Strain Fitness in Rahnella sp. WP5 around EX31_RS18890

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18880 and EX31_RS18885 overlap by 8 nucleotidesEX31_RS18885 and EX31_RS18890 are separated by 81 nucleotidesEX31_RS18890 and EX31_RS18895 are separated by 399 nucleotides EX31_RS18880: EX31_RS18880 - thioredoxin reductase, at 362,788 to 363,429 _RS18880 EX31_RS18885: EX31_RS18885 - molybdopterin-dependent oxidoreductase, at 363,422 to 364,186 _RS18885 EX31_RS18890: EX31_RS18890 - outer membrane protein OmpX, at 364,268 to 364,801 _RS18890 EX31_RS18895: EX31_RS18895 - threonine/homoserine exporter RhtA, at 365,201 to 366,187 _RS18895 Position (kb) 364 365Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 363.290 kb on - strand, within EX31_RS18880at 363.333 kb on + strand, within EX31_RS18880at 363.341 kb on + strand, within EX31_RS18880at 363.342 kb on - strand, within EX31_RS18880at 363.487 kb on + strandat 363.505 kb on - strand, within EX31_RS18885at 363.554 kb on - strand, within EX31_RS18885at 363.701 kb on + strand, within EX31_RS18885at 363.714 kb on - strand, within EX31_RS18885at 363.744 kb on - strand, within EX31_RS18885at 363.840 kb on + strand, within EX31_RS18885at 363.932 kb on + strand, within EX31_RS18885at 363.932 kb on + strand, within EX31_RS18885at 363.932 kb on + strand, within EX31_RS18885at 363.932 kb on + strand, within EX31_RS18885at 363.933 kb on - strand, within EX31_RS18885at 363.933 kb on - strand, within EX31_RS18885at 363.933 kb on - strand, within EX31_RS18885at 363.933 kb on - strand, within EX31_RS18885at 363.959 kb on + strand, within EX31_RS18885at 363.963 kb on - strand, within EX31_RS18885at 363.963 kb on - strand, within EX31_RS18885at 363.971 kb on - strand, within EX31_RS18885at 364.091 kb on - strand, within EX31_RS18885at 364.163 kb on + strandat 364.163 kb on + strandat 364.163 kb on + strandat 364.164 kb on - strandat 364.164 kb on - strandat 364.165 kb on + strandat 364.165 kb on + strandat 364.165 kb on + strandat 364.165 kb on + strandat 364.165 kb on + strandat 364.165 kb on + strandat 364.166 kb on - strandat 364.166 kb on - strandat 364.194 kb on - strandat 364.252 kb on - strandat 364.270 kb on - strandat 364.270 kb on - strandat 364.270 kb on - strandat 364.336 kb on - strand, within EX31_RS18890at 364.336 kb on - strand, within EX31_RS18890at 364.336 kb on - strand, within EX31_RS18890at 364.402 kb on - strand, within EX31_RS18890at 364.402 kb on - strand, within EX31_RS18890at 364.430 kb on - strand, within EX31_RS18890at 364.436 kb on - strand, within EX31_RS18890at 364.436 kb on - strand, within EX31_RS18890at 364.436 kb on - strand, within EX31_RS18890at 364.456 kb on - strand, within EX31_RS18890at 364.471 kb on - strand, within EX31_RS18890at 364.492 kb on - strand, within EX31_RS18890at 364.492 kb on - strand, within EX31_RS18890at 364.492 kb on - strand, within EX31_RS18890at 364.492 kb on - strand, within EX31_RS18890at 