Strain Fitness in Rahnella sp. WP5 around EX31_RS15670

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS15665 and EX31_RS15670 overlap by 20 nucleotidesEX31_RS15670 and EX31_RS15675 are separated by 84 nucleotidesEX31_RS15675 and EX31_RS15680 overlap by 1 nucleotidesEX31_RS15680 and EX31_RS15685 are separated by 89 nucleotides EX31_RS15665: EX31_RS15665 - YcjX family protein, at 32,575 to 33,972 _RS15665 EX31_RS15670: EX31_RS15670 - phage-shock protein, at 33,953 to 34,198 _RS15670 EX31_RS15675: EX31_RS15675 - envelope stress response membrane protein PspC, at 34,283 to 34,642 _RS15675 EX31_RS15680: EX31_RS15680 - envelope stress response membrane protein PspB, at 34,642 to 34,869 _RS15680 EX31_RS15685: EX31_RS15685 - phage shock protein PspA, at 34,959 to 35,630 _RS15685 Position (kb) 33 34 35Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 32.983 kb on - strand, within EX31_RS15665at 33.025 kb on - strand, within EX31_RS15665at 33.075 kb on + strand, within EX31_RS15665at 33.076 kb on - strand, within EX31_RS15665at 33.157 kb on - strand, within EX31_RS15665at 33.157 kb on - strand, within EX31_RS15665at 33.159 kb on - strand, within EX31_RS15665at 33.159 kb on - strand, within EX31_RS15665at 33.185 kb on + strand, within EX31_RS15665at 33.186 kb on - strand, within EX31_RS15665at 33.186 kb on - strand, within EX31_RS15665at 33.189 kb on - strand, within EX31_RS15665at 33.229 kb on - strand, within EX31_RS15665at 33.229 kb on - strand, within EX31_RS15665at 33.230 kb on + strand, within EX31_RS15665at 33.310 kb on - strand, within EX31_RS15665at 33.377 kb on + strand, within EX31_RS15665at 33.386 kb on + strand, within EX31_RS15665at 33.387 kb on - strand, within EX31_RS15665at 33.387 kb on - strand, within EX31_RS15665at 33.528 kb on - strand, within EX31_RS15665at 33.590 kb on + strand, within EX31_RS15665at 33.591 kb on - strand, within EX31_RS15665at 33.592 kb on + strand, within EX31_RS15665at 33.592 kb on + strand, within EX31_RS15665at 33.592 kb on + strand, within EX31_RS15665at 33.592 kb on + strand, within EX31_RS15665at 33.592 kb on + strand, within EX31_RS15665at 33.592 kb on + strand, within EX31_RS15665at 33.593 kb on - strand, within EX31_RS15665at 33.593 kb on - strand, within EX31_RS15665at 33.593 kb on - strand, within EX31_RS15665at 33.593 kb on - strand, within EX31_RS15665at 33.731 kb on + strand, within EX31_RS15665at 33.732 kb on - strand, within EX31_RS15665at 33.842 kb on - strandat 34.013 kb on - strand, within EX31_RS15670at 34.013 kb on - strand, within EX31_RS15670at 34.013 kb on - strand, within EX31_RS15670at 34.034 kb on + strand, within EX31_RS15670at 34.034 kb on + strand, within EX31_RS15670at 34.035 kb on - strand, within EX31_RS15670at 34.035 kb on - strand, within EX31_RS15670at 34.038 kb on - strand, within EX31_RS15670at 34.038 kb on - strand, within EX31_RS15670at 34.043 kb on + strand, within EX31_RS15670at 34.044 kb on - strand, within EX31_RS15670at 34.051 