Strain Fitness in Rahnella sp. WP5 around EX31_RS10155

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10145 and EX31_RS10150 overlap by 1 nucleotidesEX31_RS10150 and EX31_RS10155 overlap by 4 nucleotidesEX31_RS10155 and EX31_RS10160 are separated by 633 nucleotides EX31_RS10145: EX31_RS10145 - ABC transporter permease, at 240,665 to 241,585 _RS10145 EX31_RS10150: EX31_RS10150 - ABC transporter permease, at 241,585 to 242,451 _RS10150 EX31_RS10155: EX31_RS10155 - ROK family protein, at 242,448 to 243,377 _RS10155 EX31_RS10160: EX31_RS10160 - diaminopimelate epimerase, at 244,011 to 244,850 _RS10160 Position (kb) 242 243 244Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 241.475 kb on + strand, within EX31_RS10145at 241.525 kb on - strandat 241.545 kb on + strandat 241.649 kb on + strandat 241.683 kb on + strand, within EX31_RS10150at 241.683 kb on + strand, within EX31_RS10150at 241.683 kb on + strand, within EX31_RS10150at 241.684 kb on - strand, within EX31_RS10150at 241.810 kb on + strand, within EX31_RS10150at 241.840 kb on + strand, within EX31_RS10150at 241.840 kb on + strand, within EX31_RS10150at 241.840 kb on + strand, within EX31_RS10150at 241.928 kb on + strand, within EX31_RS10150at 242.019 kb on + strand, within EX31_RS10150at 242.079 kb on - strand, within EX31_RS10150at 242.169 kb on + strand, within EX31_RS10150at 242.349 kb on + strand, within EX31_RS10150at 242.349 kb on + strand, within EX31_RS10150at 242.349 kb on + strand, within EX31_RS10150at 242.349 kb on + strand, within EX31_RS10150at 242.350 kb on - strand, within EX31_RS10150at 242.354 kb on - strand, within EX31_RS10150at 242.382 kb on + strandat 242.382 kb on + strandat 242.382 kb on + strandat 242.403 kb on + strandat 242.408 kb on + strandat 242.409 kb on - strandat 242.409 kb on - strandat 242.604 kb on + strand, within EX31_RS10155at 242.604 kb on + strand, within EX31_RS10155at 242.604 kb on + strand, within EX31_RS10155at 242.605 kb on - strand, within EX31_RS10155at 242.605 kb on - strand, within EX31_RS10155at 242.605 kb on - strand, within EX31_RS10155at 242.605 kb on - strand, within EX31_RS10155at 242.605 kb on - strand, within EX31_RS10155at 242.605 kb on - strand, within EX31_RS10155at 243.081 kb on - strand, within EX31_RS10155at 243.245 kb on + strand, within EX31_RS10155at 243.246 kb on - strand, within EX31_RS10155at 243.246 kb on - strand, within EX31_RS10155at 243.292 kb on - strandat 243.292 kb on - strandat 243.292 kb on - strandat 243.395 kb on + strandat 243.661 kb on + strandat 243.674 kb on - strandat 243.674 kb on - strandat 243.678 kb on - strandat 243.678 kb on - strandat 243.727 kb on + strandat 243.727 kb on + strandat 243.727 kb on + strandat 243.727 kb on + strandat 243.789 kb on + strandat 243.789 kb on + strandat 243.800 kb on + strandat 243.801 kb on - strandat 243.898 kb on - strandat 243.939 kb on - strandat 243.939 kb on - strandat 243.947 kb on + strandat 243.956 kb on + strandat 243.956 kb on + strandat 243.957 kb on - strandat 243.974 kb on + strandat 243.975 kb on - strandat 243.980 kb on + strandat 243.980 kb on + strandat 244.004 kb on + strandat 244.004 kb on + strandat 244.005 kb on - strandat 244.181 kb on + strand, within EX31_RS10160at 244.182 kb on - strand, within EX31_RS10160at 244.184 kb on + strand, within EX31_RS10160at 244.233 kb on - strand, within EX31_RS10160at 244.292 kb on + strand, within EX31_RS10160at 244.292 kb on + strand, within EX31_RS10160at 244.309 kb on + strand, within EX31_RS10160at 244.309 kb on + strand, within EX31_RS10160at 244.309 kb on + strand, within EX31_RS10160at 244.309 kb on + strand, within EX31_RS10160at 244.310 kb on - strand, within EX31_RS10160