364.492 kb on - strand, within EX31_RS18890at 364.492 kb on - strand, within EX31_RS18890at 364.543 kb on - strand, within EX31_RS18890at 364.543 kb on - strand, within EX31_RS18890at 364.545 kb on + strand, within EX31_RS18890at 364.546 kb on - strand, within EX31_RS18890at 364.546 kb on - strand, within EX31_RS18890at 364.546 kb on - strand, within EX31_RS18890at 364.546 kb on - strand, within EX31_RS18890at 364.546 kb on - strand, within EX31_RS18890at 364.597 kb on - strand, within EX31_RS18890at 364.597 kb on - strand, within EX31_RS18890at 364.597 kb on - strand, within EX31_RS18890at 364.597 kb on - strand, within EX31_RS18890at 364.631 kb on - strand, within EX31_RS18890at 364.631 kb on - strand, within EX31_RS18890at 364.631 kb on - strand, within EX31_RS18890at 364.631 kb on - strand, within EX31_RS18890at 364.631 kb on - strand, within EX31_RS18890at 364.631 kb on - strand, within EX31_RS18890at 364.632 kb on - strand, within EX31_RS18890at 364.653 kb on - strand, within EX31_RS18890at 364.653 kb on - strand, within EX31_RS18890at 364.716 kb on - strand, within EX31_RS18890at 364.764 kb on - strandat 364.764 kb on - strandat 364.773 kb on - strandat 364.773 kb on - strandat 364.773 kb on - strandat 364.773 kb on - strandat 364.802 kb on - strandat 364.830 kb on - strandat 364.848 kb on + strandat 364.849 kb on - strandat 364.849 kb on - strandat 364.882 kb on + strandat 364.883 kb on - strandat 364.883 kb on - strandat 364.970 kb on + strandat 365.117 kb on - strandat 365.133 kb on - strandat 365.152 kb on + strandat 365.152 kb on + strandat 365.153 kb on - strandat 365.263 kb on + strandat 365.263 kb on + strandat 365.263 kb on + strandat 365.263 kb on + strandat 365.263 kb on + strandat 365.263 kb on + strandat 365.263 kb on + strandat 365.263 kb on + strandat 365.263 kb on + strandat 365.263 kb on + strandat 365.263 kb on + strandat 365.264 kb on - strandat 365.264 kb on - strandat 365.264 kb on - strandat 365.264 kb on - strandat 365.264 kb on - strandat 365.264 kb on - strandat 365.264 kb on - strandat 365.328 kb on + strand, within EX31_RS18895at 365.328 kb on + strand, within EX31_RS18895at 365.328 kb on + strand, within EX31_RS18895at 365.328 kb on + strand, within EX31_RS18895at 365.328 kb on + strand, within EX31_RS18895at 365.328 kb on + strand, within EX31_RS18895at 365.328 kb on + strand, within EX31_RS18895at 365.328 kb on + strand, within EX31_RS18895at 365.349 kb on + strand, within EX31_RS18895at 365.349 kb on + strand, within EX31_RS18895at 365.350 kb on - strand, within EX31_RS18895at 365.350 kb on - strand, within EX31_RS18895at 365.350 kb on - strand, within EX31_RS18895at 365.350 kb on - strand, within EX31_RS18895at 365.450 kb on + strand, within EX31_RS18895at 365.451 kb on - strand, within EX31_RS18895at 365.507 kb on + strand, within EX31_RS18895at 365.507 kb on + strand, within EX31_RS18895at 365.507 kb on + strand, within EX31_RS18895at 365.507 