Strain Fitness in Rahnella sp. WP5 around EX31_RS19070

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19065 and EX31_RS19070 are separated by 15 nucleotidesEX31_RS19070 and EX31_RS19075 overlap by 4 nucleotides EX31_RS19065: EX31_RS19065 - PTS fructose transporter subunit IIBC, at 404,665 to 406,365 _RS19065 EX31_RS19070: EX31_RS19070 - 1-phosphofructokinase, at 406,381 to 407,316 _RS19070 EX31_RS19075: EX31_RS19075 - fused PTS fructose transporter subunit IIA/HPr protein, at 407,313 to 408,443 _RS19075 Position (kb) 406 407 408Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 405.403 kb on - strand, within EX31_RS19065at 405.403 kb on - strand, within EX31_RS19065at 405.484 kb on - strand, within EX31_RS19065at 405.618 kb on + strand, within EX31_RS19065at 405.653 kb on + strand, within EX31_RS19065at 405.653 kb on + strand, within EX31_RS19065at 405.654 kb on - strand, within EX31_RS19065at 405.654 kb on - strand, within EX31_RS19065at 405.654 kb on - strand, within EX31_RS19065at 405.654 kb on - strand, within EX31_RS19065at 405.654 kb on - strand, within EX31_RS19065at 405.654 kb on - strand, within EX31_RS19065at 405.654 kb on - strand, within EX31_RS19065at 405.654 kb on - strand, within EX31_RS19065at 405.810 kb on + strand, within EX31_RS19065at 405.821 kb on + strand, within EX31_RS19065at 405.822 kb on - strand, within EX31_RS19065at 405.909 kb on + strand, within EX31_RS19065at 405.910 kb on - strand, within EX31_RS19065at 405.912 kb on + strand, within EX31_RS19065at 405.912 kb on + strand, within EX31_RS19065at 405.912 kb on + strand, within EX31_RS19065at 405.912 kb on + strand, within EX31_RS19065at 405.912 kb on + strand, within EX31_RS19065at 405.912 kb on + strand, within EX31_RS19065at 405.913 kb on - strand, within EX31_RS19065at 405.913 kb on - strand, within EX31_RS19065at 405.913 kb on - strand, within EX31_RS19065at 405.913 kb on - strand, within EX31_RS19065at 405.913 kb on - strand, within EX31_RS19065at 405.913 kb on - strand, within EX31_RS19065at 405.928 kb on + strand, within EX31_RS19065at 405.928 kb on + strand, within EX31_RS19065at 405.929 kb on - strand, within EX31_RS19065at 405.929 kb on - strand, within EX31_RS19065at 405.929 kb on - strand, within EX31_RS19065at 405.929 kb on - strand, within EX31_RS19065at 406.002 kb on + strand, within EX31_RS19065at 406.048 kb on - strand, within EX31_RS19065at 406.048 kb on - strand, within EX31_RS19065at 406.103 kb on + strand, within EX31_RS19065at 406.104 kb on - strand, within EX31_RS19065at 406.104 kb on - strand, within EX31_RS19065at 406.104 kb on - strand, within EX31_RS19065at 406.104 kb on - strand, within EX31_RS19065at 406.104 kb on - strand, within EX31_RS19065at 406.104 kb on - strand, within EX31_RS19065at 406.104 kb on - strand, within EX31_RS19065at 406.104 kb on - strand, within EX31_RS19065at 406.104 kb on - strand, within EX31_RS19065at 406.104 kb on - strand, within EX31_RS19065at 406.104 kb on - strand, within EX31_RS19065at 406.104 kb on - strand, within EX31_RS19065at 406.104 kb on - strand, within EX31_RS19065at 406.110 kb on + strand, within EX31_RS19065at 406.110 kb on + strand, within EX31_RS19065at 406.110 kb on + strand, within EX31_RS19065at 406.111 kb on - strand, within EX31_RS19065at 406.111 kb on - strand, within EX31_RS19065at 406.178 kb on + strand, within EX31_RS19065at 406.179 kb on - strand, within EX31_RS19065at 406.182 kb on + strand, within