Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10695 and EX31_RS10700 are separated by 101 nucleotides EX31_RS10700 and EX31_RS10705 are separated by 330 nucleotides EX31_RS10705 and EX31_RS10710 are separated by 49 nucleotides EX31_RS10710 and EX31_RS10715 overlap by 4 nucleotides EX31_RS10715 and EX31_RS10720 are separated by 216 nucleotides
EX31_RS10695: EX31_RS10695 - EthD family reductase, at 57,016 to 57,321
_RS10695
EX31_RS10700: EX31_RS10700 - hypothetical protein, at 57,423 to 57,749
_RS10700
EX31_RS10705: EX31_RS10705 - adhesin, at 58,080 to 59,216
_RS10705
EX31_RS10710: EX31_RS10710 - hypothetical protein, at 59,266 to 59,682
_RS10710
EX31_RS10715: EX31_RS10715 - hypothetical protein, at 59,679 to 59,903
_RS10715
EX31_RS10720: EX31_RS10720 - NAD(P)H:quinone oxidoreductase, at 60,120 to 60,809
_RS10720
Position (kb) 58
59
60 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 57.093 kb on - strand, within EX31_RS10695 at 57.133 kb on + strand, within EX31_RS10695 at 57.134 kb on - strand, within EX31_RS10695 at 57.144 kb on + strand, within EX31_RS10695 at 57.196 kb on - strand, within EX31_RS10695 at 57.199 kb on + strand, within EX31_RS10695 at 57.199 kb on + strand, within EX31_RS10695 at 57.199 kb on + strand, within EX31_RS10695 at 57.199 kb on + strand, within EX31_RS10695 at 57.199 kb on + strand, within EX31_RS10695 at 57.199 kb on + strand, within EX31_RS10695 at 57.200 kb on - strand, within EX31_RS10695 at 57.200 kb on - strand, within EX31_RS10695 at 57.200 kb on - strand, within EX31_RS10695 at 57.200 kb on - strand, within EX31_RS10695 at 57.200 kb on - strand, within EX31_RS10695 at 57.267 kb on - strand, within EX31_RS10695 at 57.358 kb on - strand at 57.403 kb on - strand at 57.404 kb on + strand at 57.405 kb on - strand at 57.405 kb on - strand at 57.425 kb on - strand at 57.436 kb on - strand at 57.573 kb on - strand, within EX31_RS10700 at 57.579 kb on - strand, within EX31_RS10700 at 57.579 kb on - strand, within EX31_RS10700 at 57.579 kb on - strand, within EX31_RS10700 at 57.647 kb on + strand, within EX31_RS10700 at 57.651 kb on + strand, within EX31_RS10700 at 57.895 kb on - strand at 57.913 kb on + strand at 57.914 kb on - strand at 58.148 kb on + strand at 58.223 kb on + strand, within EX31_RS10705 at 58.224 kb on - strand, within EX31_RS10705 at 58.240 kb on + strand, within EX31_RS10705 at 58.241 kb on - strand, within EX31_RS10705 at 58.287 kb on - strand, within EX31_RS10705 at 58.327 kb on + strand, within EX31_RS10705 at 58.328 kb on - strand, within EX31_RS10705 at 58.328 kb on - strand, within EX31_RS10705 at 58.328 kb on - strand, within EX31_RS10705 at 58.328 kb on - strand, within EX31_RS10705 at 58.328 kb on - strand, within EX31_RS10705 at 58.367 kb on - strand, within EX31_RS10705 at 58.374 kb on + strand, within EX31_RS10705 at 58.374 kb on + strand, within EX31_RS10705 at 58.375 kb on - strand, within EX31_RS10705 at 58.388 kb on + strand, within EX31_RS10705 at 58.388 kb on + strand, within EX31_RS10705 at 58.388 kb on + strand, within EX31_RS10705 at 58.388 kb on + strand, within EX31_RS10705 at 58.389 kb on - strand, within EX31_RS10705 at 58.389 kb on - strand, within EX31_RS10705 at 58.389 kb on - strand, within EX31_RS10705 at 