kb on + strand, within EX31_RS18895at 365.507 kb on + strand, within EX31_RS18895at 365.507 kb on + strand, within EX31_RS18895at 365.507 kb on + strand, within EX31_RS18895at 365.507 kb on + strand, within EX31_RS18895at 365.507 kb on + strand, within EX31_RS18895at 365.507 kb on + strand, within EX31_RS18895at 365.508 kb on - strand, within EX31_RS18895at 365.508 kb on - strand, within EX31_RS18895at 365.508 kb on - strand, within EX31_RS18895at 365.508 kb on - strand, within EX31_RS18895at 365.534 kb on + strand, within EX31_RS18895at 365.534 kb on + strand, within EX31_RS18895at 365.534 kb on + strand, within EX31_RS18895at 365.534 kb on + strand, within EX31_RS18895at 365.534 kb on + strand, within EX31_RS18895at 365.534 kb on + strand, within EX31_RS18895at 365.534 kb on + strand, within EX31_RS18895at 365.535 kb on - strand, within EX31_RS18895at 365.543 kb on + strand, within EX31_RS18895at 365.544 kb on - strand, within EX31_RS18895at 365.765 kb on + strand, within EX31_RS18895at 365.765 kb on + strand, within EX31_RS18895at 365.765 kb on + strand, within EX31_RS18895at 365.765 kb on + strand, within EX31_RS18895at 365.765 kb on + strand, within EX31_RS18895at 365.766 kb on - strand, within EX31_RS18895at 365.766 kb on - strand, within EX31_RS18895

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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363,290 - EX31_RS18880 0.78 -2.8
363,333 + EX31_RS18880 0.85 -0.6
363,341 + EX31_RS18880 0.86 +0.9
363,342 - EX31_RS18880 0.86 -0.3
363,487 + +0.1
363,505 - EX31_RS18885 0.11 +0.9
363,554 - EX31_RS18885 0.17 +1.5
363,701 + EX31_RS18885 0.36 -1.1
363,714 - EX31_RS18885 0.38 +0.4
363,744 - EX31_RS18885 0.42 -0.1
363,840 + EX31_RS18885 0.55 +0.9
363,932 + EX31_RS18885 0.67 -2.4
363,932 + EX31_RS18885 0.67 -1.6
363,932 + EX31_RS18885 0.67 -2.2
363,932 + EX31_RS18885 0.67 -0.6
363,933 - EX31_RS18885 0.67 +1.2
363,933 - EX31_RS18885 0.67 -0.8
363,933 - EX31_RS18885 0.67 +1.4
363,933 - EX31_RS18885 0.67 -1.9
363,959 + EX31_RS18885 0.70 +3.9
363,963 - EX31_RS18885 0.71 +0.5
363,963 - EX31_RS18885 0.71 -0.2
363,971 - EX31_RS18885 0.72 -1.9
364,091 - EX31_RS18885 0.87 -1.6
364,163 + -1.9
364,163 + +0.2
364,163 + +1.9
364,164 - +0.6
364,164 - +0.4
364,165 + -1.2
364,165 + +0.4
364,165 + -0.1
364,165 + +0.4
364,165 + -0.6
364,165 + -2.1
364,166 - -1.5
364,166 - -0.5
364,194 - -0.6
364,252 - -0.1
364,270 - -0.1
364,270 - -0.1
364,270 - +0.4
364,336 - EX31_RS18890 0.13 +1.8
364,336 - EX31_RS18890 0.13 +0.9
364,336 - EX31_RS18890 0.13 -1.1
364,402 - EX31_RS18890 0.25 -1.1
364,402 - EX31_RS18890 0.25 +1.9
364,430 - EX31_RS18890 0.30 -0.2
364,436 - EX31_RS18890 0.31 -1.2
364,436 - EX31_RS18890 0.31 -0.1
364,436 - EX31_RS18890 0.31 +0.4
364,456 - EX31_RS18890 0.35 -2.5
364,471 - EX31_RS18890 0.38 -0.5
364,492 - EX31_RS18890 0.42 -3.0
364,492 - EX31_RS18890 0.42 +2.3
364,492 - EX31_RS18890 0.42 -0.5
364,492 - EX31_RS18890 0.42 -0.4
