Strain Fitness in Rahnella sp. WP5 around EX31_RS07700

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07695 and EX31_RS07700 overlap by 4 nucleotidesEX31_RS07700 and EX31_RS07705 are separated by 2 nucleotides EX31_RS07695: EX31_RS07695 - phage tail tape measure protein, at 21,754 to 23,385 _RS07695 EX31_RS07700: EX31_RS07700 - phage tail protein, at 23,382 to 23,852 _RS07700 EX31_RS07705: EX31_RS07705 - tail protein, at 23,855 to 24,955 _RS07705 Position (kb) 23 24Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 22.441 kb on - strand, within EX31_RS07695at 22.446 kb on + strand, within EX31_RS07695at 22.451 kb on + strand, within EX31_RS07695at 22.451 kb on + strand, within EX31_RS07695at 22.451 kb on + strand, within EX31_RS07695at 22.451 kb on + strand, within EX31_RS07695at 22.451 kb on + strand, within EX31_RS07695at 22.451 kb on + strand, within EX31_RS07695at 22.451 kb on + strand, within EX31_RS07695at 22.451 kb on + strand, within EX31_RS07695at 22.451 kb on + strand, within EX31_RS07695at 22.451 kb on + strand, within EX31_RS07695at 22.451 kb on + strand, within EX31_RS07695at 22.452 kb on - strand, within EX31_RS07695at 22.452 kb on - strand, within EX31_RS07695at 22.452 kb on - strand, within EX31_RS07695at 22.452 kb on - strand, within EX31_RS07695at 22.452 kb on - strand, within EX31_RS07695at 22.452 kb on - strand, within EX31_RS07695at 22.452 kb on - strand, within EX31_RS07695at 22.452 kb on - strand, within EX31_RS07695at 22.471 kb on - strand, within EX31_RS07695at 22.554 kb on + strand, within EX31_RS07695at 22.608 kb on - strand, within EX31_RS07695at 22.665 kb on - strand, within EX31_RS07695at 22.680 kb on + strand, within EX31_RS07695at 22.681 kb on - strand, within EX31_RS07695at 22.681 kb on - strand, within EX31_RS07695at 22.681 kb on - strand, within EX31_RS07695at 22.681 kb on - strand, within EX31_RS07695at 22.681 kb on - strand, within EX31_RS07695at 22.704 kb on - strand, within EX31_RS07695at 22.713 kb on + strand, within EX31_RS07695at 22.713 kb on + strand, within EX31_RS07695at 22.714 kb on - strand, within EX31_RS07695at 22.815 kb on - strand, within EX31_RS07695at 22.870 kb on - strand, within EX31_RS07695at 22.889 kb on + strand, within EX31_RS07695at 22.890 kb on - strand, within EX31_RS07695at 22.902 kb on + strand, within EX31_RS07695at 22.902 kb on + strand, within EX31_RS07695at 22.903 kb on - strand, within EX31_RS07695at 22.903 kb on - strand, within EX31_RS07695at 23.070 kb on + strand, within EX31_RS07695at 23.070 kb on + strand, within EX31_RS07695at 23.070 kb on + strand, within EX31_RS07695at 23.150 kb on + strand, within EX31_RS07695at 23.151 kb on - strand, within EX31_RS07695at 23.151 kb on - strand, within EX31_RS07695at 23.151 kb on - strand, within EX31_RS07695at 23.151 kb on - strand, within EX31_RS07695at 23.188 kb on + strand, within EX31_RS07695at 23.247 kb on - strandat 