Strain Fitness in Rahnella sp. WP5 around EX31_RS18785

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18780 and EX31_RS18785 are separated by 350 nucleotidesEX31_RS18785 and EX31_RS18790 overlap by 4 nucleotidesEX31_RS18790 and EX31_RS18795 are separated by 27 nucleotidesEX31_RS18795 and EX31_RS18800 are separated by 3 nucleotides EX31_RS18780: EX31_RS18780 - nucleoside-specific channel-forming protein Tsx, at 341,610 to 342,497 _RS18780 EX31_RS18785: EX31_RS18785 - DUF2384 domain-containing protein, at 342,848 to 343,309 _RS18785 EX31_RS18790: EX31_RS18790 - RES domain-containing protein, at 343,306 to 343,764 _RS18790 EX31_RS18795: EX31_RS18795 - DMT family transporter, at 343,792 to 344,244 _RS18795 EX31_RS18800: EX31_RS18800 - DMT family transporter, at 344,248 to 344,682 _RS18800 Position (kb) 342 343 344Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 341.880 kb on - strand, within EX31_RS18780at 341.881 kb on + strand, within EX31_RS18780at 341.882 kb on - strand, within EX31_RS18780at 341.882 kb on - strand, within EX31_RS18780at 341.882 kb on - strand, within EX31_RS18780at 341.882 kb on - strand, within EX31_RS18780at 341.924 kb on - strand, within EX31_RS18780at 341.974 kb on + strand, within EX31_RS18780at 341.975 kb on - strand, within EX31_RS18780at 341.989 kb on + strand, within EX31_RS18780at 341.990 kb on - strand, within EX31_RS18780at 341.990 kb on - strand, within EX31_RS18780at 341.990 kb on - strand, within EX31_RS18780at 341.998 kb on + strand, within EX31_RS18780at 341.999 kb on - strand, within EX31_RS18780at 341.999 kb on - strand, within EX31_RS18780at 341.999 kb on - strand, within EX31_RS18780at 341.999 kb on - strand, within EX31_RS18780at 342.058 kb on + strand, within EX31_RS18780at 342.058 kb on + strand, within EX31_RS18780at 342.059 kb on - strand, within EX31_RS18780at 342.059 kb on - strand, within EX31_RS18780at 342.059 kb on - strand, within EX31_RS18780at 342.059 kb on - strand, within EX31_RS18780at 342.059 kb on - strand, within EX31_RS18780at 342.066 kb on - strand, within EX31_RS18780at 342.066 kb on - strand, within EX31_RS18780at 342.101 kb on - strand, within EX31_RS18780at 342.104 kb on + strand, within EX31_RS18780at 342.104 kb on + strand, within EX31_RS18780at 342.105 kb on - strand, within EX31_RS18780at 342.105 kb on - strand, within EX31_RS18780at 342.105 kb on - strand, within EX31_RS18780at 342.106 kb on + strand, within EX31_RS18780at 342.106 kb on + strand, within EX31_RS18780at 342.106 kb on + strand, within EX31_RS18780at 342.106 kb on + strand, within EX31_RS18780at 342.106 kb on + strand, within EX31_RS18780at 342.106 kb on + strand, within EX31_RS18780at 342.106 kb on + strand, within EX31_RS18780at 342.106 kb on + strand, within EX31_RS18780at 342.106 kb on + strand, within EX31_RS18780at 342.106 kb on + strand, within EX31_RS18780at 342.106 kb on + strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.107 kb on - strand, within EX31_RS18780at 342.121 kb on + strand, within EX31_RS18780at 342.167 kb on + strand, within EX31_RS18780at 