Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17415 and EX31_RS17420 are separated by 280 nucleotides EX31_RS17420 and EX31_RS17425 overlap by 8 nucleotides EX31_RS17425 and EX31_RS17430 are separated by 1 nucleotides
EX31_RS17415: EX31_RS17415 - autoinducer 2 ABC transporter substrate-binding protein, at 33,364 to 34,350
_RS17415
EX31_RS17420: EX31_RS17420 - sugar ABC transporter ATP-binding protein, at 34,631 to 36,169
_RS17420
EX31_RS17425: EX31_RS17425 - ABC transporter permease, at 36,162 to 37,151
_RS17425
EX31_RS17430: EX31_RS17430 - ABC transporter permease, at 37,153 to 38,106
_RS17430
Position (kb) 34
35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 33.770 kb on - strand, within EX31_RS17415 at 33.862 kb on - strand, within EX31_RS17415 at 33.885 kb on + strand, within EX31_RS17415 at 33.885 kb on + strand, within EX31_RS17415 at 33.890 kb on - strand, within EX31_RS17415 at 33.890 kb on - strand, within EX31_RS17415 at 33.957 kb on + strand, within EX31_RS17415 at 33.957 kb on + strand, within EX31_RS17415 at 33.957 kb on + strand, within EX31_RS17415 at 33.957 kb on + strand, within EX31_RS17415 at 33.958 kb on - strand, within EX31_RS17415 at 33.958 kb on - strand, within EX31_RS17415 at 34.126 kb on + strand, within EX31_RS17415 at 34.126 kb on + strand, within EX31_RS17415 at 34.147 kb on - strand, within EX31_RS17415 at 34.370 kb on + strand at 34.370 kb on + strand at 34.371 kb on - strand at 34.381 kb on + strand at 34.386 kb on - strand at 34.401 kb on - strand at 34.425 kb on + strand at 34.435 kb on + strand at 34.446 kb on - strand at 34.488 kb on + strand at 34.488 kb on + strand at 34.488 kb on + strand at 34.490 kb on + strand at 34.490 kb on + strand at 34.490 kb on + strand at 34.495 kb on + strand at 34.496 kb on - strand at 34.499 kb on + strand at 34.546 kb on + strand at 34.546 kb on + strand at 34.546 kb on + strand at 34.546 kb on + strand at 34.547 kb on - strand at 34.547 kb on - strand at 34.547 kb on - strand at 34.547 kb on - strand at 34.550 kb on + strand at 34.550 kb on + strand at 34.550 kb on + strand at 34.550 kb on + strand at 34.550 kb on + strand at 34.551 kb on - strand at 34.551 kb on - strand at 34.551 kb on - strand at 34.551 kb on - strand at 34.554 kb on + strand at 34.554 kb on + strand at 34.554 kb on + strand at 34.555 kb on - strand at 34.555 kb on - strand at 34.555 kb on - strand at 34.555 kb on - strand at 34.602 kb on + strand at 34.602 kb on + strand at 34.603 kb on - strand at 34.603 kb on - strand at 34.611 kb on + strand at 34.611 kb on + strand at 34.619 kb on - strand at 34.619 kb on - strand at 34.619 kb on - strand at 34.637 kb on - strand at 34.637 kb on - strand at 34.637 kb on - strand at 34.637 