Strain Fitness in Rahnella sp. WP5 around EX31_RS10295

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10290 and EX31_RS10295 are separated by 36 nucleotidesEX31_RS10295 and EX31_RS10300 are separated by 122 nucleotides EX31_RS10290: EX31_RS10290 - sugar ABC transporter permease, at 271,759 to 272,739 _RS10290 EX31_RS10295: EX31_RS10295 - ABC transporter substrate-binding protein, at 272,776 to 274,041 _RS10295 EX31_RS10300: EX31_RS10300 - LysR family transcriptional regulator, at 274,164 to 275,099 _RS10300 Position (kb) 272 273 274 275Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 271.936 kb on - strand, within EX31_RS10290at 271.937 kb on + strand, within EX31_RS10290at 271.938 kb on - strand, within EX31_RS10290at 271.938 kb on - strand, within EX31_RS10290at 271.938 kb on - strand, within EX31_RS10290at 272.072 kb on + strand, within EX31_RS10290at 272.209 kb on - strand, within EX31_RS10290at 272.469 kb on - strand, within EX31_RS10290at 272.471 kb on + strand, within EX31_RS10290at 272.498 kb on + strand, within EX31_RS10290at 272.499 kb on - strand, within EX31_RS10290at 272.499 kb on - strand, within EX31_RS10290at 272.561 kb on + strand, within EX31_RS10290at 272.653 kb on + strandat 272.796 kb on + strandat 272.797 kb on - strandat 272.867 kb on + strandat 272.867 kb on + strandat 272.868 kb on - strandat 272.868 kb on - strandat 272.868 kb on - strandat 272.879 kb on + strandat 272.880 kb on - strandat 272.904 kb on - strand, within EX31_RS10295at 272.904 kb on - strand, within EX31_RS10295at 272.973 kb on - strand, within EX31_RS10295at 273.006 kb on - strand, within EX31_RS10295at 273.154 kb on - strand, within EX31_RS10295at 273.245 kb on + strand, within EX31_RS10295at 273.246 kb on - strand, within EX31_RS10295at 273.246 kb on - strand, within EX31_RS10295at 273.311 kb on + strand, within EX31_RS10295at 273.312 kb on - strand, within EX31_RS10295at 273.316 kb on + strand, within EX31_RS10295at 273.316 kb on + strand, within EX31_RS10295at 273.316 kb on + strand, within EX31_RS10295at 273.316 kb on + strand, within EX31_RS10295at 273.316 kb on + strand, within EX31_RS10295at 273.317 kb on - strand, within EX31_RS10295at 273.317 kb on - strand, within EX31_RS10295at 273.411 kb on + strand, within EX31_RS10295at 273.412 kb on - strand, within EX31_RS10295at 273.418 kb on - strand, within EX31_RS10295at 273.476 kb on + strand, within EX31_RS10295at 273.477 kb on - strand, within EX31_RS10295at 273.556 kb on - strand, within EX31_RS10295at 273.596 kb on + strand, within EX31_RS10295at 273.644 kb on + strand, within EX31_RS10295at 273.644 kb on + strand, within EX31_RS10295at 273.644 kb on + strand, within EX31_RS10295at 273.644 kb on + strand, within EX31_RS10295at 273.645 kb on - strand, within EX31_RS10295at 273.730 kb on - strand, within EX31_RS10295at 273.754 kb on - strand, within EX31_RS10295at 273.824 kb on - strand, within EX31_RS10295at 273.824 kb on - strand, within EX31_RS10295at 273.915 kb on + strandat 273.915 