342.167 kb on + strand, within EX31_RS18780at 342.174 kb on - strand, within EX31_RS18780at 342.174 kb on - strand, within EX31_RS18780at 342.263 kb on + strand, within EX31_RS18780at 342.264 kb on - strand, within EX31_RS18780at 342.270 kb on - strand, within EX31_RS18780at 342.276 kb on - strand, within EX31_RS18780at 342.276 kb on - strand, within EX31_RS18780at 342.276 kb on - strand, within EX31_RS18780at 342.278 kb on - strand, within EX31_RS18780at 342.278 kb on - strand, within EX31_RS18780at 342.278 kb on - strand, within EX31_RS18780at 342.278 kb on - strand, within EX31_RS18780at 342.320 kb on - strand, within EX31_RS18780at 342.329 kb on - strand, within EX31_RS18780at 342.375 kb on + strand, within EX31_RS18780at 342.375 kb on + strand, within EX31_RS18780at 342.376 kb on - strand, within EX31_RS18780at 342.376 kb on - strand, within EX31_RS18780at 342.376 kb on - strand, within EX31_RS18780at 342.376 kb on - strand, within EX31_RS18780at 342.376 kb on - strand, within EX31_RS18780at 342.376 kb on - strand, within EX31_RS18780at 342.376 kb on - strand, within EX31_RS18780at 342.425 kb on + strandat 342.426 kb on - strandat 342.426 kb on - strandat 342.426 kb on - strandat 342.451 kb on + strandat 342.452 kb on - strandat 342.552 kb on + strandat 342.552 kb on + strandat 342.552 kb on + strandat 342.553 kb on - strandat 342.564 kb on + strandat 342.596 kb on + strandat 342.597 kb on - strandat 342.597 kb on - strandat 342.597 kb on - strandat 342.617 kb on - strandat 342.623 kb on + strandat 342.624 kb on - strandat 342.630 kb on + strandat 342.649 kb on + strandat 342.649 kb on + strandat 342.654 kb on - strandat 342.654 kb on - strandat 342.654 kb on - strandat 342.654 kb on - strandat 342.656 kb on + strandat 342.657 kb on - strandat 342.657 kb on - strandat 342.660 kb on + strandat 342.700 kb on + strandat 342.700 kb on + strandat 342.729 kb on + strandat 342.729 kb on + strandat 342.730 kb on - strandat 342.730 kb on - strandat 342.747 kb on + strandat 342.748 kb on - strandat 342.748 kb on - strandat 342.748 kb on - strandat 342.783 kb on + strandat 342.783 kb on + strandat 342.811 kb on + strandat 342.952 kb on - strand, within EX31_RS18785at 342.982 kb on + strand, within EX31_RS18785at 342.983 kb on - strand, within EX31_RS18785at 342.983 kb on - strand, within EX31_RS18785at 342.985 kb on + strand, within EX31_RS18785at 342.985 kb on + strand, within EX31_RS18785at 342.985 kb on + strand, within EX31_RS18785at 342.986 kb on - strand, within EX31_RS18785at 342.986 kb on - strand, within EX31_RS18785at 342.997 kb on + strand, within EX31_RS18785at 342.998 kb on - strand, within EX31_RS18785at 343.000 kb on + strand, within EX31_RS18785at 343.029 kb on + strand, within EX31_RS18785at 343.061 kb on + strand, within EX31_RS18785at 343.061 kb on + strand, within EX31_RS18785at 343.061 kb on + strand, within EX31_RS18785at 343.062 kb on - strand, within EX31_RS18785at 343.062 kb on - strand, within EX31_RS18785at 343.062 kb on - strand, within EX31_RS18785at 343.062 kb on - strand, within