442.404 kb on + strand, within EX31_RS19225at 442.405 kb on - strand, within EX31_RS19225at 442.405 kb on - strand, within EX31_RS19225at 442.419 kb on + strand, within EX31_RS19225at 442.419 kb on + strand, within EX31_RS19225at 442.419 kb on + strand, within EX31_RS19225at 442.420 kb on - strand, within EX31_RS19225at 442.420 kb on - strand, within EX31_RS19225at 442.420 kb on - strand, within EX31_RS19225at 442.440 kb on + strand, within EX31_RS19225at 442.440 kb on + strand, within EX31_RS19225at 442.440 kb on + strand, within EX31_RS19225at 442.441 kb on - strand, within EX31_RS19225at 442.441 kb on - strand, within EX31_RS19225at 442.441 kb on - strand, within EX31_RS19225at 442.441 kb on - strand, within EX31_RS19225at 442.453 kb on + strand, within EX31_RS19225at 442.490 kb on + strand, within EX31_RS19225at 442.490 kb on + strand, within EX31_RS19225at 442.491 kb on - strand, within EX31_RS19225at 442.491 kb on - strand, within EX31_RS19225at 442.491 kb on - strand, within EX31_RS19225at 442.491 kb on - strand, within EX31_RS19225at 442.535 kb on + strand, within EX31_RS19225at 442.535 kb on + strand, within EX31_RS19225at 442.535 kb on + strand, within EX31_RS19225at 442.535 kb on + strand, within EX31_RS19225at 442.535 kb on + strand, within EX31_RS19225at 442.536 kb on - strand, within EX31_RS19225at 442.620 kb on + strand, within EX31_RS19225at 442.620 kb on + strand, within EX31_RS19225at 442.644 kb on + strand, within EX31_RS19225at 442.645 kb on - strand, within EX31_RS19225at 442.645 kb on - strand, within EX31_RS19225at 442.645 kb on - strand, within EX31_RS19225at 442.677 kb on + strand, within EX31_RS19225at 442.677 kb on + strand, within EX31_RS19225at 442.746 kb on + strand, within EX31_RS19225at 442.746 kb on + strand, within EX31_RS19225at 442.747 kb on - strand, within EX31_RS19225at 442.761 kb on + strand, within EX31_RS19225at 442.761 kb on + strand, within EX31_RS19225at 442.761 kb on + strand, within EX31_RS19225at 442.761 kb on + strand, within EX31_RS19225at 442.761 kb on + strand, within EX31_RS19225at 442.762 kb on - strand, within EX31_RS19225at 442.763 kb on + strand, within EX31_RS19225at 442.763 kb on + strand, within EX31_RS19225at 442.763 kb on + strand, within EX31_RS19225at 442.763 kb on + strand, within EX31_RS19225at 442.763 kb on + strand, within EX31_RS19225at 442.764 kb on - strand, within EX31_RS19225at 442.764 kb on - strand, within EX31_RS19225at 442.764 kb on - strand, within EX31_RS19225at 442.764 kb on - strand, within EX31_RS19225at 442.764 kb on - strand, within EX31_RS19225at 442.841 kb on + strand, within EX31_RS19225at 442.893 kb on + strand, within EX31_RS19225at 442.934 kb on + strand, within EX31_RS19225at 442.934 kb on + strand, within EX31_RS19225at 442.947 kb on + strand, within EX31_RS19225at 442.947 kb on + strand, within EX31_RS19225at 442.947 kb on + strand, within EX31_RS19225at 442.948 kb on - strand, within EX31_RS19225at 442.950 kb on + strand, within EX31_RS19225at 442.950 kb on + strand, within EX31_RS19225at 442.955 kb on + strand, within EX31_RS19225at 442.960 kb on + strand, within EX31_RS19225at 442.960 kb on + strand, within EX31_RS19225at 442.960 kb on + strand, within EX31_RS19225at 442.961 kb on - strand, within EX31_RS19225at 442.979 kb on + strandat 443.101 kb on - strandat 443.232 kb on + strand, within EX31_RS19230at 