58.392 kb on + strand, within EX31_RS10705 at 58.392 kb on + strand, within EX31_RS10705 at 58.392 kb on + strand, within EX31_RS10705 at 58.392 kb on + strand, within EX31_RS10705 at 58.393 kb on - strand, within EX31_RS10705 at 58.393 kb on - strand, within EX31_RS10705 at 58.393 kb on - strand, within EX31_RS10705 at 58.395 kb on + strand, within EX31_RS10705 at 58.395 kb on + strand, within EX31_RS10705 at 58.395 kb on + strand, within EX31_RS10705 at 58.396 kb on - strand, within EX31_RS10705 at 58.473 kb on - strand, within EX31_RS10705 at 58.511 kb on + strand, within EX31_RS10705 at 58.513 kb on + strand, within EX31_RS10705 at 58.514 kb on - strand, within EX31_RS10705 at 58.514 kb on - strand, within EX31_RS10705 at 58.514 kb on - strand, within EX31_RS10705 at 58.628 kb on + strand, within EX31_RS10705 at 58.650 kb on - strand, within EX31_RS10705 at 58.796 kb on + strand, within EX31_RS10705 at 58.796 kb on + strand, within EX31_RS10705 at 58.797 kb on - strand, within EX31_RS10705 at 58.797 kb on - strand, within EX31_RS10705 at 58.797 kb on - strand, within EX31_RS10705 at 58.797 kb on - strand, within EX31_RS10705 at 58.797 kb on - strand, within EX31_RS10705 at 58.797 kb on - strand, within EX31_RS10705 at 58.797 kb on - strand, within EX31_RS10705 at 58.798 kb on + strand, within EX31_RS10705 at 58.816 kb on - strand, within EX31_RS10705 at 58.816 kb on - strand, within EX31_RS10705 at 58.936 kb on - strand, within EX31_RS10705 at 58.936 kb on - strand, within EX31_RS10705 at 58.936 kb on - strand, within EX31_RS10705 at 59.177 kb on + strand at 59.178 kb on - strand at 59.178 kb on - strand at 59.214 kb on + strand at 59.215 kb on - strand at 59.317 kb on - strand, within EX31_RS10710 at 59.374 kb on + strand, within EX31_RS10710 at 59.374 kb on + strand, within EX31_RS10710 at 59.374 kb on + strand, within EX31_RS10710 at 59.374 kb on + strand, within EX31_RS10710 at 59.374 kb on + strand, within EX31_RS10710 at 59.374 kb on + strand, within EX31_RS10710 at 59.375 kb on - strand, within EX31_RS10710 at 59.375 kb on - strand, within EX31_RS10710 at 59.375 kb on - strand, within EX31_RS10710 at 59.375 kb on - strand, within EX31_RS10710 at 59.375 kb on - strand, within EX31_RS10710 at 59.375 kb on - strand, within EX31_RS10710 at 59.375 kb on - strand, within EX31_RS10710 at 59.377 kb on - strand, within EX31_RS10710 at 59.377 kb on - strand, within EX31_RS10710 at 59.377 kb on - strand, within EX31_RS10710 at 59.377 kb on - strand, within EX31_RS10710 at 59.452 kb on + strand, within EX31_RS10710 at 59.490 kb on + strand, within EX31_RS10710 at 59.496 kb on + strand, within EX31_RS10710 at 59.533 kb on + strand, within EX31_RS10710 at 59.533 kb on + strand, within EX31_RS10710 at 59.533 kb on + strand, within EX31_RS10710 at 59.534 kb on - strand, within EX31_RS10710 at 59.535 kb on + strand, within EX31_RS10710 at 59.536 kb on - strand, within EX31_RS10710 at 59.615 kb on - strand, within EX31_RS10710 at 59.615 kb on - strand, within EX31_RS10710 at 59.617 kb on + strand, within EX31_RS10710 at 59.617 kb on + strand, within EX31_RS10710 at 59.662 kb on + strand at 59.730 kb on + strand, within EX31_RS10715 at 59.730 kb on + strand, within EX31_RS10715 at 59.730 kb on + strand, within EX31_RS10715 at 59.731 kb on - strand, within EX31_RS10715 at 59.731 kb on - strand, within EX31_RS10715 at 59.731 kb on - strand, within EX31_RS10715 at 59.731 kb on - strand, within EX31_RS10715 at 59.731 kb on - strand, within EX31_RS10715 at 59.732 kb on + strand, within EX31_RS10715 at 59.732 kb on + strand, within EX31_RS10715 at 59.732 kb on + strand, within EX31_RS10715 at 59.732 kb on + strand, within EX31_RS10715 at 59.732 kb on + strand, within EX31_RS10715 at 59.732 kb on + strand, within EX31_RS10715 at 59.733 kb on - strand, within EX31_RS10715 at 59.733 kb on - strand, within EX31_RS10715 at 59.923 kb on + strand at 59.923 kb on + strand at 59.924 kb on - strand at 59.925 kb on + strand at 59.967 kb on + strand at 59.968 kb on - strand at 59.968 kb on - strand at 59.970 kb on + strand at 59.970 kb on + strand at 59.970 kb on + strand at 59.971 kb on - strand at 59.971 kb on - strand at 59.971 kb on - strand at 59.971 kb on - strand at 59.971 kb on - strand at 59.972 kb on + strand at 59.972 kb on + strand at 59.973 kb on - strand at 59.973 kb on - strand at 59.973 kb on - strand at 59.973 kb on - strand at 59.974 kb on + strand at 59.974 kb on + strand at 59.974 kb on + strand at 59.974 kb on + strand at 59.975 kb on - strand at 59.975 kb on - strand at 59.975 kb on - strand at 59.975 kb on - strand at 59.975 kb on - strand at 60.015 kb on + strand at 60.016 kb on - strand at 60.016 kb on - strand at 60.016 kb on - strand at 60.048 kb on + strand at 60.049 kb on - strand at 60.149 kb on + strand at 60.205 kb on + strand, within EX31_RS10720
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 57,093 - EX31_RS10695 0.25 -0.1 57,133 + EX31_RS10695 0.38 +1.6 57,134 - EX31_RS10695 0.39 -1.3 57,144 + EX31_RS10695 0.42 -1.7 57,196 - EX31_RS10695 0.59 -1.1 57,199 + EX31_RS10695 0.60 -0.7 57,199 + EX31_RS10695 0.60 -0.1 57,199 + EX31_RS10695 0.60 +0.9 57,199 + EX31_RS10695 0.60 +0.3 57,199 + EX31_RS10695 0.60 +0.9 57,199 + EX31_RS10695 0.60 +0.9 57,200 - EX31_RS10695 0.60 +0.2 57,200 - EX31_RS10695 0.60 +1.7 57,200 - EX31_RS10695 0.60 -0.6 57,200 - EX31_RS10695 0.60 +0.1 57,200 - EX31_RS10695 0.60 +1.4 57,267 - EX31_RS10695 0.82 -0.1 57,358 - -0.7 57,403 - -0.4 57,404 + +0.0 57,405 - +0.9 57,405 - +0.9 57,425 - -1.6 57,436 - +1.5 57,573 - EX31_RS10700 0.46 +0.9 57,579 - EX31_RS10700 0.48 +1.9 57,579 - EX31_RS10700 0.48 +1.4 57,579 - EX31_RS10700 0.48 +0.9 57,647 + EX31_RS10700 0.69 +0.9 57,651 + EX31_RS10700 0.70 +0.9 57,895 - +2.0 57,913 + +2.2 57,914 - +1.2 58,148 + +1.9 58,223 + EX31_RS10705 0.13 -1.9 58,224 - EX31_RS10705 0.13 +1.8 58,240 + EX31_RS10705 0.14 -1.3 58,241 - EX31_RS10705 0.14 -0.7 58,287 - EX31_RS10705 0.18 +1.3 58,327 + EX31_RS10705 0.22 -1.5 58,328 - EX31_RS10705 0.22 +0.5 58,328 - EX31_RS10705 0.22 +1.4 58,328 - EX31_RS10705 0.22 +1.9 58,328 - EX31_RS10705 0.22 +0.0 58,328 - EX31_RS10705 0.22 +1.0 58,367 - EX31_RS10705 0.25 +0.3 58,374 + EX31_RS10705 0.26 +0.3 58,374 + EX31_RS10705 0.26 +0.4 58,375 - EX31_RS10705 0.26 -1.9 58,388 + EX31_RS10705 0.27 -0.9 58,388 + EX31_RS10705 0.27 +1.9 58,388 + EX31_RS10705 0.27 -2.3 58,388 + EX31_RS10705 0.27 -2.1 58,389 - EX31_RS10705 0.27 -1.1 58,389 - EX31_RS10705 0.27 -0.7 58,389 - EX31_RS10705 0.27 -2.5 58,392 + EX31_RS10705 0.27 -0.1 58,392 + EX31_RS10705 0.27 +0.9 58,392 + EX31_RS10705 0.27 +1.1 58,392 + EX31_RS10705 0.27 -1.0 58,393 - EX31_RS10705 0.28 -0.6 58,393 - EX31_RS10705 0.28 -1.3 58,393 - EX31_RS10705 0.28 +0.3 58,395 + EX31_RS10705 0.28 -0.8 58,395 + EX31_RS10705 0.28 +0.3 58,395 + EX31_RS10705 0.28 +1.3 58,396 - EX31_RS10705 0.28 -0.1 58,473 - EX31_RS10705 0.35 -1.1 58,511 + EX31_RS10705 0.38 -0.1 58,513 + EX31_RS10705 0.38 +1.3 58,514 - EX31_RS10705 0.38 +2.0 58,514 - EX31_RS10705 0.38 -0.1 58,514 - EX31_RS10705 0.38 +0.1 58,628 + EX31_RS10705 0.48 +0.2 58,650 - EX31_RS10705 0.50 -0.9 58,796 + EX31_RS10705 0.63 +0.8 58,796 + EX31_RS10705 0.63 +1.6 58,797 - EX31_RS10705 0.63 -0.7 58,797 - EX31_RS10705 0.63 -0.2 58,797 - EX31_RS10705 0.63 -1.7 58,797 - EX31_RS10705 0.63 -0.1 58,797 - EX31_RS10705 0.63 +0.2 58,797 - EX31_RS10705 0.63 +0.4 58,797 - EX31_RS10705 0.63 +0.2 58,798 + EX31_RS10705 0.63 -2.1 58,816 - EX31_RS10705 0.65 +0.9 58,816 - EX31_RS10705 0.65 -1.0 58,936 - EX31_RS10705 0.75 +0.2 58,936 - EX31_RS10705 0.75 +0.4 58,936 - EX31_RS10705 0.75 +0.1 59,177 + -2.1 59,178 - -1.9 59,178 - +3.0 59,214 + +0.5 59,215 - -0.1 59,317 - EX31_RS10710 0.12 +1.9 59,374 + EX31_RS10710 0.26 -1.1 59,374 + EX31_RS10710 0.26 -0.1 59,374 + EX31_RS10710 0.26 -1.7 59,374 + EX31_RS10710 0.26 +1.9 59,374 + EX31_RS10710 0.26 -0.7 59,374 + EX31_RS10710 0.26 +0.5 59,375 - EX31_RS10710 0.26 -1.5 59,375 - EX31_RS10710 0.26 -1.5 59,375 - EX31_RS10710 0.26 -1.1 59,375 - EX31_RS10710 0.26 +1.6 59,375 - EX31_RS10710 0.26 +0.1 59,375 - EX31_RS10710 0.26 +0.2 59,375 - EX31_RS10710 0.26 -1.1 59,377 - EX31_RS10710 0.27 +0.5 59,377 - EX31_RS10710 0.27 -0.7 59,377 - EX31_RS10710 0.27 +1.2 59,377 - EX31_RS10710 0.27 +0.5 59,452 + EX31_RS10710 0.45 +0.9 59,490 + EX31_RS10710 0.54 -0.9 59,496 + EX31_RS10710 0.55 -0.1 59,533 + EX31_RS10710 0.64 +0.5 59,533 + EX31_RS10710 0.64 -0.1 59,533 + EX31_RS10710 0.64 -0.9 59,534 - EX31_RS10710 0.64 -1.1 59,535 + EX31_RS10710 0.65 +0.3 59,536 - EX31_RS10710 0.65 -1.1 59,615 - EX31_RS10710 0.84 -0.5 59,615 - EX31_RS10710 0.84 +0.4 59,617 + EX31_RS10710 0.84 +0.9 59,617 + EX31_RS10710 0.84 +3.2 59,662 + +0.9 59,730 + EX31_RS10715 0.23 +2.3 59,730 + EX31_RS10715 0.23 +0.5 59,730 + EX31_RS10715 0.23 +1.7 59,731 - EX31_RS10715 0.23 +0.9 59,731 - EX31_RS10715 0.23 +1.2 59,731 - EX31_RS10715 0.23 +0.4 59,731 - EX31_RS10715 0.23 -1.6 59,731 - EX31_RS10715 0.23 -1.0 59,732 + EX31_RS10715 0.24 +0.0 59,732 + EX31_RS10715 0.24 -1.1 59,732 + EX31_RS10715 0.24 +1.0 59,732 + EX31_RS10715 0.24 +1.2 59,732 + EX31_RS10715 0.24 -1.5 59,732 + EX31_RS10715 0.24 +0.4 59,733 - EX31_RS10715 0.24 -1.1 59,733 - EX31_RS10715 0.24 +1.4 59,923 + -1.9 59,923 + +1.9 59,924 - -0.0 59,925 + +2.3 59,967 + +1.4 59,968 - +2.3 59,968 - -1.9 59,970 + +1.2 59,970 + -1.1 59,970 + +0.2 59,971 - -0.9 59,971 - -1.5 59,971 - +0.5 59,971 - +1.5 59,971 - +0.9 59,972 + +1.6 59,972 + +0.3 59,973 - -0.1 59,973 - +1.2 59,973 - -0.7 59,973 - -0.1 59,974 + +1.2 59,974 + -0.7 59,974 + -0.7 59,974 + +0.5 59,975 - +0.4 59,975 - -0.2 59,975 - -0.1 59,975 - -1.1 59,975 - -1.1 60,015 + +0.9 60,016 - +3.3 60,016 - +1.7 60,016 - +0.3 60,048 + +1.5 60,049 - +0.9 60,149 + -1.5 60,205 + EX31_RS10720 0.12 -1.7
Or see this region's nucleotide sequence