Strain Fitness in Rahnella sp. WP5 around EX31_RS14620

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS14615 and EX31_RS14620 overlap by 4 nucleotidesEX31_RS14620 and EX31_RS14625 are separated by 13 nucleotidesEX31_RS14625 and EX31_RS14630 are separated by 141 nucleotides EX31_RS14615: EX31_RS14615 - ubiquinone biosynthesis regulatory protein kinase UbiB, at 14,718 to 16,349 _RS14615 EX31_RS14620: EX31_RS14620 - SCP2 domain-containing protein, at 16,346 to 16,954 _RS14620 EX31_RS14625: EX31_RS14625 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE, at 16,968 to 17,723 _RS14625 EX31_RS14630: EX31_RS14630 - DNA recombination protein RmuC, at 17,865 to 19,406 _RS14630 Position (kb) 16 17Strain fitness (log2 ratio) -3 -2 -1 0 1at 16.373 kb on - strandat 16.489 kb on - strand, within EX31_RS14620at 16.489 kb on - strand, within EX31_RS14620at 16.579 kb on - strand, within EX31_RS14620at 16.665 kb on - strand, within EX31_RS14620at 16.713 kb on - strand, within EX31_RS14620at 16.718 kb on - strand, within EX31_RS14620at 16.718 kb on - strand, within EX31_RS14620at 16.906 kb on - strandat 16.910 kb on - strandat 16.961 kb on - strandat 16.961 kb on - strandat 16.961 kb on - strandat 16.967 kb on - strandat 17.767 kb on - strandat 17.767 kb on - strandat 17.811 kb on + strandat 17.811 kb on + strandat 17.811 kb on + strandat 17.812 kb on - strandat 17.812 kb on - strandat 17.842 kb on + strandat 17.842 kb on + strandat 17.842 kb on + strandat 17.842 kb on + strandat 17.842 kb on + strandat 17.842 kb on + strandat 17.843 kb on - strandat 17.843 kb on - strandat 17.867 kb on - strandat 17.867 kb on - strandat 17.886 kb on + strandat 17.886 kb on + strandat 17.887 kb on - strandat 17.930 kb on + strandat 17.931 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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16,373 - -1.1
16,489 - EX31_RS14620 0.23 -1.1
16,489 - EX31_RS14620 0.23 -0.1
16,579 - EX31_RS14620 0.38 +0.5
16,665 - EX31_RS14620 0.52 -0.5
16,713 - EX31_RS14620 0.60 -0.9
16,718 - EX31_RS14620 0.61 -0.4
16,718 - EX31_RS14620 0.61 -0.1
16,906 - -3.1
16,910 - -1.1
16,961 - -0.5
16,961 - +0.8
16,961 - -0.5
16,967 - -0.2
17,767 - +0.5
17,767 - -0.4
17,811 + -0.2
17,811 + -0.5
17,811 + -0.6
17,812 - +1.3
17,812 - -2.0
17,842 + +0.6
17,842 + -0.8
17,842 + -1.5
17,842 + -3.0
17,842 + +1.2
17,842 + +0.9
17,843 - -0.7
17,843 - -0.5
17,867 - -0.2
17,867 - +0.3
17,886 + -1.4
17,886 + -2.0
17,887 - -0.3
17,930 + -1.5
17,931 - +0.2

Or see this region's nucleotide sequence