kb on - strand, within EX31_RS15670at 34.051 kb on - strand, within EX31_RS15670at 34.051 kb on - strand, within EX31_RS15670at 34.127 kb on - strand, within EX31_RS15670at 34.198 kb on + strandat 34.284 kb on + strandat 34.285 kb on - strandat 34.285 kb on - strandat 34.332 kb on + strand, within EX31_RS15675at 34.333 kb on - strand, within EX31_RS15675at 34.333 kb on - strand, within EX31_RS15675at 34.333 kb on - strand, within EX31_RS15675at 34.333 kb on - strand, within EX31_RS15675at 34.333 kb on - strand, within EX31_RS15675at 34.429 kb on - strand, within EX31_RS15675at 34.429 kb on - strand, within EX31_RS15675at 34.429 kb on - strand, within EX31_RS15675at 34.429 kb on - strand, within EX31_RS15675at 34.429 kb on - strand, within EX31_RS15675at 34.429 kb on - strand, within EX31_RS15675at 34.458 kb on + strand, within EX31_RS15675at 34.471 kb on + strand, within EX31_RS15675at 34.472 kb on - strand, within EX31_RS15675at 34.473 kb on + strand, within EX31_RS15675at 34.473 kb on + strand, within EX31_RS15675at 34.473 kb on + strand, within EX31_RS15675at 34.473 kb on + strand, within EX31_RS15675at 34.473 kb on + strand, within EX31_RS15675at 34.473 kb on + strand, within EX31_RS15675at 34.474 kb on - strand, within EX31_RS15675at 34.474 kb on - strand, within EX31_RS15675at 34.474 kb on - strand, within EX31_RS15675at 34.474 kb on - strand, within EX31_RS15675at 34.586 kb on + strand, within EX31_RS15675at 34.587 kb on - strand, within EX31_RS15675at 34.644 kb on - strandat 34.644 kb on - strandat 34.644 kb on - strandat 34.698 kb on + strand, within EX31_RS15680at 34.699 kb on - strand, within EX31_RS15680at 34.699 kb on - strand, within EX31_RS15680at 34.711 kb on - strand, within EX31_RS15680at 34.711 kb on - strand, within EX31_RS15680at 34.711 kb on - strand, within EX31_RS15680at 34.711 kb on - strand, within EX31_RS15680at 34.762 kb on - strand, within EX31_RS15680at 34.793 kb on + strand, within EX31_RS15680at 34.825 kb on + strand, within EX31_RS15680at 34.826 kb on - strand, within EX31_RS15680at 34.826 kb on - strand, within EX31_RS15680at 34.826 kb on - strand, within EX31_RS15680at 34.880 kb on + strandat 34.881 kb on - strandat 34.881 kb on - strandat 34.881 kb on - strandat 34.890 kb on - strandat 34.890 kb on - strandat 34.890 kb on - strandat 34.890 kb on - strandat 34.890 kb on - strandat 34.893 kb on + strandat 34.894 kb on - strandat 34.960 kb on + strandat 34.961 kb on - strandat 34.961 kb on - strandat 34.961 kb on - strandat 35.100 kb on - strand, within EX31_RS15685

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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32,983 - EX31_RS15665 0.29 -0.2
33,025 - EX31_RS15665 0.32 +0.8
33,075 + EX31_RS15665 0.36 +0.6
33,076 - EX31_RS15665 0.36 -2.7
33,157 - EX31_RS15665 0.42 +0.6
33,157 - EX31_RS15665 0.42 -1.0
33,159 - EX31_RS15665 0.42 -0.4
33,159 - EX31_RS15665 0.42 -0.8
33,185 + EX31_RS15665 0.44 -1.0
33,186 - EX31_RS15665 0.44 -2.5