EX31_RS18785at 343.062 kb on - strand, within EX31_RS18785at 343.062 kb on - strand, within EX31_RS18785at 343.062 kb on - strand, within EX31_RS18785at 343.092 kb on + strand, within EX31_RS18785at 343.092 kb on + strand, within EX31_RS18785at 343.321 kb on - strandat 343.376 kb on - strand, within EX31_RS18790at 343.414 kb on + strand, within EX31_RS18790at 343.414 kb on + strand, within EX31_RS18790at 343.414 kb on + strand, within EX31_RS18790at 343.490 kb on - strand, within EX31_RS18790at 343.491 kb on + strand, within EX31_RS18790at 343.491 kb on + strand, within EX31_RS18790at 343.491 kb on + strand, within EX31_RS18790at 343.492 kb on - strand, within EX31_RS18790at 343.492 kb on - strand, within EX31_RS18790at 343.627 kb on + strand, within EX31_RS18790at 343.627 kb on + strand, within EX31_RS18790at 343.627 kb on + strand, within EX31_RS18790at 343.627 kb on + strand, within EX31_RS18790at 343.628 kb on - strand, within EX31_RS18790at 343.669 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.676 kb on + strand, within EX31_RS18790at 343.677 kb on - strand, within EX31_RS18790at 343.677 kb on - strand, within EX31_RS18790at 343.679 kb on + strand, within EX31_RS18790at 343.679 kb on + strand, within EX31_RS18790at 343.679 kb on + strand, within EX31_RS18790at 343.679 kb on + strand, within EX31_RS18790at 343.679 kb on + strand, within EX31_RS18790at 343.679 kb on + strand, within EX31_RS18790at 343.679 kb on + strand, within EX31_RS18790at 343.680 kb on - strand, within EX31_RS18790at 343.680 kb on - strand, within EX31_RS18790at 343.680 kb on - strand, within EX31_RS18790at 343.683 kb on + strand, within EX31_RS18790at 343.839 kb on + strand, within EX31_RS18795at 343.839 kb on + strand, within EX31_RS18795at 343.840 kb on - strand, within EX31_RS18795at 344.006 kb on + strand, within EX31_RS18795at 344.006 kb on + strand, within EX31_RS18795at 344.006 kb on + strand, within EX31_RS18795at 344.006 kb on + strand, within EX31_RS18795at 344.006 kb on + strand, within EX31_RS18795at 344.007 kb on - strand, within EX31_RS18795at 344.007 kb on - strand, within EX31_RS18795at 344.007 kb on - strand, within EX31_RS18795at 344.020 kb on + strand, within EX31_RS18795at 344.020 kb on + strand, within EX31_RS18795at 344.104 kb on - strand, within EX31_RS18795at 344.165 kb on - strand, within EX31_RS18795at 344.191 kb on - strand, within EX31_RS18795at 344.221 kb on + strandat 344.222 kb on - strandat 344.222 kb on - strandat 344.224 kb on + strandat 344.224 kb on + strandat 344.225 kb on - strandat 344.225 kb on - strandat 344.225 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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341,880 - EX31_RS18780 0.30 -0.1
341,881 + EX31_RS18780 0.31 -0.2
341,882 - EX31_RS18780 0.31 -0.4
341,882 - EX31_RS18780 0.31 -0.8
341,882 - EX31_RS18780 0.31 +0.7
341,882 - EX31_RS18780 0.31 +0.2
341,924 - EX31_RS18780 0.35 -1.4
341,974 + EX31_RS18780 0.41 +0.5
341,975 - EX31_RS18780 0.41 +1.9
341,989 + EX31_RS18780 0.43 +0.3
341,990 - EX31_RS18780 0.43 -3.1
341,990 - EX31_RS18780 0.43 -0.1