443.232 kb on + strand, within EX31_RS19230at 443.260 kb on - strand, within EX31_RS19230at 443.265 kb on + strand, within EX31_RS19230at 443.265 kb on + strand, within EX31_RS19230at 443.265 kb on + strand, within EX31_RS19230at 443.409 kb on + strandat 443.413 kb on + strandat 443.413 kb on + strandat 443.413 kb on + strandat 443.413 kb on + strandat 443.414 kb on - strandat 443.414 kb on - strandat 443.431 kb on + strandat 443.431 kb on + strandat 443.453 kb on + strandat 443.454 kb on - strandat 443.456 kb on + strandat 443.456 kb on + strandat 443.456 kb on + strandat 443.457 kb on - strandat 443.458 kb on + strandat 443.458 kb on + strandat 443.458 kb on + strandat 443.458 kb on + strandat 443.458 kb on + strandat 443.458 kb on + strandat 443.458 kb on + strandat 443.458 kb on + strandat 443.458 kb on + strandat 443.458 kb on + strandat 443.459 kb on - strandat 443.459 kb on - strandat 443.474 kb on + strandat 443.512 kb on + strandat 443.512 kb on + strandat 443.512 kb on + strandat 443.512 kb on + strandat 443.512 kb on + strandat 443.513 kb on - strandat 443.513 kb on - strandat 443.513 kb on - strandat 443.520 kb on + strandat 443.520 kb on + strandat 443.545 kb on + strandat 443.545 kb on + strandat 443.545 kb on + strandat 443.545 kb on + strandat 443.707 kb on - strandat 443.810 kb on - strand, within EX31_RS19235at 443.945 kb on - strand, within EX31_RS19235at 443.945 kb on - strand, within EX31_RS19235at 444.003 kb on - strand, within EX31_RS19235at 444.018 kb on + strand, within EX31_RS19235at 444.019 kb on - strand, within EX31_RS19235at 444.019 kb on - strand, within EX31_RS19235at 444.092 kb on + strand, within EX31_RS19235at 444.092 kb on + strand, within EX31_RS19235at 444.093 kb on - strand, within EX31_RS19235at 444.145 kb on + strand, within EX31_RS19235at 444.145 kb on + strand, within EX31_RS19235at 444.146 kb on - strand, within EX31_RS19235at 444.146 kb on - strand, within EX31_RS19235at 444.146 kb on - strand, within EX31_RS19235at 444.146 kb on - strand, within EX31_RS19235at 444.146 kb on - strand, within EX31_RS19235at 444.179 kb on - strand, within EX31_RS19235at 444.307 kb on + strand, within EX31_RS19235at 444.307 kb on + strand, within EX31_RS19235at 444.307 kb on + strand, within EX31_RS19235at 444.307 kb on + strand, within EX31_RS19235at 444.314 kb on + strand, within EX31_RS19235

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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442,248 + EX31_RS19225 0.15 -0.1
442,248 + EX31_RS19225 0.15 +0.4
442,248 + EX31_RS19225 0.15 +1.4
442,248 + EX31_RS19225 0.15 +2.0
442,249 - EX31_RS19225 0.15 -0.5
442,249 - EX31_RS19225 0.15 +0.2
442,249 - EX31_RS19225 0.15 +0.6
442,404 + EX31_RS19225 0.31 +1.3
442,405 - EX31_RS19225 0.31 +1.0
442,405 - EX31_RS19225 0.31 +1.2
442,419 + EX31_RS19225 0.33 -1.3
442,419 + EX31_RS19225 0.33 +1.2
442,419 + EX31_RS19225 0.33 -2.3
442,420 - EX31_RS19225 0.33 -0.6
442,420 - EX31_RS19225 0.33 -1.3
442,420 - EX31_RS19225 0.33 -1.2
442,440 + EX31_RS19225 0.35 -0.3
442,440 + EX31_RS19225 0.35 -0.3
442,440 + EX31_RS19225 0.35 -2.0
442,441 - EX31_RS19225 0.35 -1.8
442,441 - EX31_RS19225 0.35 +1.3
442,441 - EX31_RS19225 0.35 -0.2
442,441 - EX31_RS19225 0.35 -1.3
442,453 + EX31_RS19225 0.36 +1.0
442,490 + EX31_RS19225 0.40 -1.3
442,490 + EX31_RS19225 0.40 +0.5
442,491 - EX31_RS19225 0.40 -0.2