kb on + strandat 273.916 kb on - strandat 274.030 kb on + strandat 274.030 kb on + strandat 274.030 kb on + strandat 274.030 kb on + strandat 274.046 kb on + strandat 274.047 kb on - strandat 274.076 kb on + strandat 274.076 kb on + strandat 274.077 kb on - strandat 274.077 kb on - strandat 274.145 kb on + strandat 274.145 kb on + strandat 274.248 kb on - strandat 274.262 kb on + strand, within EX31_RS10300at 274.262 kb on + strand, within EX31_RS10300at 274.262 kb on + strand, within EX31_RS10300at 274.263 kb on - strand, within EX31_RS10300at 274.268 kb on + strand, within EX31_RS10300at 274.268 kb on + strand, within EX31_RS10300at 274.271 kb on + strand, within EX31_RS10300at 274.385 kb on + strand, within EX31_RS10300at 274.385 kb on + strand, within EX31_RS10300at 274.418 kb on + strand, within EX31_RS10300at 274.484 kb on - strand, within EX31_RS10300at 274.503 kb on + strand, within EX31_RS10300at 274.525 kb on + strand, within EX31_RS10300at 274.525 kb on + strand, within EX31_RS10300at 274.529 kb on + strand, within EX31_RS10300at 274.570 kb on + strand, within EX31_RS10300at 274.793 kb on + strand, within EX31_RS10300at 274.793 kb on + strand, within EX31_RS10300at 274.793 kb on + strand, within EX31_RS10300at 274.793 kb on + strand, within EX31_RS10300at 274.794 kb on - strand, within EX31_RS10300at 274.794 kb on - strand, within EX31_RS10300at 274.839 kb on - strand, within EX31_RS10300at 274.839 kb on - strand, within EX31_RS10300at 274.856 kb on + strand, within EX31_RS10300at 274.856 kb on + strand, within EX31_RS10300at 274.857 kb on - strand, within EX31_RS10300at 274.935 kb on + strand, within EX31_RS10300at 274.936 kb on - strand, within EX31_RS10300at 274.936 kb on - strand, within EX31_RS10300at 274.955 kb on + strand, within EX31_RS10300at 274.956 kb on - strand, within EX31_RS10300at 274.957 kb on + strand, within EX31_RS10300at 274.957 kb on + strand, within EX31_RS10300at 274.958 kb on - strand, within EX31_RS10300at 274.958 kb on - strand, within EX31_RS10300at 274.958 kb on - strand, within EX31_RS10300at 275.004 kb on + strand, within EX31_RS10300at 275.004 kb on + strand, within EX31_RS10300at 275.004 kb on + strand, within EX31_RS10300at 275.004 kb on + strand, within EX31_RS10300at 275.005 kb on - strand, within EX31_RS10300at 275.005 kb on - strand, within EX31_RS10300at 275.005 kb on - strand, within EX31_RS10300at 275.005 kb on - strand, within EX31_RS10300at 275.006 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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271,936 - EX31_RS10290 0.18 -0.9
271,937 + EX31_RS10290 0.18 +3.5
271,938 - EX31_RS10290 0.18 +1.7
271,938 - EX31_RS10290 0.18 +0.7
271,938 - EX31_RS10290 0.18 +1.2
272,072 + EX31_RS10290 0.32 +1.6
272,209 - EX31_RS10290 0.46 -1.3
272,469 - EX31_RS10290 0.72 +0.1
272,471 + EX31_RS10290 0.73 +2.3
272,498 + EX31_RS10290 0.75 -1.6
272,499 - EX31_RS10290 0.75 +0.9
272,499 - EX31_RS10290 0.75 -0.1
272,561 + EX31_RS10290 0.82 -0.3
272,653 + +1.3