341,990 - EX31_RS18780 0.43 -1.0
341,998 + EX31_RS18780 0.44 +3.1
341,999 - EX31_RS18780 0.44 -0.3
341,999 - EX31_RS18780 0.44 -0.2
341,999 - EX31_RS18780 0.44 +0.9
341,999 - EX31_RS18780 0.44 -0.9
342,058 + EX31_RS18780 0.50 -1.1
342,058 + EX31_RS18780 0.50 +0.3
342,059 - EX31_RS18780 0.51 +0.3
342,059 - EX31_RS18780 0.51 +1.0
342,059 - EX31_RS18780 0.51 -1.2
342,059 - EX31_RS18780 0.51 -0.7
342,059 - EX31_RS18780 0.51 -3.0
342,066 - EX31_RS18780 0.51 -0.8
342,066 - EX31_RS18780 0.51 +0.7
342,101 - EX31_RS18780 0.55 -1.9
342,104 + EX31_RS18780 0.56 -1.1
342,104 + EX31_RS18780 0.56 +0.5
342,105 - EX31_RS18780 0.56 -1.4
342,105 - EX31_RS18780 0.56 -1.9
342,105 - EX31_RS18780 0.56 +1.4
342,106 + EX31_RS18780 0.56 -1.7
342,106 + EX31_RS18780 0.56 +1.3
342,106 + EX31_RS18780 0.56 +0.3
342,106 + EX31_RS18780 0.56 -0.7
342,106 + EX31_RS18780 0.56 -0.1
342,106 + EX31_RS18780 0.56 -1.1
342,106 + EX31_RS18780 0.56 +1.7
342,106 + EX31_RS18780 0.56 +0.3
342,106 + EX31_RS18780 0.56 -1.4
342,106 + EX31_RS18780 0.56 -2.1
342,106 + EX31_RS18780 0.56 -1.9
342,107 - EX31_RS18780 0.56 -0.6
342,107 - EX31_RS18780 0.56 +0.1
342,107 - EX31_RS18780 0.56 -0.8
342,107 - EX31_RS18780 0.56 -0.1
342,107 - EX31_RS18780 0.56 +0.6
342,107 - EX31_RS18780 0.56 +1.6
342,107 - EX31_RS18780 0.56 -1.4
342,107 - EX31_RS18780 0.56 +2.4
342,107 - EX31_RS18780 0.56 -0.1
342,107 - EX31_RS18780 0.56 -0.7
342,107 - EX31_RS18780 0.56 -0.7
342,107 - EX31_RS18780 0.56 +0.3
342,107 - EX31_RS18780 0.56 -0.7
342,107 - EX31_RS18780 0.56 -0.3
342,107 - EX31_RS18780 0.56 -1.3
342,107 - EX31_RS18780 0.56 +0.7
342,107 - EX31_RS18780 0.56 -1.9
342,107 - EX31_RS18780 0.56 -1.2
342,107 - EX31_RS18780 0.56 +0.7
342,107 - EX31_RS18780 0.56 -1.9
342,107 - EX31_RS18780 0.56 +0.6
342,107 - EX31_RS18780 0.56 +0.8
342,107 - EX31_RS18780 0.56 -0.3
342,107 - EX31_RS18780 0.56 -1.0
342,107 - EX31_RS18780 0.56 +0.3
342,121 + EX31_RS18780 0.58 +0.9
342,167 + EX31_RS18780 0.63 +0.9
342,167 + EX31_RS18780 0.63 +0.9
342,174 - EX31_RS18780 0.64 +0.3
342,174 - EX31_RS18780 0.64 -0.9
342,263 + EX31_RS18780 0.74 +1.3
342,264 - EX31_RS18780 0.74 +0.8
342,270 - EX31_RS18780 0.74 -0.7
342,276 - EX31_RS18780 0.75 -0.9
342,276 - EX31_RS18780 0.75 +0.1
342,276 - EX31_RS18780 0.75 +2.0
342,278 - EX31_RS18780 0.75 +2.3
342,278 - EX31_RS18780 0.75 +1.2
342,278 - EX31_RS18780 0.75 -1.8
342,278 - EX31_RS18780 0.75 +1.8
342,320 - EX31_RS18780 0.80 +0.9
342,329 - EX31_RS18780 0.81 -1.3
342,375 + EX31_RS18780 0.86 +2.9
342,375 + EX31_RS18780 0.86 +2.5
342,376 - EX31_RS18780 0.86 +0.7
342,376 - EX31_RS18780 0.86 -1.0
342,376 - EX31_RS18780 0.86 +1.6
342,376 - EX31_RS18780 0.86 -1.9
342,376 - EX31_RS18780 0.86 +0.0
342,376 - EX31_RS18780 0.86 +0.4
342,376 - EX31_RS18780 0.86 +0.9
342,425 + +1.9
342,426 - +0.3
342,426 - +0.0
342,426 - +0.7
342,451 + -0.7
342,452 - +0.2
342,552 + -2.5
342,552 + -0.7
342,552 + +1.5
342,553 - -0.6
342,564 + -2.2
342,596 + +0.0
342,597 - -0.1
342,597 - +0.7
342,597 - +0.2
342,617 - +1.0
342,623 + +1.8
342,624 - -0.3
342,630 + -0.4
342,649 + -3.7
342,649 + -0.1