kb on - strand at 34.728 kb on + strand at 34.729 kb on - strand at 34.816 kb on + strand, within EX31_RS17420 at 34.817 kb on - strand, within EX31_RS17420 at 34.838 kb on + strand, within EX31_RS17420 at 34.838 kb on + strand, within EX31_RS17420 at 34.838 kb on + strand, within EX31_RS17420 at 34.839 kb on - strand, within EX31_RS17420 at 34.865 kb on - strand, within EX31_RS17420 at 34.881 kb on + strand, within EX31_RS17420 at 34.882 kb on - strand, within EX31_RS17420 at 34.914 kb on - strand, within EX31_RS17420 at 34.914 kb on - strand, within EX31_RS17420 at 34.930 kb on + strand, within EX31_RS17420 at 34.931 kb on - strand, within EX31_RS17420 at 34.944 kb on + strand, within EX31_RS17420 at 34.945 kb on - strand, within EX31_RS17420 at 34.978 kb on + strand, within EX31_RS17420 at 34.995 kb on - strand, within EX31_RS17420 at 35.019 kb on + strand, within EX31_RS17420 at 35.092 kb on + strand, within EX31_RS17420 at 35.137 kb on - strand, within EX31_RS17420 at 35.211 kb on + strand, within EX31_RS17420 at 35.320 kb on - strand, within EX31_RS17420 at 35.348 kb on + strand, within EX31_RS17420 at 35.407 kb on + strand, within EX31_RS17420 at 35.408 kb on - strand, within EX31_RS17420 at 35.411 kb on + strand, within EX31_RS17420 at 35.411 kb on + strand, within EX31_RS17420 at 35.412 kb on - strand, within EX31_RS17420 at 35.412 kb on - strand, within EX31_RS17420 at 35.489 kb on + strand, within EX31_RS17420 at 35.490 kb on - strand, within EX31_RS17420 at 35.490 kb on - strand, within EX31_RS17420 at 35.678 kb on + strand, within EX31_RS17420 at 35.678 kb on + strand, within EX31_RS17420 at 35.678 kb on + strand, within EX31_RS17420 at 35.678 kb on + strand, within EX31_RS17420 at 35.678 kb on + strand, within EX31_RS17420 at 35.678 kb on + strand, within EX31_RS17420 at 35.678 kb on + strand, within EX31_RS17420 at 35.678 kb on + strand, within EX31_RS17420 at 35.678 kb on + strand, within EX31_RS17420 at 35.678 kb on + strand, within EX31_RS17420 at 35.678 kb on + strand, within EX31_RS17420 at 35.678 kb on + strand, within EX31_RS17420 at 35.678 kb on + strand, within EX31_RS17420 at 35.678 kb on + strand, within EX31_RS17420 at 35.679 kb on - strand, within EX31_RS17420 at 35.679 kb on - strand, within EX31_RS17420 at 35.679 kb on - strand, within EX31_RS17420 at 35.679 kb on - strand, within EX31_RS17420 at 35.679 kb on - strand, within EX31_RS17420 at 35.679 kb on - strand, within EX31_RS17420 at 35.679 kb on - strand, within EX31_RS17420 at 35.679 kb on - strand, within EX31_RS17420 at 35.679 kb on - strand, within EX31_RS17420 at 35.839 kb on + strand, within EX31_RS17420 at 35.839 kb on + strand, within EX31_RS17420 at 35.840 kb on - strand, within