272,796 + +0.7
272,797 - +0.8
272,867 + +1.7
272,867 + +0.7
272,868 - -0.3
272,868 - -0.6
272,868 - +0.8
272,879 + -0.8
272,880 - -0.3
272,904 - EX31_RS10295 0.10 +0.5
272,904 - EX31_RS10295 0.10 -1.3
272,973 - EX31_RS10295 0.16 -1.6
273,006 - EX31_RS10295 0.18 +0.8
273,154 - EX31_RS10295 0.30 +0.9
273,245 + EX31_RS10295 0.37 -0.3
273,246 - EX31_RS10295 0.37 -0.9
273,246 - EX31_RS10295 0.37 +0.7
273,311 + EX31_RS10295 0.42 -2.1
273,312 - EX31_RS10295 0.42 +1.7
273,316 + EX31_RS10295 0.43 +1.6
273,316 + EX31_RS10295 0.43 -1.8
273,316 + EX31_RS10295 0.43 +0.3
273,316 + EX31_RS10295 0.43 -2.1
273,316 + EX31_RS10295 0.43 +2.7
273,317 - EX31_RS10295 0.43 +2.6
273,317 - EX31_RS10295 0.43 -0.3
273,411 + EX31_RS10295 0.50 -1.1
273,412 - EX31_RS10295 0.50 +1.3
273,418 - EX31_RS10295 0.51 -1.9
273,476 + EX31_RS10295 0.55 -0.7
273,477 - EX31_RS10295 0.55 -0.9
273,556 - EX31_RS10295 0.62 -1.3
273,596 + EX31_RS10295 0.65 +1.4
273,644 + EX31_RS10295 0.69 +1.5
273,644 + EX31_RS10295 0.69 -0.7
273,644 + EX31_RS10295 0.69 -0.3
273,644 + EX31_RS10295 0.69 +0.7
273,645 - EX31_RS10295 0.69 +0.5
273,730 - EX31_RS10295 0.75 +0.5
273,754 - EX31_RS10295 0.77 +1.1
273,824 - EX31_RS10295 0.83 +2.4
273,824 - EX31_RS10295 0.83 +0.7
273,915 + -1.6
273,915 + +1.8
273,916 - -0.1
274,030 + -0.3
274,030 + -3.1
274,030 + +0.1
274,030 + -0.5
274,046 + -0.5
274,047 - +0.7
274,076 + -1.6
274,076 + +1.0
274,077 - +0.7
274,077 - -0.9
274,145 + -1.9
274,145 + -0.1
274,248 - +2.1
274,262 + EX31_RS10300 0.10 -0.8
274,262 + EX31_RS10300 0.10 +0.3
274,262 + EX31_RS10300 0.10 +0.7
274,263 - EX31_RS10300 0.11 +0.4
274,268 + EX31_RS10300 0.11 +0.4
274,268 + EX31_RS10300 0.11 -1.6
274,271 + EX31_RS10300 0.11 -1.3
274,385 + EX31_RS10300 0.24 +0.7
274,385 + EX31_RS10300 0.24 -1.1
274,418 + EX31_RS10300 0.27 +0.0
274,484 - EX31_RS10300 0.34 +1.0
274,503 + EX31_RS10300 0.36 +0.3
274,525 + EX31_RS10300 0.39 -2.8
274,525 + EX31_RS10300 0.39 -0.5
274,529 + EX31_RS10300 0.39 -1.6
274,570 + EX31_RS10300 0.43 -0.1
274,793 + EX31_RS10300 0.67 -1.6
274,793 + EX31_RS10300 0.67 +0.6
274,793 + EX31_RS10300 0.67 +0.1
274,793 + EX31_RS10300 0.67 +0.7
274,794 - EX31_RS10300 0.67 +2.3
274,794 - EX31_RS10300 0.67 +1.7
274,839 - EX31_RS10300 0.72 -0.9
274,839 - EX31_RS10300 0.72 -0.2
274,856 + EX31_RS10300 0.74 -1.9
274,856 + EX31_RS10300 0.74 +1.4
274,857 - EX31_RS10300 0.74 -0.9
274,935 + EX31_RS10300 0.82 -0.9
274,936 - EX31_RS10300 0.82 +1.1
274,936 - EX31_RS10300 0.82 +0.7
274,955 + EX31_RS10300 0.85 -0.9
274,956 - EX31_RS10300 0.85 -1.6
274,957 + EX31_RS10300 0.85 +1.0
274,957 + EX31_RS10300 0.85 -2.5
274,958 - EX31_RS10300 0.85 +1.5
274,958 - EX31_RS10300 0.85 +0.7
274,958 - EX31_RS10300 0.85 -1.1
275,004 + EX31_RS10300 0.90 +1.7
275,004 + EX31_RS10300 0.90 +2.3
275,004 + EX31_RS10300 0.90 +0.3
275,004 + EX31_RS10300 0.90 -1.6
275,005 - EX31_RS10300 0.90 -1.6
275,005 - EX31_RS10300 0.90 -0.9
275,005 - EX31_RS10300 0.90 -1.3
275,005 - EX31_RS10300 0.90 +0.7
275,006 + -0.3

Or see this region's nucleotide sequence