33,186 - EX31_RS15665 0.44 -0.4
33,189 - EX31_RS15665 0.44 +0.4
33,229 - EX31_RS15665 0.47 +0.6
33,229 - EX31_RS15665 0.47 -0.6
33,230 + EX31_RS15665 0.47 +2.2
33,310 - EX31_RS15665 0.53 -0.4
33,377 + EX31_RS15665 0.57 +0.3
33,386 + EX31_RS15665 0.58 +2.0
33,387 - EX31_RS15665 0.58 +1.1
33,387 - EX31_RS15665 0.58 -2.0
33,528 - EX31_RS15665 0.68 -0.7
33,590 + EX31_RS15665 0.73 +1.2
33,591 - EX31_RS15665 0.73 +1.0
33,592 + EX31_RS15665 0.73 +0.4
33,592 + EX31_RS15665 0.73 +0.3
33,592 + EX31_RS15665 0.73 -0.8
33,592 + EX31_RS15665 0.73 +1.5
33,592 + EX31_RS15665 0.73 -0.2
33,592 + EX31_RS15665 0.73 +0.6
33,593 - EX31_RS15665 0.73 -1.0
33,593 - EX31_RS15665 0.73 +1.6
33,593 - EX31_RS15665 0.73 -1.4
33,593 - EX31_RS15665 0.73 +1.0
33,731 + EX31_RS15665 0.83 -0.4
33,732 - EX31_RS15665 0.83 +0.6
33,842 - -0.4
34,013 - EX31_RS15670 0.24 +1.9
34,013 - EX31_RS15670 0.24 -2.4
34,013 - EX31_RS15670 0.24 -1.7
34,034 + EX31_RS15670 0.33 +0.6
34,034 + EX31_RS15670 0.33 +1.0
34,035 - EX31_RS15670 0.33 -3.5
34,035 - EX31_RS15670 0.33 +1.6
34,038 - EX31_RS15670 0.35 -3.4
34,038 - EX31_RS15670 0.35 -1.7
34,043 + EX31_RS15670 0.37 -1.5
34,044 - EX31_RS15670 0.37 -2.0
34,051 - EX31_RS15670 0.40 -1.7
34,051 - EX31_RS15670 0.40 -0.4
34,051 - EX31_RS15670 0.40 -1.1
34,127 - EX31_RS15670 0.71 +0.4
34,198 + +1.0
34,284 + +0.6
34,285 - -1.7
34,285 - +0.9
34,332 + EX31_RS15675 0.14 +0.6
34,333 - EX31_RS15675 0.14 -1.0
34,333 - EX31_RS15675 0.14 +1.0
34,333 - EX31_RS15675 0.14 +0.6
34,333 - EX31_RS15675 0.14 -0.2
34,333 - EX31_RS15675 0.14 -2.0
34,429 - EX31_RS15675 0.41 -2.0
34,429 - EX31_RS15675 0.41 -1.6
34,429 - EX31_RS15675 0.41 +0.6
34,429 - EX31_RS15675 0.41 +1.1
34,429 - EX31_RS15675 0.41 +1.2
34,429 - EX31_RS15675 0.41 -1.3
34,458 + EX31_RS15675 0.49 +1.4
34,471 + EX31_RS15675 0.52 -1.0
34,472 - EX31_RS15675 0.53 -1.0
34,473 + EX31_RS15675 0.53 -1.0
34,473 + EX31_RS15675 0.53 +0.6
34,473 + EX31_RS15675 0.53 -1.4
34,473 + EX31_RS15675 0.53 +0.0
34,473 + EX31_RS15675 0.53 +0.2
34,473 + EX31_RS15675 0.53 +0.3
34,474 - EX31_RS15675 0.53 +0.6
34,474 - EX31_RS15675 0.53 +0.6
34,474 - EX31_RS15675 0.53 -1.4
34,474 - EX31_RS15675 0.53 -0.6
34,586 + EX31_RS15675 0.84 -2.7
34,587 - EX31_RS15675 0.84 +1.5
34,644 - -0.0
34,644 - +0.4
34,644 - -0.2
34,698 + EX31_RS15680 0.25 +0.6
34,699 - EX31_RS15680 0.25 -0.5
34,699 - EX31_RS15680 0.25 +1.0
34,711 - EX31_RS15680 0.30 -0.0
34,711 - EX31_RS15680 0.30 +1.2
34,711 - EX31_RS15680 0.30 +2.0
34,711 - EX31_RS15680 0.30 +0.6
34,762 - EX31_RS15680 0.53 +3.0
34,793 + EX31_RS15680 0.66 -0.4
34,825 + EX31_RS15680 0.80 -0.4
34,826 - EX31_RS15680 0.81 -0.3
34,826 - EX31_RS15680 0.81 +0.6
34,826 - EX31_RS15680 0.81 -3.1
34,880 + -1.0
34,881 - +1.5
34,881 - +0.6
34,881 - +0.6
34,890 - +0.6
34,890 - -1.7
34,890 - +0.6
34,890 - -1.7
34,890 - -0.4
34,893 + +0.9
34,894 - -1.3
34,960 + +2.5
34,961 - +1.0
34,961 - -2.4
34,961 - -2.4
35,100 - EX31_RS15685 0.21 +0.1

Or see this region's nucleotide sequence