EX31_RS17420 at 35.932 kb on + strand, within EX31_RS17420 at 35.933 kb on - strand, within EX31_RS17420 at 36.062 kb on + strand at 36.062 kb on + strand at 36.062 kb on + strand at 36.063 kb on - strand at 36.063 kb on - strand at 36.063 kb on - strand at 36.063 kb on - strand at 36.065 kb on + strand at 36.065 kb on + strand at 36.065 kb on + strand at 36.065 kb on + strand at 36.066 kb on - strand at 36.066 kb on - strand at 36.066 kb on - strand at 36.167 kb on + strand at 36.170 kb on + strand at 36.170 kb on + strand at 36.170 kb on + strand at 36.170 kb on + strand at 36.170 kb on + strand at 36.170 kb on + strand at 36.171 kb on - strand at 36.171 kb on - strand at 36.171 kb on - strand at 36.171 kb on - strand at 36.171 kb on - strand at 36.171 kb on - strand at 36.400 kb on - strand, within EX31_RS17425 at 36.400 kb on - strand, within EX31_RS17425 at 36.414 kb on + strand, within EX31_RS17425 at 36.414 kb on + strand, within EX31_RS17425 at 36.414 kb on + strand, within EX31_RS17425 at 36.414 kb on + strand, within EX31_RS17425 at 36.414 kb on + strand, within EX31_RS17425 at 36.415 kb on - strand, within EX31_RS17425 at 36.415 kb on - strand, within EX31_RS17425 at 36.415 kb on - strand, within EX31_RS17425 at 36.415 kb on - strand, within EX31_RS17425 at 36.479 kb on - strand, within EX31_RS17425 at 36.507 kb on + strand, within EX31_RS17425 at 36.508 kb on - strand, within EX31_RS17425 at 36.530 kb on + strand, within EX31_RS17425 at 36.530 kb on + strand, within EX31_RS17425 at 36.530 kb on + strand, within EX31_RS17425 at 36.531 kb on - strand, within EX31_RS17425 at 36.531 kb on - strand, within EX31_RS17425 at 36.533 kb on + strand, within EX31_RS17425 at 36.533 kb on + strand, within EX31_RS17425 at 36.533 kb on + strand, within EX31_RS17425 at 36.534 kb on - strand, within EX31_RS17425 at 36.562 kb on - strand, within EX31_RS17425 at 36.576 kb on + strand, within EX31_RS17425 at 36.576 kb on + strand, within EX31_RS17425 at 36.576 kb on + strand, within EX31_RS17425 at 36.576 kb on + strand, within EX31_RS17425 at 36.576 kb on + strand, within EX31_RS17425 at 36.577 kb on - strand, within EX31_RS17425 at 36.621 kb on - strand, within EX31_RS17425 at 36.632 kb on + strand, within EX31_RS17425 at 36.633 kb on - strand, within EX31_RS17425 at 36.633 kb on - strand, within EX31_RS17425 at 36.663 kb on + strand, within EX31_RS17425 at 36.669 kb on + strand, within EX31_RS17425 at 36.759 kb on + strand, within EX31_RS17425 at 36.839 kb on + strand, within EX31_RS17425 at 36.840 kb on - strand, within EX31_RS17425 at 36.884 kb on + strand, within EX31_RS17425 at 36.902 kb on + strand, within EX31_RS17425 at 36.902 kb on + strand, within EX31_RS17425 at 36.902 kb on + strand, within EX31_RS17425 at 36.902 kb on + strand, within EX31_RS17425 at 36.902 kb on + strand, within EX31_RS17425 at 36.903 kb on - strand, within EX31_RS17425 at 37.049 kb on + strand, within EX31_RS17425 at 37.163 kb on + strand at 37.164 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 33,770 - EX31_RS17415 0.41 -1.5 33,862 - EX31_RS17415 0.50 +1.2 33,885 + EX31_RS17415 0.53 +1.3 33,885 + EX31_RS17415 0.53 +1.1 33,890 - EX31_RS17415 0.53 +0.6 33,890 - EX31_RS17415 0.53 +2.8 33,957 + EX31_RS17415 0.60 -0.6 33,957 + EX31_RS17415 0.60 +1.2 33,957 + EX31_RS17415 0.60 -2.6 33,957 + EX31_RS17415 0.60 +0.6 33,958 - EX31_RS17415 0.60 -0.3 33,958 - EX31_RS17415 0.60 +0.3 34,126 + EX31_RS17415 0.77 -1.2 34,126 + EX31_RS17415 0.77 +0.2 34,147 - EX31_RS17415 0.79 -1.2 34,370 + +1.8 34,370 + -0.2 34,371 - -0.4 34,381 + +0.2 34,386 - +0.8 34,401 - +0.5 34,425 + -0.0 34,435 + -0.8 34,446 - +0.8 34,488 + +0.4 34,488 + +0.8 34,488 + -1.5 34,490 + -0.2 34,490 + +3.2 34,490 + -0.8 34,495 + -1.5 34,496 - +0.8 34,499 + +1.0 34,546 + -1.8 34,546 + -0.2 34,546 + +1.6 34,546 + -0.5 34,547 - +0.8 34,547 - -3.2 34,547 - +1.0 34,547 - -0.8 34,550 + +2.3 34,550 + +1.8 34,550 + -1.2 34,550 + +1.1 34,550 + -0.5 34,551 - +0.2 34,551 - -0.4 34,551 - +1.8 34,551 - -0.8 34,554 + -0.3 34,554 + -0.0 34,554 + -2.0 34,555 - +0.8 34,555 - +0.5 34,555 - +2.5 34,555 - +2.1 34,602 + -1.8 34,602 + +0.2 34,603 - +0.1 34,603 - -0.5 34,611 + +2.0 34,611 + +0.1 34,619 - +1.2 34,619 - +0.6 34,619 - +1.0 34,637 - -1.5 34,637 - +0.2 34,637 - -2.0 34,637 - -0.2 34,728 + -0.8 34,729 - +2.4 34,816 + EX31_RS17420 0.12 +0.8 34,817 - EX31_RS17420 0.12 +0.2 34,838 + EX31_RS17420 0.13 -1.6 34,838 + EX31_RS17420 0.13 +1.5 34,838 + EX31_RS17420 0.13 +0.5 34,839 - EX31_RS17420 0.14 -0.2 34,865 - EX31_RS17420 0.15 +1.2 34,881 + EX31_RS17420 0.16 +0.1 34,882 - EX31_RS17420 0.16 -2.2 34,914 - EX31_RS17420 0.18 -0.0 34,914 - EX31_RS17420 0.18 +1.4 34,930 + EX31_RS17420 0.19 -0.4 34,931 - EX31_RS17420 0.19 -0.5 34,944 + EX31_RS17420 0.20 -2.2 34,945 - EX31_RS17420 0.20 +0.4 34,978 + EX31_RS17420 0.23 +1.4 34,995 - EX31_RS17420 0.24 +0.8 35,019 + EX31_RS17420 0.25 +0.2 35,092 + EX31_RS17420 0.30 +0.8 35,137 - EX31_RS17420 0.33 +0.8 35,211 + EX31_RS17420 0.38 -1.5 35,320 - EX31_RS17420 0.45 +0.5 35,348 + EX31_RS17420 0.47 +0.7 35,407 + EX31_RS17420 0.50 +0.8 35,408 - EX31_RS17420 0.50 -0.6 35,411 + EX31_RS17420 0.51 -0.4 35,411 + EX31_RS17420 0.51 +0.3 35,412 - EX31_RS17420 0.51 +0.8 35,412 - EX31_RS17420 0.51 +1.4 35,489 + EX31_RS17420 0.56 +0.2 35,490 - EX31_RS17420 0.56 +0.7 35,490 - EX31_RS17420 0.56 +3.4 35,678 + EX31_RS17420 0.68 +0.5 35,678 + EX31_RS17420 0.68 -0.8 35,678 + EX31_RS17420 0.68 -0.1 35,678 + EX31_RS17420 