Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07430 and EX31_RS07435 are separated by 3 nucleotides EX31_RS07435 and EX31_RS07440 overlap by 17 nucleotides EX31_RS07440 and EX31_RS07445 are separated by 3 nucleotides EX31_RS07445 and EX31_RS07450 overlap by 1 nucleotides
EX31_RS07430: EX31_RS07430 - transporter substrate-binding domain-containing protein, at 299,915 to 300,751
_RS07430
EX31_RS07435: EX31_RS07435 - urea carboxylase-associated family protein, at 300,755 to 301,384
_RS07435
EX31_RS07440: EX31_RS07440 - urea carboxylase-associated family protein, at 301,368 to 302,015
_RS07440
EX31_RS07445: EX31_RS07445 - amino acid ABC transporter permease, at 302,019 to 302,672
_RS07445
EX31_RS07450: EX31_RS07450 - amino acid ABC transporter permease, at 302,672 to 303,337
_RS07450
Position (kb) 301
302
303 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 300.488 kb on - strand, within EX31_RS07430 at 300.488 kb on - strand, within EX31_RS07430 at 300.610 kb on + strand, within EX31_RS07430 at 300.611 kb on - strand, within EX31_RS07430 at 300.649 kb on + strand, within EX31_RS07430 at 300.750 kb on - strand at 300.750 kb on - strand at 300.754 kb on + strand at 300.754 kb on + strand at 300.754 kb on + strand at 300.754 kb on + strand at 300.754 kb on + strand at 300.754 kb on + strand at 300.755 kb on - strand at 300.755 kb on - strand at 300.755 kb on - strand at 300.823 kb on + strand, within EX31_RS07435 at 300.823 kb on + strand, within EX31_RS07435 at 300.914 kb on - strand, within EX31_RS07435 at 301.012 kb on + strand, within EX31_RS07435 at 301.133 kb on + strand, within EX31_RS07435 at 301.133 kb on + strand, within EX31_RS07435 at 301.133 kb on + strand, within EX31_RS07435 at 301.220 kb on - strand, within EX31_RS07435 at 301.234 kb on + strand, within EX31_RS07435 at 301.234 kb on + strand, within EX31_RS07435 at 301.234 kb on + strand, within EX31_RS07435 at 301.234 kb on + strand, within EX31_RS07435 at 301.433 kb on + strand, within EX31_RS07440 at 301.434 kb on - strand, within EX31_RS07440 at 301.577 kb on - strand, within EX31_RS07440 at 301.590 kb on + strand, within EX31_RS07440 at 301.664 kb on - strand, within EX31_RS07440 at 301.886 kb on + strand, within EX31_RS07440 at 301.955 kb on + strand at 301.955 kb on + strand at 302.094 kb on - strand, within EX31_RS07445 at 302.144 kb on + strand, within EX31_RS07445 at 302.153 kb on - strand, within EX31_RS07445 at 302.190 kb on + strand, within EX31_RS07445 at 302.190 kb on + strand, within EX31_RS07445 at 302.323 kb on - strand, within EX31_RS07445 at 302.346 kb on - strand, within EX31_RS07445 at 302.421 kb on + strand, within EX31_RS07445 at 302.421 kb on + strand, within EX31_RS07445 at 302.495 kb on + strand, within EX31_RS07445 at 302.535 kb on + strand, within EX31_RS07445 at 302.536 kb on - strand, within EX31_RS07445 at 302.566 kb on - strand, within EX31_RS07445 at 302.876 kb on - strand, within EX31_RS07450 at 302.880 kb on - strand, within EX31_RS07450 at 302.880 kb on - strand, within