Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19060 and EX31_RS19065 are separated by 106 nucleotides EX31_RS19065 and EX31_RS19070 are separated by 15 nucleotides EX31_RS19070 and EX31_RS19075 overlap by 4 nucleotides
EX31_RS19060: EX31_RS19060 - deoxyribonuclease IV, at 403,692 to 404,558
_RS19060
EX31_RS19065: EX31_RS19065 - PTS fructose transporter subunit IIBC, at 404,665 to 406,365
_RS19065
EX31_RS19070: EX31_RS19070 - 1-phosphofructokinase, at 406,381 to 407,316
_RS19070
EX31_RS19075: EX31_RS19075 - fused PTS fructose transporter subunit IIA/HPr protein, at 407,313 to 408,443
_RS19075
Position (kb) 404
405
406
407 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 403.677 kb on - strand at 403.866 kb on + strand, within EX31_RS19060 at 403.867 kb on - strand, within EX31_RS19060 at 403.905 kb on + strand, within EX31_RS19060 at 403.905 kb on + strand, within EX31_RS19060 at 403.906 kb on - strand, within EX31_RS19060 at 403.906 kb on - strand, within EX31_RS19060 at 404.051 kb on + strand, within EX31_RS19060 at 404.051 kb on + strand, within EX31_RS19060 at 404.052 kb on - strand, within EX31_RS19060 at 404.183 kb on + strand, within EX31_RS19060 at 404.184 kb on - strand, within EX31_RS19060 at 404.322 kb on + strand, within EX31_RS19060 at 404.333 kb on + strand, within EX31_RS19060 at 404.333 kb on + strand, within EX31_RS19060 at 404.333 kb on + strand, within EX31_RS19060 at 404.334 kb on - strand, within EX31_RS19060 at 404.419 kb on + strand, within EX31_RS19060 at 404.419 kb on + strand, within EX31_RS19060 at 404.419 kb on + strand, within EX31_RS19060 at 404.419 kb on + strand, within EX31_RS19060 at 404.419 kb on + strand, within EX31_RS19060 at 404.420 kb on - strand, within EX31_RS19060 at 404.423 kb on + strand, within EX31_RS19060 at 404.423 kb on + strand, within EX31_RS19060 at 404.424 kb on - strand, within EX31_RS19060 at 404.556 kb on + strand at 404.557 kb on - strand at 404.660 kb on + strand at 404.666 kb on + strand at 404.667 kb on - strand at 404.717 kb on + strand at 404.941 kb on - strand, within EX31_RS19065 at 405.000 kb on + strand, within EX31_RS19065 at 405.000 kb on + strand, within EX31_RS19065 at 405.000 kb on + strand, within EX31_RS19065 at 405.000 kb on + strand, within EX31_RS19065 at 405.001 kb on - strand, within EX31_RS19065 at 405.001 kb on - strand, within EX31_RS19065 at 405.080 kb on + strand, within EX31_RS19065 at 405.080 kb on + strand, within EX31_RS19065 at 405.080 kb on + strand, within EX31_RS19065 at 405.117 kb on - strand, within EX31_RS19065 at 405.151 kb on - strand, within EX31_RS19065 at 405.151 kb on - strand, within EX31_RS19065 at 405.151 kb on - strand, within EX31_RS19065 at 405.253 kb on - strand, within EX31_RS19065 at 405.263 kb on + strand, within EX31_RS19065 at 405.263 kb on + strand, within EX31_RS19065 at 405.263 kb on + strand, within EX31_RS19065 