0.68 -1.2 35,678 + EX31_RS17420 0.68 -1.2 35,678 + EX31_RS17420 0.68 -1.5 35,678 + EX31_RS17420 0.68 +2.2 35,678 + EX31_RS17420 0.68 +0.5 35,678 + EX31_RS17420 0.68 +0.5 35,678 + EX31_RS17420 0.68 +3.0 35,678 + EX31_RS17420 0.68 +0.2 35,678 + EX31_RS17420 0.68 +2.4 35,678 + EX31_RS17420 0.68 +0.8 35,678 + EX31_RS17420 0.68 -1.3 35,679 - EX31_RS17420 0.68 +0.9 35,679 - EX31_RS17420 0.68 +0.8 35,679 - EX31_RS17420 0.68 +1.1 35,679 - EX31_RS17420 0.68 -0.2 35,679 - EX31_RS17420 0.68 -0.2 35,679 - EX31_RS17420 0.68 -0.2 35,679 - EX31_RS17420 0.68 +0.5 35,679 - EX31_RS17420 0.68 -2.3 35,679 - EX31_RS17420 0.68 -0.8 35,839 + EX31_RS17420 0.78 +1.2 35,839 + EX31_RS17420 0.78 +0.8 35,840 - EX31_RS17420 0.79 +0.1 35,932 + EX31_RS17420 0.85 -1.8 35,933 - EX31_RS17420 0.85 +1.8 36,062 + +2.2 36,062 + +1.2 36,062 + +1.5 36,063 - -2.0 36,063 - -0.2 36,063 - +1.8 36,063 - +0.8 36,065 + -0.2 36,065 + +0.0 36,065 + -2.3 36,065 + -0.8 36,066 - +1.2 36,066 - +0.6 36,066 - +0.8 36,167 + +4.3 36,170 + -0.2 36,170 + -0.2 36,170 + +1.8 36,170 + -2.3 36,170 + +2.1 36,170 + +0.8 36,171 - +2.0 36,171 - -0.6 36,171 - -1.0 36,171 - +1.8 36,171 - +2.8 36,171 - +1.4 36,400 - EX31_RS17425 0.24 -0.3 36,400 - EX31_RS17425 0.24 -0.8 36,414 + EX31_RS17425 0.25 +0.1 36,414 + EX31_RS17425 0.25 -1.2 36,414 + EX31_RS17425 0.25 -0.5 36,414 + EX31_RS17425 0.25 +1.4 36,414 + EX31_RS17425 0.25 +0.2 36,415 - EX31_RS17425 0.26 -1.0 36,415 - EX31_RS17425 0.26 +1.7 36,415 - EX31_RS17425 0.26 -1.2 36,415 - EX31_RS17425 0.26 +0.5 36,479 - EX31_RS17425 0.32 -0.3 36,507 + EX31_RS17425 0.35 -2.3 36,508 - EX31_RS17425 0.35 +0.5 36,530 + EX31_RS17425 0.37 +0.1 36,530 + EX31_RS17425 0.37 +0.8 36,530 + EX31_RS17425 0.37 -0.2 36,531 - EX31_RS17425 0.37 +1.4 36,531 - EX31_RS17425 0.37 +0.8 36,533 + EX31_RS17425 0.37 +0.2 36,533 + EX31_RS17425 0.37 -0.4 36,533 + EX31_RS17425 0.37 -0.2 36,534 - EX31_RS17425 0.38 -0.8 36,562 - EX31_RS17425 0.40 +1.7 36,576 + EX31_RS17425 0.42 -1.2 36,576 + EX31_RS17425 0.42 -0.6 36,576 + EX31_RS17425 0.42 +0.3 36,576 + EX31_RS17425 0.42 +0.8 36,576 + EX31_RS17425 0.42 -1.5 36,577 - EX31_RS17425 0.42 +1.4 36,621 - EX31_RS17425 0.46 +1.2 36,632 + EX31_RS17425 0.47 +1.1 36,633 - EX31_RS17425 0.48 +0.8 36,633 - EX31_RS17425 0.48 +2.2 36,663 + EX31_RS17425 0.51 +0.2 36,669 + EX31_RS17425 0.51 -0.3 36,759 + EX31_RS17425 0.60 +0.8 36,839 + EX31_RS17425 0.68 +0.2 36,840 - EX31_RS17425 0.68 +0.3 36,884 + EX31_RS17425 0.73 -1.8 36,902 + EX31_RS17425 0.75 +2.8 36,902 + EX31_RS17425 0.75 -0.2 36,902 + EX31_RS17425 0.75 -0.2 36,902 + EX31_RS17425 0.75 -0.2 36,902 + EX31_RS17425 0.75 -1.2 36,903 - EX31_RS17425 0.75 -0.2 37,049 + EX31_RS17425 0.90 +1.2 37,163 + -0.2 37,164 - +1.1
Or see this region's nucleotide sequence