Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09805 and EX31_RS09810 are separated by 112 nucleotides EX31_RS09810 and EX31_RS09815 are separated by 58 nucleotides
EX31_RS09805: EX31_RS09805 - transcriptional regulator LsrR, at 167,349 to 168,323
_RS09805
EX31_RS09810: EX31_RS09810 - autoinducer-2 kinase, at 168,436 to 169,986
_RS09810
EX31_RS09815: EX31_RS09815 - 2-keto-3-deoxygluconate transporter, at 170,045 to 171,043
_RS09815
Position (kb) 168
169
170 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 167.439 kb on + strand at 167.439 kb on + strand at 167.439 kb on + strand at 167.442 kb on + strand at 167.555 kb on + strand, within EX31_RS09805 at 167.555 kb on + strand, within EX31_RS09805 at 167.556 kb on - strand, within EX31_RS09805 at 167.753 kb on + strand, within EX31_RS09805 at 167.753 kb on + strand, within EX31_RS09805 at 167.754 kb on - strand, within EX31_RS09805 at 167.829 kb on + strand, within EX31_RS09805 at 167.831 kb on + strand, within EX31_RS09805 at 167.831 kb on + strand, within EX31_RS09805 at 167.831 kb on + strand, within EX31_RS09805 at 167.832 kb on - strand, within EX31_RS09805 at 167.876 kb on + strand, within EX31_RS09805 at 167.936 kb on + strand, within EX31_RS09805 at 167.936 kb on + strand, within EX31_RS09805 at 167.937 kb on - strand, within EX31_RS09805 at 167.941 kb on + strand, within EX31_RS09805 at 167.941 kb on + strand, within EX31_RS09805 at 167.941 kb on + strand, within EX31_RS09805 at 167.941 kb on + strand, within EX31_RS09805 at 167.941 kb on + strand, within EX31_RS09805 at 167.941 kb on + strand, within EX31_RS09805 at 167.976 kb on - strand, within EX31_RS09805 at 168.039 kb on + strand, within EX31_RS09805 at 168.202 kb on + strand, within EX31_RS09805 at 168.266 kb on + strand at 168.266 kb on + strand at 168.267 kb on - strand at 168.277 kb on + strand at 168.335 kb on + strand at 168.335 kb on + strand at 168.369 kb on + strand at 168.430 kb on + strand at 168.431 kb on - strand at 168.688 kb on + strand, within EX31_RS09810 at 168.849 kb on - strand, within EX31_RS09810 at 168.894 kb on + strand, within EX31_RS09810 at 168.897 kb on + strand, within EX31_RS09810 at 168.897 kb on + strand, within EX31_RS09810 at 168.897 kb on + strand, within EX31_RS09810 at 168.897 kb on + strand, within EX31_RS09810 at 168.898 kb on - strand, within EX31_RS09810 at 168.987 kb on - strand, within EX31_RS09810 at 169.043 kb on + strand, within EX31_RS09810 at 169.043 kb on + strand, within EX31_RS09810 at 169.043 kb on + strand, within EX31_RS09810 at 169.043 kb on + strand, within EX31_RS09810 at 169.043 kb on + strand, within EX31_RS09810 at 169.044 kb on - strand, within EX31_RS09810 at 169.044 kb on - strand, within EX31_RS09810 at 169.082 kb on - strand, within EX31_RS09810 at 169.414 kb on + strand, within EX31_RS09810 at 169.414 kb on + strand, within EX31_RS09810 at 169.414 kb on + strand, within EX31_RS09810 at 169.415 kb on - strand, within EX31_RS09810 at 169.415 kb on - strand, within EX31_RS09810 at 169.415 kb on - strand, within EX31_RS09810 at 169.415 kb on - strand, within EX31_RS09810 at 169.507 kb on + strand, within EX31_RS09810 at 169.508 kb on - strand, within EX31_RS09810 at 169.583 kb on + strand, within EX31_RS09810 at 169.614 kb on + strand, within EX31_RS09810 at 169.614 kb on + strand, within EX31_RS09810 at 169.694 kb on + strand, within EX31_RS09810 at 169.694 kb on + strand, within EX31_RS09810 at 169.694 kb on + strand, within EX31_RS09810 at 169.695 kb on - strand, within EX31_RS09810 at 169.695 kb on - strand, within EX31_RS09810 at 169.804 kb on + strand, within EX31_RS09810 at 169.805 kb on - strand, within EX31_RS09810 at 169.856 kb on - strand at 169.885 kb on + strand at 169.918 kb on + strand at 169.919 kb on - strand at 170.448 kb on - strand, within EX31_RS09815 at 170.668 kb on - strand, within EX31_RS09815 at 170.827 kb on + strand, within EX31_RS09815 at 170.828 kb on - strand, within EX31_RS09815 at 170.896 kb on + strand, within EX31_RS09815 at 170.897 kb on - strand, within EX31_RS09815 at 170.897 kb on - strand, within EX31_RS09815 at 170.897 kb on - strand, within EX31_RS09815 at 170.900 kb on + strand, within EX31_RS09815
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 167,439 + -0.3 167,439 + +2.1 167,439 + +1.7 167,442 + +1.3 167,555 + EX31_RS09805 0.21 +2.6 167,555 + EX31_RS09805 0.21 +2.2 167,556 - EX31_RS09805 0.21 -1.4 167,753 + EX31_RS09805 0.41 +0.4 167,753 + EX31_RS09805 0.41 +0.3 167,754 - EX31_RS09805 0.42 -0.2 167,829 + EX31_RS09805 0.49 -0.2 167,831 + EX31_RS09805 0.49 +0.7 167,831 + EX31_RS09805 0.49 +2.1 167,831 + EX31_RS09805 0.49 +1.7 167,832 - EX31_RS09805 0.50 +0.7 167,876 + EX31_RS09805 0.54 +0.7 167,936 + EX31_RS09805 0.60 +0.7 167,936 + EX31_RS09805 0.60 -0.3 167,937 - EX31_RS09805 0.60 +0.7 167,941 + EX31_RS09805 0.61 +0.7 167,941 + EX31_RS09805 0.61 +1.7 167,941 + EX31_RS09805 0.61 -2.3 167,941 + EX31_RS09805 0.61 +2.1 167,941 + EX31_RS09805 0.61 +4.1 167,941 + EX31_RS09805 0.61 +0.3 167,976 - EX31_RS09805 0.64 +1.3 168,039 + EX31_RS09805 0.71 +0.9 168,202 + EX31_RS09805 0.87 +2.0 168,266 + -1.3 168,266 + -0.9 168,267 - +0.7 168,277 + -1.8 168,335 + +0.7 168,335 + +0.3 168,369 + +0.9 168,430 + +0.7 168,431 - -2.3 168,688 + EX31_RS09810 0.16 +0.5 168,849 - EX31_RS09810 0.27 -3.0 168,894 + EX31_RS09810 0.30 +0.7 168,897 + EX31_RS09810 0.30 -1.6 168,897 + EX31_RS09810 0.30 +1.5 168,897 + EX31_RS09810 0.30 -0.9 168,897 + EX31_RS09810 0.30 +0.7 168,898 - EX31_RS09810 0.30 -0.9 168,987 - EX31_RS09810 0.36 -0.6 169,043 + EX31_RS09810 0.39 +0.7 169,043 + EX31_RS09810 0.39 +0.7 169,043 + EX31_RS09810 0.39 +1.0 169,043 + EX31_RS09810 0.39 -0.3 169,043 + EX31_RS09810 0.39 -0.9 169,044 - EX31_RS09810 0.39 -1.9 169,044 - EX31_RS09810 0.39 -1.0 169,082 - EX31_RS09810 0.42 +2.0 169,414 + EX31_RS09810 0.63 +0.2 169,414 + EX31_RS09810 0.63 -2.5 169,414 + EX31_RS09810 0.63 -2.3 169,415 - EX31_RS09810 0.63 -2.3 169,415 - EX31_RS09810 0.63 -0.9 169,415 - EX31_RS09810 0.63 -0.1 169,415 - EX31_RS09810 0.63 +1.3 169,507 + EX31_RS09810 0.69 -0.3 169,508 - EX31_RS09810 0.69 +1.7 169,583 + EX31_RS09810 0.74 -1.1 169,614 + EX31_RS09810 0.76 +0.5 169,614 + EX31_RS09810 0.76 -0.9 169,694 + EX31_RS09810 0.81 -1.3 169,694 + EX31_RS09810 0.81 -0.7 169,694 + EX31_RS09810 0.81 +0.7 169,695 - EX31_RS09810 0.81 +2.3 169,695 - EX31_RS09810 0.81 +1.2 169,804 + EX31_RS09810 0.88 -2.5 169,805 - EX31_RS09810 0.88 -1.3 169,856 - -1.3 169,885 + -0.9 169,918 + -2.3 169,919 - +0.7 170,448 - EX31_RS09815 0.40 -0.9 170,668 - EX31_RS09815 0.62 -0.9 170,827 + EX31_RS09815 0.78 +1.9 170,828 - EX31_RS09815 0.78 +0.4 170,896 + EX31_RS09815 0.85 +1.3 170,897 - EX31_RS09815 0.85 -0.2 170,897 - EX31_RS09815 0.85 -0.7 170,897 - EX31_RS09815 0.85 -0.3 170,900 + EX31_RS09815 0.86 -1.5
Or see this region's nucleotide sequence