342,654 - -1.7
342,654 - +0.5
342,654 - +1.5
342,654 - +0.8
342,656 + -0.1
342,657 - -0.4
342,657 - -0.7
342,660 + +0.3
342,700 + -1.7
342,700 + +0.7
342,729 + -0.7
342,729 + -1.1
342,730 - -1.9
342,730 - -1.1
342,747 + -0.2
342,748 - -1.1
342,748 - +0.2
342,748 - -2.1
342,783 + +1.7
342,783 + +2.5
342,811 + -0.0
342,952 - EX31_RS18785 0.23 +0.3
342,982 + EX31_RS18785 0.29 -1.1
342,983 - EX31_RS18785 0.29 +1.9
342,983 - EX31_RS18785 0.29 -0.4
342,985 + EX31_RS18785 0.30 -1.9
342,985 + EX31_RS18785 0.30 -2.2
342,985 + EX31_RS18785 0.30 -0.1
342,986 - EX31_RS18785 0.30 -1.9
342,986 - EX31_RS18785 0.30 -2.5
342,997 + EX31_RS18785 0.32 -1.1
342,998 - EX31_RS18785 0.32 -2.2
343,000 + EX31_RS18785 0.33 -2.2
343,029 + EX31_RS18785 0.39 -1.1
343,061 + EX31_RS18785 0.46 +0.3
343,061 + EX31_RS18785 0.46 -1.7
343,061 + EX31_RS18785 0.46 -3.3
343,062 - EX31_RS18785 0.46 -0.7
343,062 - EX31_RS18785 0.46 +0.2
343,062 - EX31_RS18785 0.46 +0.9
343,062 - EX31_RS18785 0.46 -1.7
343,062 - EX31_RS18785 0.46 +1.9
343,062 - EX31_RS18785 0.46 -1.7
343,062 - EX31_RS18785 0.46 -0.7
343,092 + EX31_RS18785 0.53 -1.4
343,092 + EX31_RS18785 0.53 -0.7
343,321 - -0.1
343,376 - EX31_RS18790 0.15 -1.9
343,414 + EX31_RS18790 0.24 +0.2
343,414 + EX31_RS18790 0.24 +0.4
343,414 + EX31_RS18790 0.24 -2.3
343,490 - EX31_RS18790 0.40 +1.7
343,491 + EX31_RS18790 0.40 +0.0
343,491 + EX31_RS18790 0.40 +1.4
343,491 + EX31_RS18790 0.40 +0.3
343,492 - EX31_RS18790 0.41 -2.2
343,492 - EX31_RS18790 0.41 -1.4
343,627 + EX31_RS18790 0.70 +0.3
343,627 + EX31_RS18790 0.70 +1.7
343,627 + EX31_RS18790 0.70 -1.7
343,627 + EX31_RS18790 0.70 +0.9
343,628 - EX31_RS18790 0.70 -0.9
343,669 + EX31_RS18790 0.79 -0.1
343,676 + EX31_RS18790 0.81 -0.2
343,676 + EX31_RS18790 0.81 -1.5
343,676 + EX31_RS18790 0.81 -1.9
343,676 + EX31_RS18790 0.81 -1.9
343,676 + EX31_RS18790 0.81 -1.5
343,676 + EX31_RS18790 0.81 +0.4
343,676 + EX31_RS18790 0.81 +0.4
343,676 + EX31_RS18790 0.81 -0.6
343,677 - EX31_RS18790 0.81 -1.1
343,677 - EX31_RS18790 0.81 -0.1
343,679 + EX31_RS18790 0.81 +0.6
343,679 + EX31_RS18790 0.81 -2.1
343,679 + EX31_RS18790 0.81 -0.7
343,679 + EX31_RS18790 0.81 +0.5
343,679 + EX31_RS18790 0.81 -2.5
343,679 + EX31_RS18790 0.81 +1.2
343,679 + EX31_RS18790 0.81 -0.8
343,680 - EX31_RS18790 0.81 -2.1
343,680 - EX31_RS18790 0.81 -2.5
343,680 - EX31_RS18790 0.81 -0.7
343,683 + EX31_RS18790 0.82 -0.9
343,839 + EX31_RS18795 0.10 +1.3
343,839 + EX31_RS18795 0.10 -2.4
343,840 - EX31_RS18795 0.11 -0.2
344,006 + EX31_RS18795 0.47 -1.4
344,006 + EX31_RS18795 0.47 -1.7
344,006 + EX31_RS18795 0.47 +0.4
344,006 + EX31_RS18795 0.47 +0.6
344,006 + EX31_RS18795 0.47 +1.5
344,007 - EX31_RS18795 0.47 -1.1
344,007 - EX31_RS18795 0.47 +0.3
344,007 - EX31_RS18795 0.47 -1.7
344,020 + EX31_RS18795 0.50 -1.1
344,020 + EX31_RS18795 0.50 -3.0
344,104 - EX31_RS18795 0.69 -0.1
344,165 - EX31_RS18795 0.82 +0.3
344,191 - EX31_RS18795 0.88 -0.7
344,221 + +1.9
344,222 - -1.9
344,222 - -0.9
344,224 + -1.4
344,224 + -0.1
344,225 - +0.9
344,225 - -3.0
344,225 - +1.5

Or see this region's nucleotide sequence