EX31_RS19065at 406.237 kb on + strandat 406.237 kb on + strandat 406.237 kb on + strandat 406.237 kb on + strandat 406.238 kb on - strandat 406.238 kb on - strandat 406.238 kb on - strandat 406.238 kb on - strandat 406.238 kb on - strandat 406.238 kb on - strandat 406.345 kb on + strandat 406.346 kb on - strandat 406.346 kb on - strandat 406.346 kb on - strandat 406.346 kb on - strandat 406.383 kb on - strandat 406.383 kb on - strandat 406.450 kb on - strandat 406.493 kb on - strand, within EX31_RS19070at 406.497 kb on + strand, within EX31_RS19070at 406.497 kb on + strand, within EX31_RS19070at 406.497 kb on + strand, within EX31_RS19070at 406.497 kb on + strand, within EX31_RS19070at 406.498 kb on - strand, within EX31_RS19070at 406.498 kb on - strand, within EX31_RS19070at 406.498 kb on - strand, within EX31_RS19070at 406.498 kb on - strand, within EX31_RS19070at 406.498 kb on - strand, within EX31_RS19070at 406.498 kb on - strand, within EX31_RS19070at 406.498 kb on - strand, within EX31_RS19070at 406.498 kb on - strand, within EX31_RS19070at 406.498 kb on - strand, within EX31_RS19070at 406.498 kb on - strand, within EX31_RS19070at 406.529 kb on + strand, within EX31_RS19070at 406.530 kb on - strand, within EX31_RS19070at 406.530 kb on - strand, within EX31_RS19070at 406.530 kb on - strand, within EX31_RS19070at 406.530 kb on - strand, within EX31_RS19070at 406.699 kb on + strand, within EX31_RS19070at 406.700 kb on - strand, within EX31_RS19070at 406.759 kb on - strand, within EX31_RS19070at 407.043 kb on + strand, within EX31_RS19070at 407.099 kb on - strand, within EX31_RS19070at 407.188 kb on - strand, within EX31_RS19070at 407.188 kb on - strand, within EX31_RS19070at 407.197 kb on - strand, within EX31_RS19070at 407.225 kb on - strandat 407.276 kb on + strandat 407.293 kb on - strandat 407.293 kb on - strandat 407.293 kb on - strandat 407.293 kb on - strandat 407.293 kb on - strandat 407.293 kb on - strandat 407.293 kb on - strandat 407.293 kb on - strandat 407.293 kb on - strandat 407.296 kb on - strandat 407.362 kb on - strandat 407.362 kb on - strandat 407.514 kb on - strand, within EX31_RS19075at 407.516 kb on + strand, within EX31_RS19075at 407.517 kb on - strand, within EX31_RS19075at 407.575 kb on + strand, within EX31_RS19075at 407.575 kb on + strand, within EX31_RS19075at 407.575 kb on + strand, within EX31_RS19075at 407.576 kb on - strand, within EX31_RS19075at 407.576 kb on - strand, within EX31_RS19075at 407.576 kb on - strand, within EX31_RS19075at 407.576 kb on - strand, within EX31_RS19075at 407.576 kb on - strand, within EX31_RS19075at 407.576 kb on - strand, within EX31_RS19075at 407.576 kb on - strand, within EX31_RS19075at 407.695 kb on + strand, within EX31_RS19075at 407.696 kb on - strand, within EX31_RS19075at 407.696 kb on - strand, within EX31_RS19075at 407.696 kb on - strand, within EX31_RS19075at 407.696 kb on - strand, within EX31_RS19075at 407.696 kb on - strand, within EX31_RS19075at 407.867 kb on + strand, within EX31_RS19075at 407.867 kb on + strand, within EX31_RS19075at 407.868 kb on - strand, within EX31_RS19075at 408.094 kb on - strand, within EX31_RS19075at 408.094 kb on - strand, within EX31_RS19075at 408.163 kb on + strand, within EX31_RS19075at 408.163 kb on + strand, within EX31_RS19075at 408.164 kb on - strand, within EX31_RS19075at 408.164 kb on - strand, within EX31_RS19075at 408.164 kb on - strand, within