442,491 - EX31_RS19225 0.40 +1.0
442,491 - EX31_RS19225 0.40 -0.0
442,491 - EX31_RS19225 0.40 +1.7
442,535 + EX31_RS19225 0.45 -2.0
442,535 + EX31_RS19225 0.45 -1.3
442,535 + EX31_RS19225 0.45 -0.6
442,535 + EX31_RS19225 0.45 -0.3
442,535 + EX31_RS19225 0.45 -1.3
442,536 - EX31_RS19225 0.45 -0.0
442,620 + EX31_RS19225 0.53 -0.8
442,620 + EX31_RS19225 0.53 -1.6
442,644 + EX31_RS19225 0.56 -0.3
442,645 - EX31_RS19225 0.56 -0.0
442,645 - EX31_RS19225 0.56 +0.6
442,645 - EX31_RS19225 0.56 +1.0
442,677 + EX31_RS19225 0.59 -0.6
442,677 + EX31_RS19225 0.59 +0.7
442,746 + EX31_RS19225 0.66 -0.0
442,746 + EX31_RS19225 0.66 -2.0
442,747 - EX31_RS19225 0.67 +0.6
442,761 + EX31_RS19225 0.68 -1.0
442,761 + EX31_RS19225 0.68 -1.6
442,761 + EX31_RS19225 0.68 +1.6
442,761 + EX31_RS19225 0.68 -0.6
442,761 + EX31_RS19225 0.68 -1.6
442,762 - EX31_RS19225 0.68 +0.1
442,763 + EX31_RS19225 0.68 -1.3
442,763 + EX31_RS19225 0.68 -2.3
442,763 + EX31_RS19225 0.68 -1.0
442,763 + EX31_RS19225 0.68 +1.9
442,763 + EX31_RS19225 0.68 +0.6
442,764 - EX31_RS19225 0.68 -1.0
442,764 - EX31_RS19225 0.68 -1.3
442,764 - EX31_RS19225 0.68 +1.9
442,764 - EX31_RS19225 0.68 +4.2
442,764 - EX31_RS19225 0.68 +0.1
442,841 + EX31_RS19225 0.76 +0.2
442,893 + EX31_RS19225 0.82 -0.6
442,934 + EX31_RS19225 0.86 +1.7
442,934 + EX31_RS19225 0.86 -0.4
442,947 + EX31_RS19225 0.87 -0.7
442,947 + EX31_RS19225 0.87 +0.4
442,947 + EX31_RS19225 0.87 +1.5
442,948 - EX31_RS19225 0.87 +0.6
442,950 + EX31_RS19225 0.88 +0.4
442,950 + EX31_RS19225 0.88 -2.2
442,955 + EX31_RS19225 0.88 +1.9
442,960 + EX31_RS19225 0.89 -2.2
442,960 + EX31_RS19225 0.89 +1.6
442,960 + EX31_RS19225 0.89 +1.0
442,961 - EX31_RS19225 0.89 -0.4
442,979 + -1.0
443,101 - -1.0
443,232 + EX31_RS19230 0.36 -1.2
443,232 + EX31_RS19230 0.36 -2.3
443,260 - EX31_RS19230 0.48 -2.8
443,265 + EX31_RS19230 0.50 -0.9
443,265 + EX31_RS19230 0.50 -0.8
443,265 + EX31_RS19230 0.50 +1.8
443,409 + +0.2
443,413 + +0.8
443,413 + -0.6
443,413 + -2.2
443,413 + -0.7
443,414 - +0.8
443,414 - +1.0
443,431 + -0.3
443,431 + +1.2
443,453 + +0.4
443,454 - +1.0
443,456 + +1.8
443,456 + -1.6
443,456 + -1.3
443,457 - +1.0
443,458 + +0.4
443,458 + -0.6
443,458 + +0.5
443,458 + -1.0
443,458 + -0.2
443,458 + +0.3
443,458 + +0.4
443,458 + -2.3
443,458 + +0.2
443,458 + +0.3
443,459 - -0.3
443,459 - +0.5
443,474 + -1.0
443,512 + -0.0
443,512 + -1.0
443,512 + -0.2
443,512 + +2.0
443,512 + -1.0
443,513 - -2.2
443,513 - -0.6
443,513 - -0.4
443,520 + +0.2
443,520 + -0.8
443,545 + +1.9
443,545 + +0.6
443,545 + +1.7
443,545 + -0.3
443,707 - +0.2
443,810 - EX31_RS19235 0.12 +0.4
443,945 - EX31_RS19235 0.19 +2.7
443,945 - EX31_RS19235 0.19 -1.0
444,003 - EX31_RS19235 0.22 -1.5
444,018 + EX31_RS19235 0.23 +0.2
444,019 - EX31_RS19235 0.23 +1.0
444,019 - EX31_RS19235 0.23 +1.2
444,092 + EX31_RS19235 0.27 -1.0
444,092 + EX31_RS19235 0.27 +1.0
444,093 - EX31_RS19235 0.27 +2.0
444,145 + EX31_RS19235 0.30 +0.5
444,145 + EX31_RS19235 0.30 +0.4
444,146 - EX31_RS19235 0.30 -1.3
444,146 - EX31_RS19235 0.30 -0.6
444,146 - EX31_RS19235 0.30 -1.3
444,146 - EX31_RS19235 0.30 +0.8
444,146 - EX31_RS19235 0.30 +1.1
444,179 - EX31_RS19235 0.32 -1.0
444,307 + EX31_RS19235 0.40 -0.2
444,307 + EX31_RS19235 0.40 +0.4
444,307 + EX31_RS19235 0.40 -0.4
444,307 + EX31_RS19235 0.40 +0.7
444,314 + EX31_RS19235 0.40 +2.0

Or see this region's nucleotide sequence