Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09700 and EX31_RS09705 are separated by 92 nucleotides EX31_RS09705 and EX31_RS09710 are separated by 3 nucleotides EX31_RS09710 and EX31_RS09715 are separated by 156 nucleotides
EX31_RS09700: EX31_RS09700 - GlpM family protein, at 141,090 to 141,431
_RS09700
EX31_RS09705: EX31_RS09705 - HAD-IB family hydrolase, at 141,524 to 142,237
_RS09705
EX31_RS09710: EX31_RS09710 - LysR family transcriptional regulator, at 142,241 to 143,164
_RS09710
EX31_RS09715: EX31_RS09715 - M20 family metallopeptidase, at 143,321 to 144,742
_RS09715
Position (kb) 142
143
144 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 141.298 kb on - strand, within EX31_RS09700 at 141.298 kb on - strand, within EX31_RS09700 at 141.307 kb on - strand, within EX31_RS09700 at 141.351 kb on + strand, within EX31_RS09700 at 141.404 kb on - strand at 141.611 kb on + strand, within EX31_RS09705 at 141.667 kb on + strand, within EX31_RS09705 at 141.667 kb on + strand, within EX31_RS09705 at 141.667 kb on + strand, within EX31_RS09705 at 141.667 kb on + strand, within EX31_RS09705 at 141.668 kb on - strand, within EX31_RS09705 at 141.791 kb on - strand, within EX31_RS09705 at 141.853 kb on + strand, within EX31_RS09705 at 141.854 kb on - strand, within EX31_RS09705 at 141.878 kb on - strand, within EX31_RS09705 at 141.994 kb on + strand, within EX31_RS09705 at 141.995 kb on - strand, within EX31_RS09705 at 142.030 kb on - strand, within EX31_RS09705 at 142.064 kb on + strand, within EX31_RS09705 at 142.065 kb on - strand, within EX31_RS09705 at 142.065 kb on - strand, within EX31_RS09705 at 142.065 kb on - strand, within EX31_RS09705 at 142.065 kb on - strand, within EX31_RS09705 at 142.075 kb on - strand, within EX31_RS09705 at 142.090 kb on + strand, within EX31_RS09705 at 142.091 kb on - strand, within EX31_RS09705 at 142.141 kb on + strand, within EX31_RS09705 at 142.243 kb on - strand at 142.298 kb on - strand at 142.364 kb on - strand, within EX31_RS09710 at 142.364 kb on - strand, within EX31_RS09710 at 142.364 kb on - strand, within EX31_RS09710 at 142.364 kb on - strand, within EX31_RS09710 at 142.385 kb on - strand, within EX31_RS09710 at 142.425 kb on + strand, within EX31_RS09710 at 142.425 kb on + strand, within EX31_RS09710 at 142.426 kb on - strand, within EX31_RS09710 at 142.426 kb on - strand, within EX31_RS09710 at 142.429 kb on + strand, within EX31_RS09710 at 142.429 kb on + strand, within EX31_RS09710 at 143.038 kb on + strand, within EX31_RS09710 at 143.091 kb on - strand at 143.091 kb on - strand at 143.180 kb on + strand at 143.180 kb on + strand at 143.180 kb on + strand at 143.199 kb on + strand at 143.200 kb on - strand at 143.234 kb on - strand at 143.288 kb on + strand at 143.288 kb on + strand at 143.288 kb on + strand at 143.288 kb on + strand at 143.288 kb on + strand at 143.288 kb on + strand at 143.288 kb on + strand at 143.288 kb on + strand at 143.288 kb on + strand at 143.289 kb on - strand at 143.289 kb on - strand at 143.375 kb on + strand at 143.376 kb on - strand at 143.404 kb on + strand at 143.404 kb on + strand at 143.454 kb on - strand at 143.551 kb on + strand, within EX31_RS09715 at 143.552 kb on - strand, within EX31_RS09715 at 143.584 kb on - strand, within EX31_RS09715 at 143.722 kb on + strand, within EX31_RS09715 at 143.722 kb on + strand, within EX31_RS09715 at 143.725 kb on + strand, within EX31_RS09715 at 143.982 kb on - strand, within EX31_RS09715 at 144.072 kb on + strand, within EX31_RS09715 at 144.089 kb on - strand, within EX31_RS09715
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 141,298 - EX31_RS09700 0.61 -1.9 141,298 - EX31_RS09700 0.61 -1.6 141,307 - EX31_RS09700 0.63 -1.9 141,351 + EX31_RS09700 0.76 -0.9 141,404 - -0.9 141,611 + EX31_RS09705 0.12 -0.1 141,667 + EX31_RS09705 0.20 -0.3 141,667 + EX31_RS09705 0.20 +2.3 141,667 + EX31_RS09705 0.20 +1.2 141,667 + EX31_RS09705 0.20 +2.7 141,668 - EX31_RS09705 0.20 +0.4 141,791 - EX31_RS09705 0.37 +0.4 141,853 + EX31_RS09705 0.46 -0.1 141,854 - EX31_RS09705 0.46 +0.7 141,878 - EX31_RS09705 0.50 +0.7 141,994 + EX31_RS09705 0.66 +1.1 141,995 - EX31_RS09705 0.66 +0.7 142,030 - EX31_RS09705 0.71 -0.9 142,064 + EX31_RS09705 0.76 -0.3 142,065 - EX31_RS09705 0.76 +0.4 142,065 - EX31_RS09705 0.76 -0.1 142,065 - EX31_RS09705 0.76 +0.4 142,065 - EX31_RS09705 0.76 +0.3 142,075 - EX31_RS09705 0.77 +2.5 142,090 + EX31_RS09705 0.79 -0.5 142,091 - EX31_RS09705 0.79 -2.3 142,141 + EX31_RS09705 0.86 +1.2 142,243 - +0.7 142,298 - +1.5 142,364 - EX31_RS09710 0.13 +2.3 142,364 - EX31_RS09710 0.13 +0.5 142,364 - EX31_RS09710 0.13 +0.8 142,364 - EX31_RS09710 0.13 +0.7 142,385 - EX31_RS09710 0.16 -0.9 142,425 + EX31_RS09710 0.20 -0.1 142,425 + EX31_RS09710 0.20 -1.1 142,426 - EX31_RS09710 0.20 +0.3 142,426 - EX31_RS09710 0.20 +3.5 142,429 + EX31_RS09710 0.20 -0.1 142,429 + EX31_RS09710 0.20 -0.3 143,038 + EX31_RS09710 0.86 +0.9 143,091 - -1.9 143,091 - +0.8 143,180 + -1.6 143,180 + -1.6 143,180 + +0.2 143,199 + +1.2 143,200 - -0.3 143,234 - +0.8 143,288 + +0.4 143,288 + +0.9 143,288 + -3.4 143,288 + -0.9 143,288 + +1.7 143,288 + +0.3 143,288 + +0.3 143,288 + +0.5 143,288 + -3.0 143,289 - +2.1 143,289 - +0.3 143,375 + -1.6 143,376 - +2.7 143,404 + +0.5 143,404 + +0.7 143,454 - +0.7 143,551 + EX31_RS09715 0.16 -2.5 143,552 - EX31_RS09715 0.16 -1.8 143,584 - EX31_RS09715 0.18 -2.1 143,722 + EX31_RS09715 0.28 -3.2 143,722 + EX31_RS09715 0.28 -1.6 143,725 + EX31_RS09715 0.28 +0.1 143,982 - EX31_RS09715 0.46 +0.7 144,072 + EX31_RS09715 0.53 -0.5 144,089 - EX31_RS09715 0.54 +0.4
Or see this region's nucleotide sequence