23.252 kb on + strandat 23.265 kb on + strandat 23.283 kb on + strandat 23.337 kb on + strandat 23.337 kb on + strandat 23.359 kb on + strandat 23.359 kb on + strandat 23.359 kb on + strandat 23.360 kb on - strandat 23.377 kb on + strandat 23.377 kb on + strandat 23.378 kb on - strandat 23.378 kb on - strandat 23.402 kb on - strandat 23.431 kb on - strand, within EX31_RS07700at 23.438 kb on + strand, within EX31_RS07700at 23.439 kb on - strand, within EX31_RS07700at 23.457 kb on + strand, within EX31_RS07700at 23.457 kb on + strand, within EX31_RS07700at 23.457 kb on + strand, within EX31_RS07700at 23.457 kb on + strand, within EX31_RS07700at 23.457 kb on + strand, within EX31_RS07700at 23.457 kb on + strand, within EX31_RS07700at 23.458 kb on - strand, within EX31_RS07700at 23.458 kb on - strand, within EX31_RS07700at 23.458 kb on - strand, within EX31_RS07700at 23.458 kb on - strand, within EX31_RS07700at 23.548 kb on + strand, within EX31_RS07700at 23.548 kb on + strand, within EX31_RS07700at 23.549 kb on - strand, within EX31_RS07700at 23.549 kb on - strand, within EX31_RS07700at 23.549 kb on - strand, within EX31_RS07700at 23.649 kb on + strand, within EX31_RS07700at 23.673 kb on - strand, within EX31_RS07700at 23.674 kb on + strand, within EX31_RS07700at 23.697 kb on - strand, within EX31_RS07700at 23.803 kb on + strand, within EX31_RS07700at 23.803 kb on + strand, within EX31_RS07700at 23.803 kb on + strand, within EX31_RS07700at 23.803 kb on + strand, within EX31_RS07700at 23.803 kb on + strand, within EX31_RS07700at 23.803 kb on + strand, within EX31_RS07700at 23.803 kb on + strand, within EX31_RS07700at 23.803 kb on + strand, within EX31_RS07700at 23.803 kb on + strand, within EX31_RS07700at 23.804 kb on - strand, within EX31_RS07700at 23.804 kb on - strand, within EX31_RS07700at 23.804 kb on - strand, within EX31_RS07700at 23.804 kb on - strand, within EX31_RS07700at 23.804 kb on - strand, within EX31_RS07700at 23.804 kb on - strand, within EX31_RS07700at 23.804 kb on - strand, within EX31_RS07700at 23.804 kb on - strand, within EX31_RS07700at 23.804 kb on - strand, within EX31_RS07700at 23.804 kb on - strand, within EX31_RS07700at 23.804 kb on - strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.805 kb on + strand, within EX31_RS07700at 23.806 kb on - strandat 23.806 kb on - strandat 23.806 kb on - strandat 23.806 kb on - strandat 23.806 kb on - strandat 23.806 kb on - strandat 23.806 kb on - strandat 23.806 kb on - strandat 23.806 kb on - strandat 23.806 kb on - strandat 23.806 kb on - strandat 23.806 kb on - strandat 23.806 kb on - strandat 23.807 kb on + strandat 23.807 kb on + strandat 23.807 kb on + strandat 23.807 kb on + strandat 23.807 kb on + strandat 23.807 kb on + strandat 23.807 kb on + strandat 23.807 kb on + strandat 23.807 kb on + strandat 23.807 kb on + strandat 23.807 kb on + strandat 23.808 kb on - strandat 