EX31_RS07450 at 302.921 kb on - strand, within EX31_RS07450 at 302.957 kb on + strand, within EX31_RS07450 at 302.957 kb on + strand, within EX31_RS07450 at 302.957 kb on + strand, within EX31_RS07450 at 302.957 kb on + strand, within EX31_RS07450 at 302.957 kb on + strand, within EX31_RS07450 at 302.957 kb on + strand, within EX31_RS07450 at 302.957 kb on + strand, within EX31_RS07450 at 302.958 kb on - strand, within EX31_RS07450 at 302.958 kb on - strand, within EX31_RS07450 at 302.960 kb on + strand, within EX31_RS07450 at 302.961 kb on - strand, within EX31_RS07450 at 302.969 kb on + strand, within EX31_RS07450 at 302.969 kb on + strand, within EX31_RS07450 at 302.969 kb on + strand, within EX31_RS07450 at 302.969 kb on + strand, within EX31_RS07450 at 302.970 kb on - strand, within EX31_RS07450 at 302.972 kb on - strand, within EX31_RS07450
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 300,488 - EX31_RS07430 0.68 +0.7 300,488 - EX31_RS07430 0.68 +0.5 300,610 + EX31_RS07430 0.83 +1.8 300,611 - EX31_RS07430 0.83 -0.3 300,649 + EX31_RS07430 0.88 +0.1 300,750 - -1.3 300,750 - +3.2 300,754 + +0.1 300,754 + -0.9 300,754 + +1.7 300,754 + +0.7 300,754 + +1.3 300,754 + -0.9 300,755 - +1.3 300,755 - -0.5 300,755 - +3.0 300,823 + EX31_RS07435 0.11 +2.3 300,823 + EX31_RS07435 0.11 +0.7 300,914 - EX31_RS07435 0.25 +1.1 301,012 + EX31_RS07435 0.41 +0.3 301,133 + EX31_RS07435 0.60 +2.0 301,133 + EX31_RS07435 0.60 -2.1 301,133 + EX31_RS07435 0.60 +1.9 301,220 - EX31_RS07435 0.74 +0.3 301,234 + EX31_RS07435 0.76 +0.3 301,234 + EX31_RS07435 0.76 +1.4 301,234 + EX31_RS07435 0.76 -0.3 301,234 + EX31_RS07435 0.76 +1.2 301,433 + EX31_RS07440 0.10 -0.3 301,434 - EX31_RS07440 0.10 -0.2 301,577 - EX31_RS07440 0.32 -2.1 301,590 + EX31_RS07440 0.34 +0.7 301,664 - EX31_RS07440 0.46 -1.9 301,886 + EX31_RS07440 0.80 -0.1 301,955 + -0.9 301,955 + -0.9 302,094 - EX31_RS07445 0.11 +1.3 302,144 + EX31_RS07445 0.19 +0.8 302,153 - EX31_RS07445 0.20 -1.3 302,190 + EX31_RS07445 0.26 -0.3 302,190 + EX31_RS07445 0.26 -0.1 302,323 - EX31_RS07445 0.46 +0.5 302,346 - EX31_RS07445 0.50 +1.7 302,421 + EX31_RS07445 0.61 +0.7 302,421 + EX31_RS07445 0.61 -1.3 302,495 + EX31_RS07445 0.73 +0.9 302,535 + EX31_RS07445 0.79 +1.8 302,536 - EX31_RS07445 0.79 +1.7 302,566 - EX31_RS07445 0.84 -0.3 302,876 - EX31_RS07450 0.31 +1.1 302,880 - EX31_RS07450 0.31 +0.4 302,880 - EX31_RS07450 0.31 -0.1 302,921 - EX31_RS07450 0.37 -0.3 302,957 + EX31_RS07450 0.43 +0.7 302,957 + EX31_RS07450 0.43 -2.9 302,957 + EX31_RS07450 0.43 +0.2 302,957 + EX31_RS07450 0.43 -0.9 302,957 + EX31_RS07450 0.43 -0.9 302,957 + EX31_RS07450 0.43 -1.3 302,957 + EX31_RS07450 0.43 -0.3 302,958 - EX31_RS07450 0.43 +0.9 302,958 - EX31_RS07450 0.43 +0.1 302,960 + EX31_RS07450 0.43 -0.9 302,961 - EX31_RS07450 0.43 -0.8 302,969 + EX31_RS07450 0.45 +1.1 302,969 + EX31_RS07450 0.45 +1.7 302,969 + EX31_RS07450 0.45 +1.3 302,969 + EX31_RS07450 0.45 +2.3 302,970 - EX31_RS07450 0.45 +1.0 302,972 - EX31_RS07450 0.45 -0.3
Or see this region's nucleotide sequence