at 405.263 kb on + strand, within EX31_RS19065 at 405.263 kb on + strand, within EX31_RS19065 at 405.263 kb on + strand, within EX31_RS19065 at 405.264 kb on - strand, within EX31_RS19065 at 405.264 kb on - strand, within EX31_RS19065 at 405.264 kb on - strand, within EX31_RS19065 at 405.315 kb on + strand, within EX31_RS19065 at 405.316 kb on - strand, within EX31_RS19065 at 405.316 kb on - strand, within EX31_RS19065 at 405.316 kb on - strand, within EX31_RS19065 at 405.333 kb on + strand, within EX31_RS19065 at 405.333 kb on + strand, within EX31_RS19065 at 405.333 kb on + strand, within EX31_RS19065 at 405.377 kb on + strand, within EX31_RS19065 at 405.378 kb on - strand, within EX31_RS19065 at 405.378 kb on - strand, within EX31_RS19065 at 405.378 kb on - strand, within EX31_RS19065 at 405.378 kb on - strand, within EX31_RS19065 at 405.403 kb on - strand, within EX31_RS19065 at 405.403 kb on - strand, within EX31_RS19065 at 405.484 kb on - strand, within EX31_RS19065 at 405.618 kb on + strand, within EX31_RS19065 at 405.653 kb on + strand, within EX31_RS19065 at 405.653 kb on + strand, within EX31_RS19065 at 405.654 kb on - strand, within EX31_RS19065 at 405.654 kb on - strand, within EX31_RS19065 at 405.654 kb on - strand, within EX31_RS19065 at 405.654 kb on - strand, within EX31_RS19065 at 405.654 kb on - strand, within EX31_RS19065 at 405.654 kb on - strand, within EX31_RS19065 at 405.654 kb on - strand, within EX31_RS19065 at 405.654 kb on - strand, within EX31_RS19065 at 405.810 kb on + strand, within EX31_RS19065 at 405.821 kb on + strand, within EX31_RS19065 at 405.822 kb on - strand, within EX31_RS19065 at 405.909 kb on + strand, within EX31_RS19065 at 405.910 kb on - strand, within EX31_RS19065 at 405.912 kb on + strand, within EX31_RS19065 at 405.912 kb on + strand, within EX31_RS19065 at 405.912 kb on + strand, within EX31_RS19065 at 405.912 kb on + strand, within EX31_RS19065 at 405.912 kb on + strand, within EX31_RS19065 at 405.912 kb on + strand, within EX31_RS19065 at 405.913 kb on - strand, within EX31_RS19065 at 405.913 kb on - strand, within EX31_RS19065 at 405.913 kb on - strand, within EX31_RS19065 at 405.913 kb on - strand, within EX31_RS19065 at 405.913 kb on - strand, within EX31_RS19065 at 405.913 kb on - strand, within EX31_RS19065 at 405.928 kb on + strand, within EX31_RS19065 at 405.928 kb on + strand, within EX31_RS19065 at 405.929 kb on - strand, within EX31_RS19065 at 405.929 kb on - strand, within EX31_RS19065 at 405.929 kb on - strand, within EX31_RS19065 at 405.929 kb on - strand, within EX31_RS19065 at 406.002 kb on + strand, within EX31_RS19065 at 406.048 kb on - strand, within EX31_RS19065 at 406.048 kb on - strand, within EX31_RS19065 at 406.103 kb on + strand, within EX31_RS19065 at 406.104 kb on - strand, within EX31_RS19065 at 406.104 kb on - strand, within EX31_RS19065 at 406.104 kb on - strand, within EX31_RS19065 at 406.104 kb on - strand, within EX31_RS19065 at 406.104 kb on - strand, within EX31_RS19065 at 406.104 kb on - strand, within EX31_RS19065 at 406.104 kb on - strand, within EX31_RS19065 at 406.104 kb on - strand, within EX31_RS19065 at 406.104 kb on - strand, within EX31_RS19065 at 406.104 kb on - strand, within EX31_RS19065 at 406.104 kb on - strand, within EX31_RS19065 at 406.104 kb on - strand, within EX31_RS19065 at 406.104 kb on - strand, within EX31_RS19065 at 406.110 kb on + strand, within EX31_RS19065 at 406.110 kb on + strand, within EX31_RS19065 at 406.110 kb on + strand, within EX31_RS19065 at 406.111 kb on - strand, within EX31_RS19065 at 406.111 kb on - strand, within EX31_RS19065 at 406.178 kb on + strand, within EX31_RS19065 at 406.179 kb on - strand, within EX31_RS19065 at 406.182 kb on + strand, within EX31_RS19065 at 406.237 kb on + strand at 406.237 kb on + strand at 406.237 kb on + strand at 406.237 kb on + strand at 406.238 kb on - strand at 406.238 kb on - strand at 406.238 kb on - strand at 406.238 kb on - strand at 406.238 kb on - strand at 406.238 kb on - strand at 406.345 kb on + strand at 406.346 kb on - strand at 406.346 kb on - strand at 406.346 kb on - strand at 406.346 kb on - strand at 406.383 kb on - strand at 406.383 kb on - strand at 406.450 kb on - strand at 406.493 kb on - strand, within EX31_RS19070 at 406.497 kb on + strand, within EX31_RS19070 at 406.497 kb on + strand, within EX31_RS19070 at 406.497 kb on + strand, within EX31_RS19070 at 406.497 kb on + strand, within EX31_RS19070 at 406.498 kb on - strand, within EX31_RS19070 at 406.498 kb on - strand, within EX31_RS19070 at 406.498 kb on - strand, within EX31_RS19070 at 406.498 kb on - strand, within EX31_RS19070 at 406.498 kb on - strand, within EX31_RS19070 at 406.498 kb on - strand, within EX31_RS19070 at 406.498 kb on - strand, within EX31_RS19070 at 406.498 kb on - strand, within EX31_RS19070 at 406.498 kb on - strand, within EX31_RS19070 at 406.498 kb on - strand, within EX31_RS19070 at 406.529 kb on + strand, within EX31_RS19070 at 406.530 kb on - strand, within EX31_RS19070 at 406.530 kb on - strand, within EX31_RS19070 at 406.530 kb on - strand, within EX31_RS19070 at 406.530 kb on - strand, within EX31_RS19070 at 406.699 kb on + strand, within EX31_RS19070 at 406.700 kb on - strand, within EX31_RS19070 at 406.759 kb on - strand, within EX31_RS19070 at 407.043 kb on + strand, within EX31_RS19070 at 407.099 kb on - strand, within EX31_RS19070 at 407.188 kb on - strand, within EX31_RS19070 at 407.188 kb on - strand, within EX31_RS19070 at 407.197 kb on - strand, within EX31_RS19070 at 407.225 kb on - strand at 407.276 kb on + strand at 407.293 kb on - strand at 407.293 kb on - strand at 407.293 kb on - strand at 407.293 kb on - strand at 407.293 kb on - strand at 407.293 kb on - strand at 407.293 kb on - strand