23.808 kb on - strandat 23.808 kb on - strandat 23.808 kb on - strandat 23.808 kb on - strandat 23.808 kb on - strandat 23.808 kb on - strandat 23.808 kb on - strandat 23.808 kb on - strandat 23.860 kb on + strandat 23.860 kb on + strandat 23.860 kb on + strandat 23.861 kb on - strandat 23.923 kb on + strandat 23.964 kb on + strandat 23.964 kb on + strandat 23.964 kb on + strandat 23.965 kb on - strand, within EX31_RS07705at 24.063 kb on + strand, within EX31_RS07705at 24.063 kb on + strand, within EX31_RS07705at 24.063 kb on + strand, within EX31_RS07705at 24.064 kb on - strand, within EX31_RS07705at 24.064 kb on - strand, within EX31_RS07705at 24.064 kb on - strand, within EX31_RS07705at 24.064 kb on - strand, within EX31_RS07705at 24.064 kb on - strand, within EX31_RS07705at 24.098 kb on + strand, within EX31_RS07705at 24.098 kb on + strand, within EX31_RS07705at 24.098 kb on + strand, within EX31_RS07705at 24.099 kb on - strand, within EX31_RS07705at 24.099 kb on - strand, within EX31_RS07705at 24.111 kb on - strand, within EX31_RS07705at 24.125 kb on - strand, within EX31_RS07705at 24.156 kb on + strand, within EX31_RS07705at 24.156 kb on + strand, within EX31_RS07705at 24.156 kb on + strand, within EX31_RS07705at 24.156 kb on + strand, within EX31_RS07705at 24.156 kb on + strand, within EX31_RS07705at 24.156 kb on + strand, within EX31_RS07705at 24.157 kb on - strand, within EX31_RS07705at 24.218 kb on + strand, within EX31_RS07705at 24.219 kb on - strand, within EX31_RS07705at 24.228 kb on - strand, within EX31_RS07705at 24.273 kb on + strand, within EX31_RS07705at 24.311 kb on - strand, within EX31_RS07705at 24.323 kb on - strand, within EX31_RS07705at 24.350 kb on + strand, within EX31_RS07705at 24.377 kb on + strand, within EX31_RS07705at 24.378 kb on - strand, within EX31_RS07705at 24.378 kb on - strand, within EX31_RS07705at 24.391 kb on - strand, within EX31_RS07705at 24.503 kb on + strand, within EX31_RS07705at 24.504 kb on - strand, within EX31_RS07705at 24.504 kb on - strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.527 kb on + strand, within EX31_RS07705at 24.528 kb on - strand, within EX31_RS07705at 24.632 kb on + strand, within EX31_RS07705at 24.632 kb on + strand, within EX31_RS07705at 24.632 kb on + strand, within EX31_RS07705at 24.632 kb on + strand, within EX31_RS07705at 24.632 kb on + strand, within EX31_RS07705at 24.633 kb on - strand, within EX31_RS07705at 24.633 kb on - strand, within EX31_RS07705at 24.697 kb on + strand, within EX31_RS07705at 24.756 kb on + strand, within EX31_RS07705

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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22,441 - EX31_RS07695 0.42 +0.0
22,446 + EX31_RS07695 0.42 +0.5
22,451 + EX31_RS07695 0.43 +0.8
22,451 + EX31_RS07695 0.43 -0.2
22,451 + EX31_RS07695 0.43 +2.1
22,451 + EX31_RS07695 0.43 +1.3
22,451 + EX31_RS07695 0.43 -2.4