364,492 - EX31_RS18890 0.42 -0.3
364,492 - EX31_RS18890 0.42 -0.1
364,543 - EX31_RS18890 0.51 -0.2
364,543 - EX31_RS18890 0.51 -0.5
364,545 + EX31_RS18890 0.52 +1.5
364,546 - EX31_RS18890 0.52 -0.1
364,546 - EX31_RS18890 0.52 +0.1
364,546 - EX31_RS18890 0.52 +0.4
364,546 - EX31_RS18890 0.52 +0.8
364,546 - EX31_RS18890 0.52 -0.8
364,597 - EX31_RS18890 0.62 -0.4
364,597 - EX31_RS18890 0.62 +0.2
364,597 - EX31_RS18890 0.62 +0.4
364,597 - EX31_RS18890 0.62 -0.6
364,631 - EX31_RS18890 0.68 -1.8
364,631 - EX31_RS18890 0.68 -1.6
364,631 - EX31_RS18890 0.68 -0.7
364,631 - EX31_RS18890 0.68 -1.4
364,631 - EX31_RS18890 0.68 -0.4
364,631 - EX31_RS18890 0.68 -0.1
364,632 - EX31_RS18890 0.68 -0.2
364,653 - EX31_RS18890 0.72 -0.6
364,653 - EX31_RS18890 0.72 -0.2
364,716 - EX31_RS18890 0.84 -2.1
364,764 - +0.2
364,764 - -1.4
364,773 - -0.7
364,773 - -0.9
364,773 - -0.8
364,773 - -1.5
364,802 - -0.6
364,830 - +0.5
364,848 + -0.5
364,849 - -0.1
364,849 - +0.9
364,882 + -2.6
364,883 - +0.1
364,883 - -2.5
364,970 + -2.5
365,117 - -1.6
365,133 - -1.1
365,152 + +0.6
365,152 + +0.7
365,153 - -0.3
365,263 + -0.6
365,263 + -0.6
365,263 + +0.5
365,263 + +1.5
365,263 + +1.2
365,263 + -1.9
365,263 + -3.4
365,263 + -0.2
365,263 + +0.5
365,263 + -1.2
365,263 + -1.1
365,264 - -1.1
365,264 - +1.7
365,264 - +1.2
365,264 - -0.6
365,264 - +0.2
365,264 - +0.6
365,264 - -1.1
365,328 + EX31_RS18895 0.13 +0.7
365,328 + EX31_RS18895 0.13 -3.1
365,328 + EX31_RS18895 0.13 -1.1
365,328 + EX31_RS18895 0.13 -0.2
365,328 + EX31_RS18895 0.13 +0.1
365,328 + EX31_RS18895 0.13 +0.9
365,328 + EX31_RS18895 0.13 -0.4
365,328 + EX31_RS18895 0.13 -2.1
365,349 + EX31_RS18895 0.15 -0.1
365,349 + EX31_RS18895 0.15 -0.2
365,350 - EX31_RS18895 0.15 -1.4
365,350 - EX31_RS18895 0.15 -0.5
365,350 - EX31_RS18895 0.15 -0.6
365,350 - EX31_RS18895 0.15 +0.9
365,450 + EX31_RS18895 0.25 -0.9
365,451 - EX31_RS18895 0.25 -0.9
365,507 + EX31_RS18895 0.31 +1.0
365,507 + EX31_RS18895 0.31 -3.5
365,507 + EX31_RS18895 0.31 +0.6
365,507 + EX31_RS18895 0.31 +0.7
365,507 + EX31_RS18895 0.31 +0.1
365,507 + EX31_RS18895 0.31 +0.9
365,507 + EX31_RS18895 0.31 +0.4
365,507 + EX31_RS18895 0.31 -0.3
365,507 + EX31_RS18895 0.31 +0.6
365,507 + EX31_RS18895 0.31 +0.5
365,508 - EX31_RS18895 0.31 -2.0
365,508 - EX31_RS18895 0.31 -1.1
365,508 - EX31_RS18895 0.31 -0.3
365,508 - EX31_RS18895 0.31 +0.9
365,534 + EX31_RS18895 0.34 +1.7
365,534 + EX31_RS18895 0.34 -0.1
365,534 + EX31_RS18895 0.34 +0.1
365,534 + EX31_RS18895 0.34 +0.6
365,534 + EX31_RS18895 0.34 +0.3
365,534 + EX31_RS18895 0.34 +0.7
365,534 + EX31_RS18895 0.34 -2.1
365,535 - EX31_RS18895 0.34 -2.1
365,543 + EX31_RS18895 0.35 +1.6
365,544 - EX31_RS18895 0.35 -0.3
365,765 + EX31_RS18895 0.57 -0.6
365,765 + EX31_RS18895 0.57 -2.4
365,765 + EX31_RS18895 0.57 +1.6
365,765 + EX31_RS18895 0.57 -3.0
365,765 + EX31_RS18895 0.57 +1.2
365,766 - EX31_RS18895 0.57 +1.9
365,766 - EX31_RS18895 0.57 -0.8

Or see this region's nucleotide sequence