Strain Fitness in Rahnella sp. WP5 around EX31_RS06425

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06420 and EX31_RS06425 are separated by 47 nucleotidesEX31_RS06425 and EX31_RS06430 are separated by 179 nucleotides EX31_RS06420: EX31_RS06420 - MFS transporter, at 49,284 to 50,582 _RS06420 EX31_RS06425: EX31_RS06425 - family 78 glycoside hydrolase catalytic domain, at 50,630 to 53,287 _RS06425 EX31_RS06430: EX31_RS06430 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 53,467 to 56,997 _RS06430 Position (kb) 50 51 52 53 54Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 49.787 kb on + strand, within EX31_RS06420at 49.787 kb on + strand, within EX31_RS06420at 49.787 kb on + strand, within EX31_RS06420at 49.787 kb on + strand, within EX31_RS06420at 49.787 kb on + strand, within EX31_RS06420at 49.788 kb on - strand, within EX31_RS06420at 49.791 kb on + strand, within EX31_RS06420at 49.839 kb on - strand, within EX31_RS06420at 49.935 kb on - strand, within EX31_RS06420at 49.961 kb on + strand, within EX31_RS06420at 49.980 kb on + strand, within EX31_RS06420at 50.028 kb on + strand, within EX31_RS06420at 50.028 kb on + strand, within EX31_RS06420at 50.028 kb on + strand, within EX31_RS06420at 50.028 kb on + strand, within EX31_RS06420at 50.028 kb on + strand, within EX31_RS06420at 50.029 kb on - strand, within EX31_RS06420at 50.029 kb on - strand, within EX31_RS06420at 50.029 kb on - strand, within EX31_RS06420at 50.029 kb on - strand, within EX31_RS06420at 50.029 kb on - strand, within EX31_RS06420at 50.030 kb on + strand, within EX31_RS06420at 50.030 kb on + strand, within EX31_RS06420at 50.030 kb on + strand, within EX31_RS06420at 50.030 kb on + strand, within EX31_RS06420at 50.040 kb on - strand, within EX31_RS06420at 50.124 kb on - strand, within EX31_RS06420at 50.163 kb on - strand, within EX31_RS06420at 50.166 kb on - strand, within EX31_RS06420at 50.210 kb on - strand, within EX31_RS06420at 50.210 kb on - strand, within EX31_RS06420at 50.345 kb on + strand, within EX31_RS06420at 50.346 kb on - strand, within EX31_RS06420at 50.348 kb on + strand, within EX31_RS06420at 50.348 kb on + strand, within EX31_RS06420at 50.510 kb on + strandat 50.510 kb on + strandat 50.531 kb on + strandat 50.534 kb on + strandat 50.567 kb on + strandat 50.580 kb on + strandat 50.580 kb on + strandat 50.588 kb on + strandat 50.610 kb on + strandat 50.610 kb on + strandat 50.621 kb on + strandat 50.621 kb on + strandat 50.629 kb on + strandat 50.651 kb on - strandat 50.701 kb on - strandat 50.847 kb on + strandat 50.871 kb on - strandat 50.890 kb on - strandat 50.896 kb on + strand, within EX31_RS06425at 50.901 kb on - strand, within EX31_RS06425at 50.954 kb on + strand, within EX31_RS06425at 50.954 kb on + strand, within EX31_RS06425at 50.954 kb on + strand, within EX31_RS06425at 51.004 kb on + strand, within EX31_RS06425at 51.079 kb on + strand, within EX31_RS06425at 51.080 kb on - strand, within EX31_RS06425at 51.080 kb on - strand, within EX31_RS06425at 51.105 kb on - strand, within EX31_RS06425at 51.112 kb on - strand, within EX31_RS06425at 51.180 kb on + strand, within EX31_RS06425at 51.180 kb on + strand, within EX31_RS06425at 51.180 kb on + strand, within EX31_RS06425at 51.180 kb on + strand, within EX31_RS06425at 51.181 kb on - strand, within EX31_RS06425at 51.181 kb on - strand, within