22,451 + EX31_RS07695 0.43 +1.1
22,451 + EX31_RS07695 0.43 -0.7
22,451 + EX31_RS07695 0.43 +1.3
22,451 + EX31_RS07695 0.43 +0.5
22,451 + EX31_RS07695 0.43 +0.5
22,451 + EX31_RS07695 0.43 +0.9
22,452 - EX31_RS07695 0.43 +1.0
22,452 - EX31_RS07695 0.43 +0.3
22,452 - EX31_RS07695 0.43 -1.8
22,452 - EX31_RS07695 0.43 +1.9
22,452 - EX31_RS07695 0.43 +0.0
22,452 - EX31_RS07695 0.43 -0.6
22,452 - EX31_RS07695 0.43 +0.1
22,452 - EX31_RS07695 0.43 +0.6
22,471 - EX31_RS07695 0.44 +0.2
22,554 + EX31_RS07695 0.49 -0.5
22,608 - EX31_RS07695 0.52 -0.7
22,665 - EX31_RS07695 0.56 -2.8
22,680 + EX31_RS07695 0.57 -1.5
22,681 - EX31_RS07695 0.57 -0.4
22,681 - EX31_RS07695 0.57 -0.1
22,681 - EX31_RS07695 0.57 -1.4
22,681 - EX31_RS07695 0.57 +0.4
22,681 - EX31_RS07695 0.57 +0.5
22,704 - EX31_RS07695 0.58 +0.6
22,713 + EX31_RS07695 0.59 +1.8
22,713 + EX31_RS07695 0.59 -1.8
22,714 - EX31_RS07695 0.59 -0.5
22,815 - EX31_RS07695 0.65 -2.1
22,870 - EX31_RS07695 0.68 -0.7
22,889 + EX31_RS07695 0.70 -0.2
22,890 - EX31_RS07695 0.70 +1.0
22,902 + EX31_RS07695 0.70 -0.2
22,902 + EX31_RS07695 0.70 -0.2
22,903 - EX31_RS07695 0.70 +1.2
22,903 - EX31_RS07695 0.70 -2.8
23,070 + EX31_RS07695 0.81 +0.5
23,070 + EX31_RS07695 0.81 +3.3
23,070 + EX31_RS07695 0.81 +0.5
23,150 + EX31_RS07695 0.86 -0.3
23,151 - EX31_RS07695 0.86 +1.0
23,151 - EX31_RS07695 0.86 -2.0
23,151 - EX31_RS07695 0.86 +1.7
23,151 - EX31_RS07695 0.86 +1.0
23,188 + EX31_RS07695 0.88 -0.1
23,247 - -2.4
23,252 + +2.2
23,265 + +0.1
23,283 + -0.7
23,337 + -0.2
23,337 + +0.6
23,359 + -2.7
23,359 + +1.0
23,359 + -0.5
23,360 - +0.0
23,377 + -0.9
23,377 + -0.2
23,378 - -0.7
23,378 - -1.0
23,402 - +0.3
23,431 - EX31_RS07700 0.10 +0.6
23,438 + EX31_RS07700 0.12 -1.2
23,439 - EX31_RS07700 0.12 -0.7
23,457 + EX31_RS07700 0.16 +0.2
23,457 + EX31_RS07700 0.16 -0.9
23,457 + EX31_RS07700 0.16 +1.0
23,457 + EX31_RS07700 0.16 +0.8
23,457 + EX31_RS07700 0.16 -1.3
23,457 + EX31_RS07700 0.16 -0.7
23,458 - EX31_RS07700 0.16 +0.3
23,458 - EX31_RS07700 0.16 +1.6
23,458 - EX31_RS07700 0.16 -2.9
23,458 - EX31_RS07700 0.16 -0.2
23,548 + EX31_RS07700 0.35 +0.8
23,548 + EX31_RS07700 0.35 -0.2
23,549 - EX31_RS07700 0.35 +0.5
23,549 - EX31_RS07700 0.35 -3.0
23,549 - EX31_RS07700 0.35 +0.7
23,649 + EX31_RS07700 0.57 -0.9
23,673 - EX31_RS07700 0.62 -1.1
23,674 + EX31_RS07700 0.62 -2.0
23,697 - EX31_RS07700 0.67 +1.5
23,803 + EX31_RS07700 0.89 +1.1
23,803 + EX31_RS07700 0.89 -1.4
23,803 + EX31_RS07700 0.89 +0.7
23,803 + EX31_RS07700 0.89 +1.1
23,803 + EX31_RS07700 0.89 -0.7
23,803 + EX31_RS07700 0.89 +0.3
23,803 + EX31_RS07700 0.89 +0.4
23,803 + EX31_RS07700 0.89 -3.0
23,803 + EX31_RS07700 0.89 -0.6
23,804 - EX31_RS07700 0.90 +0.1
23,804 - EX31_RS07700 0.90 +0.5
23,804 - EX31_RS07700 0.90 -2.7
23,804 - EX31_RS07700 0.90 -1.7
23,804 - EX31_RS07700 0.90 -0.9
23,804 - EX31_RS07700 0.90 -0.8
23,804 - EX31_RS07700 0.90 -3.1
23,804 - EX31_RS07700 0.90 +0.2