EX31_RS19075at 408.164 kb on - strand, within EX31_RS19075at 408.164 kb on - strand, within EX31_RS19075at 408.164 kb on - strand, within EX31_RS19075at 408.164 kb on - strand, within EX31_RS19075at 408.164 kb on - strand, within EX31_RS19075at 408.164 kb on - strand, within EX31_RS19075at 408.164 kb on - strand, within EX31_RS19075at 408.164 kb on - strand, within EX31_RS19075at 408.189 kb on - strand, within EX31_RS19075at 408.189 kb on - strand, within EX31_RS19075at 408.246 kb on - strand, within EX31_RS19075at 408.286 kb on + strand, within EX31_RS19075at 408.286 kb on + strand, within EX31_RS19075at 408.287 kb on - strand, within EX31_RS19075at 408.287 kb on - strand, within EX31_RS19075at 408.287 kb on - strand, within EX31_RS19075at 408.287 kb on - strand, within EX31_RS19075at 408.287 kb on - strand, within EX31_RS19075at 408.287 kb on - strand, within EX31_RS19075at 408.287 kb on - strand, within EX31_RS19075at 408.290 kb on + strand, within EX31_RS19075at 408.290 kb on + strand, within EX31_RS19075at 408.290 kb on + strand, within EX31_RS19075at 408.291 kb on - strand, within EX31_RS19075at 408.291 kb on - strand, within EX31_RS19075at 408.291 kb on - strand, within EX31_RS19075at 408.291 kb on - strand, within EX31_RS19075at 408.291 kb on - strand, within EX31_RS19075at 408.291 kb on - strand, within EX31_RS19075

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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405,403 - EX31_RS19065 0.43 +0.9
405,403 - EX31_RS19065 0.43 +1.0
405,484 - EX31_RS19065 0.48 -0.6
405,618 + EX31_RS19065 0.56 -1.0
405,653 + EX31_RS19065 0.58 +0.9
405,653 + EX31_RS19065 0.58 -0.0
405,654 - EX31_RS19065 0.58 +2.8
405,654 - EX31_RS19065 0.58 -1.8
405,654 - EX31_RS19065 0.58 +1.0
405,654 - EX31_RS19065 0.58 +0.6
405,654 - EX31_RS19065 0.58 +0.4
405,654 - EX31_RS19065 0.58 +0.1
405,654 - EX31_RS19065 0.58 -1.1
405,654 - EX31_RS19065 0.58 +0.8
405,810 + EX31_RS19065 0.67 +2.0
405,821 + EX31_RS19065 0.68 -1.2
405,822 - EX31_RS19065 0.68 +1.4
405,909 + EX31_RS19065 0.73 +2.0
405,910 - EX31_RS19065 0.73 -1.8
405,912 + EX31_RS19065 0.73 -0.4
405,912 + EX31_RS19065 0.73 +0.3
405,912 + EX31_RS19065 0.73 -1.0
405,912 + EX31_RS19065 0.73 +0.2
405,912 + EX31_RS19065 0.73 +2.3
405,912 + EX31_RS19065 0.73 -0.0
405,913 - EX31_RS19065 0.73 +0.4
405,913 - EX31_RS19065 0.73 +0.8
405,913 - EX31_RS19065 0.73 -2.1
405,913 - EX31_RS19065 0.73 -0.5
405,913 - EX31_RS19065 0.73 -1.0
405,913 - EX31_RS19065 0.73 -1.0
405,928 + EX31_RS19065 0.74 +0.9
405,928 + EX31_RS19065 0.74 -0.2
405,929 - EX31_RS19065 0.74 -1.1
405,929 - EX31_RS19065 0.74 -0.2
405,929 - EX31_RS19065 0.74 -1.5
405,929 - EX31_RS19065 0.74 +0.4
406,002 + EX31_RS19065 0.79 -2.3
406,048 - EX31_RS19065 0.81 -0.2
406,048 - EX31_RS19065 0.81 +0.7
406,103 + EX31_RS19065 0.85 +0.4
406,104 - EX31_RS19065 0.85 -0.6
406,104 - EX31_RS19065 0.85 -0.1
406,104 - EX31_RS19065 0.85 +1.1
406,104 - EX31_RS19065 0.85 -1.0
406,104 - EX31_RS19065 0.85 -2.5
406,104 - EX31_RS19065 0.85 -1.0
406,104 - EX31_RS19065 0.85 -1.0
406,104 - EX31_RS19065 0.85 -2.9
406,104 - EX31_RS19065 0.85 +0.6
406,104 - EX31_RS19065 0.85 +1.2
406,104 - EX31_RS19065 0.85 -0.2
406,104 - EX31_RS19065 0.85 +0.2
406,104 - EX31_RS19065 0.85 +0.8
406,110 + EX31_RS19065 0.85 -1.6
406,110 + EX31_RS19065 0.85 -0.3
406,110 + EX31_RS19065 0.85 -0.0
406,111 - EX31_RS19065 0.85 +0.7
406,111 - EX31_RS19065 0.85 -1.4
406,178 + EX31_RS19065 0.89 +0.1