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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241,475 + EX31_RS10145 0.88 +1.5
241,525 - -1.3
241,545 + +0.4
241,649 + -1.9
241,683 + EX31_RS10150 0.11 -3.6
241,683 + EX31_RS10150 0.11 +1.1
241,683 + EX31_RS10150 0.11 +0.3
241,684 - EX31_RS10150 0.11 -0.8
241,810 + EX31_RS10150 0.26 +1.7
241,840 + EX31_RS10150 0.29 -2.8
241,840 + EX31_RS10150 0.29 -1.1
241,840 + EX31_RS10150 0.29 -1.3
241,928 + EX31_RS10150 0.40 -0.3
242,019 + EX31_RS10150 0.50 -0.1
242,079 - EX31_RS10150 0.57 -1.6
242,169 + EX31_RS10150 0.67 -0.9
242,349 + EX31_RS10150 0.88 +1.1
242,349 + EX31_RS10150 0.88 -0.9
242,349 + EX31_RS10150 0.88 -2.1
242,349 + EX31_RS10150 0.88 -1.4
242,350 - EX31_RS10150 0.88 +2.5
242,354 - EX31_RS10150 0.89 +1.1
242,382 + -1.3
242,382 + -1.6
242,382 + -0.3
242,403 + +2.3
242,408 + +0.1
242,409 - -0.8
242,409 - +0.3
242,604 + EX31_RS10155 0.17 -3.4
242,604 + EX31_RS10155 0.17 -0.9
242,604 + EX31_RS10155 0.17 -0.9
242,605 - EX31_RS10155 0.17 +0.2
242,605 - EX31_RS10155 0.17 -1.3
242,605 - EX31_RS10155 0.17 -1.6
242,605 - EX31_RS10155 0.17 -2.6
242,605 - EX31_RS10155 0.17 +0.7
242,605 - EX31_RS10155 0.17 -0.8
243,081 - EX31_RS10155 0.68 -0.2
243,245 + EX31_RS10155 0.86 -1.3
243,246 - EX31_RS10155 0.86 +0.4
243,246 - EX31_RS10155 0.86 +0.3
243,292 - -1.3
243,292 - +1.9
243,292 - +0.4
243,395 + +0.5
243,661 + -0.3
243,674 - -2.3
243,674 - -0.5
243,678 - +0.1
243,678 - -1.6
243,727 + -0.9
243,727 + -2.3
243,727 + +1.9
243,727 + +0.2
243,789 + +3.0
243,789 + -0.3
243,800 + -0.6
243,801 - -2.3
243,898 - +1.5
243,939 - -0.3
243,939 - -0.1
243,947 + -2.9
243,956 + +1.0
243,956 + +2.8
243,957 - -1.1
243,974 + +0.7
243,975 - +0.3
243,980 + +0.1
243,980 + -1.3
244,004 + +0.7
244,004 + -0.3
244,005 - -0.3
244,181 + EX31_RS10160 0.20 -0.6
244,182 - EX31_RS10160 0.20 -0.3
244,184 + EX31_RS10160 0.21 -2.1
244,233 - EX31_RS10160 0.26 -0.6
244,292 + EX31_RS10160 0.33 -0.9
244,292 + EX31_RS10160 0.33 +0.8
244,309 + EX31_RS10160 0.35 -1.3
244,309 + EX31_RS10160 0.35 -0.6
244,309 + EX31_RS10160 0.35 -0.2
244,309 + EX31_RS10160 0.35 +1.2
244,310 - EX31_RS10160 0.36 +1.4

Or see this region's nucleotide sequence