23,804 - EX31_RS07700 0.90 -1.0
23,804 - EX31_RS07700 0.90 -1.4
23,804 - EX31_RS07700 0.90 +1.5
23,805 + EX31_RS07700 0.90 +0.2
23,805 + EX31_RS07700 0.90 +0.1
23,805 + EX31_RS07700 0.90 -0.8
23,805 + EX31_RS07700 0.90 -0.3
23,805 + EX31_RS07700 0.90 -0.7
23,805 + EX31_RS07700 0.90 -0.1
23,805 + EX31_RS07700 0.90 -1.5
23,805 + EX31_RS07700 0.90 -0.1
23,805 + EX31_RS07700 0.90 -1.7
23,805 + EX31_RS07700 0.90 -0.5
23,805 + EX31_RS07700 0.90 +0.0
23,805 + EX31_RS07700 0.90 +2.1
23,805 + EX31_RS07700 0.90 +0.9
23,806 - +0.3
23,806 - -0.4
23,806 - -0.0
23,806 - -1.4
23,806 - +0.7
23,806 - +0.5
23,806 - -0.8
23,806 - -1.0
23,806 - -0.6
23,806 - +1.7
23,806 - +0.8
23,806 - +1.8
23,806 - -2.7
23,807 + +2.0
23,807 + -1.2
23,807 + -0.3
23,807 + +0.3
23,807 + +1.9
23,807 + +0.0
23,807 + -2.7
23,807 + +0.5
23,807 + -0.6
23,807 + -0.7
23,807 + -1.5
23,808 - +2.0
23,808 - +1.1
23,808 - +1.1
23,808 - -0.5
23,808 - -0.2
23,808 - +2.1
23,808 - +0.3
23,808 - -0.5
23,808 - -0.4
23,860 + +0.8
23,860 + +0.5
23,860 + +1.9
23,861 - +0.3
23,923 + +1.6
23,964 + +0.2
23,964 + +0.0
23,964 + +1.0
23,965 - EX31_RS07705 0.10 -2.3
24,063 + EX31_RS07705 0.19 +0.1
24,063 + EX31_RS07705 0.19 +0.4
24,063 + EX31_RS07705 0.19 +1.3
24,064 - EX31_RS07705 0.19 -0.4
24,064 - EX31_RS07705 0.19 +1.0
24,064 - EX31_RS07705 0.19 +2.2
24,064 - EX31_RS07705 0.19 -0.3
24,064 - EX31_RS07705 0.19 +1.5
24,098 + EX31_RS07705 0.22 +1.3
24,098 + EX31_RS07705 0.22 -1.9
24,098 + EX31_RS07705 0.22 +1.6
24,099 - EX31_RS07705 0.22 -0.1
24,099 - EX31_RS07705 0.22 -0.8
24,111 - EX31_RS07705 0.23 +1.6
24,125 - EX31_RS07705 0.25 +1.3
24,156 + EX31_RS07705 0.27 -0.2
24,156 + EX31_RS07705 0.27 +0.4
24,156 + EX31_RS07705 0.27 +0.8
24,156 + EX31_RS07705 0.27 -1.7
24,156 + EX31_RS07705 0.27 +0.8
24,156 + EX31_RS07705 0.27 -0.2
24,157 - EX31_RS07705 0.27 +0.3
24,218 + EX31_RS07705 0.33 +0.9
24,219 - EX31_RS07705 0.33 -1.8
24,228 - EX31_RS07705 0.34 -0.8
24,273 + EX31_RS07705 0.38 +1.5
24,311 - EX31_RS07705 0.41 -1.0
24,323 - EX31_RS07705 0.43 +0.2
24,350 + EX31_RS07705 0.45 -1.8
24,377 + EX31_RS07705 0.47 -1.3
24,378 - EX31_RS07705 0.48 +2.3
24,378 - EX31_RS07705 0.48 -0.5
24,391 - EX31_RS07705 0.49 +0.1
24,503 + EX31_RS07705 0.59 +1.3
24,504 - EX31_RS07705 0.59 -0.4
24,504 - EX31_RS07705 0.59 +1.2
24,527 + EX31_RS07705 0.61 +1.3
24,527 + EX31_RS07705 0.61 -0.7
24,527 + EX31_RS07705 0.61 +0.1
24,527 + EX31_RS07705 0.61 -3.0
24,527 + EX31_RS07705 0.61 +0.3
24,527 + EX31_RS07705 0.61 -3.4
24,527 + EX31_RS07705 0.61 +0.1
24,527 + EX31_RS07705 0.61 -2.7
24,528 - EX31_RS07705 0.61 +0.5
24,632 + EX31_RS07705 0.71 +1.7
24,632 + EX31_RS07705 0.71 -1.2
24,632 + EX31_RS07705 0.71 -2.0
24,632 + EX31_RS07705 0.71 +0.5
24,632 + EX31_RS07705 0.71 -0.1
24,633 - EX31_RS07705 0.71 -0.2
24,633 - EX31_RS07705 0.71 -0.9
24,697 + EX31_RS07705 0.76 +0.9
24,756 + EX31_RS07705 0.82 -0.2

Or see this region's nucleotide sequence