406,179 - EX31_RS19065 0.89 +0.3
406,182 + EX31_RS19065 0.89 -2.2
406,237 + -1.8
406,237 + +1.0
406,237 + -0.6
406,237 + -1.0
406,238 - -0.6
406,238 - -0.4
406,238 - +1.0
406,238 - -2.6
406,238 - +1.1
406,238 - +0.3
406,345 + +1.7
406,346 - +0.7
406,346 - -0.8
406,346 - -0.3
406,346 - +2.8
406,383 - +0.7
406,383 - -0.6
406,450 - +0.4
406,493 - EX31_RS19070 0.12 +0.3
406,497 + EX31_RS19070 0.12 -0.6
406,497 + EX31_RS19070 0.12 +1.0
406,497 + EX31_RS19070 0.12 +2.4
406,497 + EX31_RS19070 0.12 +2.0
406,498 - EX31_RS19070 0.12 -1.0
406,498 - EX31_RS19070 0.12 +0.8
406,498 - EX31_RS19070 0.12 +0.2
406,498 - EX31_RS19070 0.12 -0.2
406,498 - EX31_RS19070 0.12 -0.6
406,498 - EX31_RS19070 0.12 -0.8
406,498 - EX31_RS19070 0.12 -2.5
406,498 - EX31_RS19070 0.12 -0.4
406,498 - EX31_RS19070 0.12 -0.2
406,498 - EX31_RS19070 0.12 +0.1
406,529 + EX31_RS19070 0.16 +1.6
406,530 - EX31_RS19070 0.16 +0.8
406,530 - EX31_RS19070 0.16 +0.8
406,530 - EX31_RS19070 0.16 +0.7
406,530 - EX31_RS19070 0.16 -0.6
406,699 + EX31_RS19070 0.34 +1.0
406,700 - EX31_RS19070 0.34 +0.1
406,759 - EX31_RS19070 0.40 +0.1
407,043 + EX31_RS19070 0.71 -0.0
407,099 - EX31_RS19070 0.77 +0.7
407,188 - EX31_RS19070 0.86 +0.4
407,188 - EX31_RS19070 0.86 -0.4
407,197 - EX31_RS19070 0.87 +0.7
407,225 - +1.1
407,276 + -1.0
407,293 - +1.2
407,293 - +0.6
407,293 - -1.8
407,293 - +0.2
407,293 - -1.8
407,293 - +1.6
407,293 - +0.9
407,293 - +0.4
407,293 - +1.0
407,296 - +1.2
407,362 - +0.5
407,362 - +0.8
407,514 - EX31_RS19075 0.18 +0.3
407,516 + EX31_RS19075 0.18 -0.1
407,517 - EX31_RS19075 0.18 +0.2
407,575 + EX31_RS19075 0.23 +0.4
407,575 + EX31_RS19075 0.23 -0.6
407,575 + EX31_RS19075 0.23 +1.6
407,576 - EX31_RS19075 0.23 -0.0
407,576 - EX31_RS19075 0.23 +1.2
407,576 - EX31_RS19075 0.23 -0.4
407,576 - EX31_RS19075 0.23 -0.0
407,576 - EX31_RS19075 0.23 -0.4
407,576 - EX31_RS19075 0.23 -0.4
407,576 - EX31_RS19075 0.23 -2.6
407,695 + EX31_RS19075 0.34 -1.1
407,696 - EX31_RS19075 0.34 +0.7
407,696 - EX31_RS19075 0.34 -1.3
407,696 - EX31_RS19075 0.34 -0.3
407,696 - EX31_RS19075 0.34 +0.5
407,696 - EX31_RS19075 0.34 +0.2
407,867 + EX31_RS19075 0.49 +0.7
407,867 + EX31_RS19075 0.49 -0.9
407,868 - EX31_RS19075 0.49 -0.3
408,094 - EX31_RS19075 0.69 -0.6
408,094 - EX31_RS19075 0.69 +0.8
408,163 + EX31_RS19075 0.75 +1.7
408,163 + EX31_RS19075 0.75 +0.8
408,164 - EX31_RS19075 0.75 +0.2
408,164 - EX31_RS19075 0.75 -2.8
408,164 - EX31_RS19075 0.75 -0.2
408,164 - EX31_RS19075 0.75 +1.5
408,164 - EX31_RS19075 0.75 +0.3
408,164 - EX31_RS19075 0.75 -0.4
408,164 - EX31_RS19075 0.75 -1.4
408,164 - EX31_RS19075 0.75 +1.0
408,164 - EX31_RS19075 0.75 +1.2
408,164 - EX31_RS19075 0.75 +1.3
408,164 - EX31_RS19075 0.75 +1.1
408,189 - EX31_RS19075 0.77 +0.1
408,189 - EX31_RS19075 0.77 -0.1
408,246 - EX31_RS19075 0.82 -1.3
408,286 + EX31_RS19075 0.86 +0.4
408,286 + EX31_RS19075 0.86 +1.2
408,287 - EX31_RS19075 0.86 +0.3
408,287 - EX31_RS19075 0.86 -0.0
408,287 - EX31_RS19075 0.86 -0.6
408,287 - EX31_RS19075 0.86 +0.4
408,287 - EX31_RS19075 0.86 +1.3
408,287 - EX31_RS19075 0.86 +0.7
408,287 - EX31_RS19075 0.86 +0.1
408,290 + EX31_RS19075 0.86 +0.7
408,290 + EX31_RS19075 0.86 +1.0
408,290 + EX31_RS19075 0.86 -1.3
408,291 - EX31_RS19075 0.86 +0.4
408,291 - EX31_RS19075 0.86 +1.7
408,291 - EX31_RS19075 0.86 +1.2
408,291 - EX31_RS19075 0.86 +1.0
408,291 - EX31_RS19075 0.86 +0.4
408,291 - EX31_RS19075 0.86 -0.4

Or see this region's nucleotide sequence