at 407.293 kb on - strand at 407.293 kb on - strand at 407.296 kb on - strand at 407.362 kb on - strand at 407.362 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 403,677 - -0.0 403,866 + EX31_RS19060 0.20 +0.1 403,867 - EX31_RS19060 0.20 -2.7 403,905 + EX31_RS19060 0.25 -0.2 403,905 + EX31_RS19060 0.25 +0.4 403,906 - EX31_RS19060 0.25 +1.2 403,906 - EX31_RS19060 0.25 +1.7 404,051 + EX31_RS19060 0.41 +0.4 404,051 + EX31_RS19060 0.41 +2.1 404,052 - EX31_RS19060 0.42 +1.1 404,183 + EX31_RS19060 0.57 +0.4 404,184 - EX31_RS19060 0.57 +1.0 404,322 + EX31_RS19060 0.73 +2.4 404,333 + EX31_RS19060 0.74 -0.8 404,333 + EX31_RS19060 0.74 -0.2 404,333 + EX31_RS19060 0.74 -0.0 404,334 - EX31_RS19060 0.74 +1.0 404,419 + EX31_RS19060 0.84 -0.3 404,419 + EX31_RS19060 0.84 -0.0 404,419 + EX31_RS19060 0.84 +0.7 404,419 + EX31_RS19060 0.84 -0.3 404,419 + EX31_RS19060 0.84 -0.2 404,420 - EX31_RS19060 0.84 -0.1 404,423 + EX31_RS19060 0.84 +0.5 404,423 + EX31_RS19060 0.84 -0.6 404,424 - EX31_RS19060 0.84 +1.0 404,556 + -2.5 404,557 - -0.0 404,660 + -0.8 404,666 + +0.8 404,667 - -0.1 404,717 + +3.1 404,941 - EX31_RS19065 0.16 +1.3 405,000 + EX31_RS19065 0.20 +1.0 405,000 + EX31_RS19065 0.20 -2.7 405,000 + EX31_RS19065 0.20 +1.1 405,000 + EX31_RS19065 0.20 +1.4 405,001 - EX31_RS19065 0.20 -0.1 405,001 - EX31_RS19065 0.20 -1.7 405,080 + EX31_RS19065 0.24 -1.6 405,080 + EX31_RS19065 0.24 +0.4 405,080 + EX31_RS19065 0.24 -1.3 405,117 - EX31_RS19065 0.27 -1.0 405,151 - EX31_RS19065 0.29 +3.6 405,151 - EX31_RS19065 0.29 +1.1 405,151 - EX31_RS19065 0.29 +1.3 405,253 - EX31_RS19065 0.35 -1.7 405,263 + EX31_RS19065 0.35 +0.3 405,263 + EX31_RS19065 0.35 +0.3 405,263 + EX31_RS19065 0.35 -0.5 405,263 + EX31_RS19065 0.35 -0.0 405,263 + EX31_RS19065 0.35 -0.5 405,263 + EX31_RS19065 0.35 +2.1 405,264 - EX31_RS19065 0.35 +1.4 405,264 - EX31_RS19065 0.35 -2.0 405,264 - EX31_RS19065 0.35 +0.2 405,315 + EX31_RS19065 0.38 -0.3 405,316 - EX31_RS19065 0.38 +0.9 405,316 - EX31_RS19065 0.38 +0.4 405,316 - EX31_RS19065 0.38 +0.2 405,333 + EX31_RS19065 0.39 -1.0 405,333 + EX31_RS19065 0.39 -0.0 405,333 + EX31_RS19065 0.39 -1.0 405,377 + EX31_RS19065 0.42 -1.8 405,378 - EX31_RS19065 0.42 -0.0 405,378 - EX31_RS19065 0.42 +0.4 405,378 - EX31_RS19065 0.42 +1.1 405,378 - EX31_RS19065 0.42 -2.0 405,403 - EX31_RS19065 0.43 +0.9 405,403 - EX31_RS19065 0.43 +1.0 405,484 - EX31_RS19065 0.48 -0.6 405,618 + EX31_RS19065 0.56 -1.0 405,653 + EX31_RS19065 0.58 +0.9 405,653 + EX31_RS19065 0.58 -0.0 405,654 - EX31_RS19065 0.58 +2.8 405,654 - EX31_RS19065 0.58 -1.8 405,654 - EX31_RS19065 0.58 +1.0 405,654 - EX31_RS19065 0.58 +0.6 405,654 - EX31_RS19065 0.58 +0.4 405,654 - EX31_RS19065 0.58 +0.1 405,654 - EX31_RS19065 0.58 -1.1 405,654 - EX31_RS19065 0.58 +0.8 405,810 + EX31_RS19065 0.67 +2.0 405,821 + EX31_RS19065 0.68 -1.2 405,822 - EX31_RS19065 0.68 +1.4 405,909 + EX31_RS19065 0.73 +2.0 405,910 - EX31_RS19065 0.73 -1.8 405,912 + EX31_RS19065 0.73 -0.4 405,912 + EX31_RS19065 0.73 +0.3 405,912 + EX31_RS19065 0.73 -1.0 405,912 + EX31_RS19065 0.73 +0.2 405,912 + EX31_RS19065 0.73 +2.3 405,912 + EX31_RS19065 0.73 -0.0 405,913 - EX31_RS19065 0.73 +0.4 405,913 - EX31_RS19065 0.73 +0.8 405,913 - EX31_RS19065 0.73 -2.1 405,913 - EX31_RS19065 0.73 -0.5 405,913 - EX31_RS19065 0.73 -1.0 405,913 - EX31_RS19065 0.73 -1.0 405,928 + EX31_RS19065 0.74 +0.9 405,928 + EX31_RS19065 0.74 -0.2 405,929 - EX31_RS19065 0.74 -1.1 405,929 - EX31_RS19065 0.74 -0.2 405,929 - EX31_RS19065 0.74 -1.5 405,929 - EX31_RS19065 0.74 +0.4 406,002 + EX31_RS19065 0.79 -2.3 406,048 - EX31_RS19065 0.81 -0.2 406,048 - EX31_RS19065 0.81 +0.7 406,103 + EX31_RS19065 0.85 +0.4 406,104 - EX31_RS19065 0.85 -0.6 406,104 - EX31_RS19065 0.85 -0.1 406,104 - EX31_RS19065 0.85 +1.1 406,104 - EX31_RS19065 0.85 -1.0 406,104 - EX31_RS19065 0.85 -2.5 406,104 - EX31_RS19065 0.85 -1.0 406,104 - EX31_RS19065 0.85 -1.0 406,104 - EX31_RS19065 0.85 -2.9 406,104 - EX31_RS19065 0.85 +0.6 406,104 - EX31_RS19065 0.85 +1.2 406,104 - EX31_RS19065 0.85 -0.2 406,104 - EX31_RS19065 0.85 +0.2 406,104 - EX31_RS19065 0.85 +0.8 406,110 + EX31_RS19065 0.85 -1.6 406,110 + EX31_RS19065 0.85 -0.3 406,110 + EX31_RS19065 0.85 -0.0 406,111 - EX31_RS19065 0.85 +0.7 406,111 - EX31_RS19065 0.85 -1.4 406,178 + EX31_RS19065 0.89 +0.1 406,179 - EX31_RS19065 0.89 +0.3 406,182 + EX31_RS19065 0.89 -2.2 406,237 + -1.8 406,237 + +1.0 406,237 + -0.6 406,237 + -1.0 406,238 - -0.6 406,238 - -0.4 406,238 - +1.0 406,238 - -2.6 406,238 - +1.1 406,238 - +0.3 406,345 + +1.7 406,346 - +0.7 406,346 - -0.8 406,346 - -0.3 406,346 - +2.8 406,383 - +0.7 406,383 - -0.6 406,450 - +0.4 406,493 - EX31_RS19070 0.12 +0.3 406,497 + EX31_RS19070 0.12 -0.6 406,497 + EX31_RS19070 0.12 +1.0 406,497 + EX31_RS19070 0.12 +2.4 406,497 + EX31_RS19070 0.12 +2.0 406,498 - EX31_RS19070 0.12 -1.0 406,498 - EX31_RS19070 0.12 +0.8 406,498 - EX31_RS19070 0.12 +0.2 406,498 - EX31_RS19070 0.12 -0.2 406,498 - EX31_RS19070 0.12 -0.6 406,498 - EX31_RS19070 0.12 -0.8 406,498 - EX31_RS19070 0.12 -2.5 406,498 - EX31_RS19070 0.12 -0.4 406,498 - EX31_RS19070 0.12 -0.2 406,498 - EX31_RS19070 0.12 +0.1 406,529 + EX31_RS19070 0.16 +1.6 406,530 - EX31_RS19070 0.16 +0.8 406,530 - EX31_RS19070 0.16 +0.8 406,530 - EX31_RS19070 0.16 +0.7 406,530 - EX31_RS19070 0.16 -0.6 406,699 + EX31_RS19070 0.34 +1.0 406,700 - EX31_RS19070 0.34 +0.1 406,759 - EX31_RS19070 0.40 +0.1 407,043 + EX31_RS19070 0.71 -0.0 407,099 - EX31_RS19070 0.77 +0.7 407,188 - EX31_RS19070 0.86 +0.4 407,188 - EX31_RS19070 0.86 -0.4 407,197 - EX31_RS19070 0.87 +0.7 407,225 - +1.1 407,276 + -1.0 407,293 - +1.2 407,293 - +0.6 407,293 - -1.8 407,293 - +0.2 407,293 - -1.8 407,293 - +1.6 407,293 - +0.9 407,293 - +0.4 407,293 - +1.0 407,296 - +1.2 407,362 - +0.5 407,362 - +0.8
Or see this region's nucleotide sequence