EX31_RS06425at 51.194 kb on + strand, within EX31_RS06425at 51.195 kb on - strand, within EX31_RS06425at 51.195 kb on - strand, within EX31_RS06425at 51.271 kb on + strand, within EX31_RS06425at 51.296 kb on + strand, within EX31_RS06425at 51.299 kb on + strand, within EX31_RS06425at 51.319 kb on + strand, within EX31_RS06425at 51.342 kb on - strand, within EX31_RS06425at 51.731 kb on + strand, within EX31_RS06425at 51.731 kb on + strand, within EX31_RS06425at 51.770 kb on + strand, within EX31_RS06425at 51.770 kb on + strand, within EX31_RS06425at 51.770 kb on + strand, within EX31_RS06425at 51.771 kb on - strand, within EX31_RS06425at 51.771 kb on - strand, within EX31_RS06425at 51.955 kb on - strand, within EX31_RS06425at 51.955 kb on - strand, within EX31_RS06425at 51.955 kb on - strand, within EX31_RS06425at 51.955 kb on - strand, within EX31_RS06425at 51.964 kb on + strand, within EX31_RS06425at 52.076 kb on + strand, within EX31_RS06425at 52.127 kb on + strand, within EX31_RS06425at 52.274 kb on + strand, within EX31_RS06425at 52.275 kb on - strand, within EX31_RS06425at 52.313 kb on + strand, within EX31_RS06425at 52.314 kb on - strand, within EX31_RS06425at 52.377 kb on - strand, within EX31_RS06425at 52.384 kb on - strand, within EX31_RS06425at 52.384 kb on - strand, within EX31_RS06425at 52.384 kb on - strand, within EX31_RS06425at 52.466 kb on + strand, within EX31_RS06425at 52.470 kb on - strand, within EX31_RS06425at 52.470 kb on - strand, within EX31_RS06425at 52.529 kb on + strand, within EX31_RS06425at 52.538 kb on + strand, within EX31_RS06425at 52.538 kb on + strand, within EX31_RS06425at 52.539 kb on - strand, within EX31_RS06425at 52.643 kb on + strand, within EX31_RS06425at 52.643 kb on + strand, within EX31_RS06425at 52.644 kb on - strand, within EX31_RS06425at 52.787 kb on - strand, within EX31_RS06425at 52.935 kb on - strand, within EX31_RS06425at 53.081 kb on + strandat 53.550 kb on - strandat 53.700 kb on - strandat 53.721 kb on + strandat 53.882 kb on + strand, within EX31_RS06430at 53.882 kb on + strand, within EX31_RS06430at 53.882 kb on + strand, within EX31_RS06430at 53.882 kb on + strand, within EX31_RS06430at 53.882 kb on + strand, within EX31_RS06430at 53.882 kb on + strand, within EX31_RS06430at 53.882 kb on + strand, within EX31_RS06430at 53.883 kb on - strand, within EX31_RS06430at 53.883 kb on - strand, within EX31_RS06430at 53.883 kb on - strand, within EX31_RS06430at 53.894 kb on + strand, within EX31_RS06430at 53.894 kb on + strand, within EX31_RS06430at 53.895 kb on - strand, within EX31_RS06430at 53.895 kb on - strand, within EX31_RS06430at 53.895 kb on - strand, within EX31_RS06430at 54.008 kb on + strand, within EX31_RS06430at 54.056 kb on - strand, within EX31_RS06430at 54.089 kb on + strand, within EX31_RS06430at 54.090 kb on - strand, within EX31_RS06430at 54.276 kb on + strand, within EX31_RS06430at 54.277 kb on - strand, within EX31_RS06430

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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49,787 + EX31_RS06420 0.39 +0.7
49,787 + EX31_RS06420 0.39 +0.7
49,787 + EX31_RS06420 0.39 +1.7
49,787 + EX31_RS06420 0.39 +0.5
49,787 + EX31_RS06420 0.39 -0.3
49,788 - EX31_RS06420 0.39 -0.3
49,791 + EX31_RS06420 0.39 +2.5
49,839 - EX31_RS06420 0.43 -0.3
49,935 - EX31_RS06420 0.50 -0.9
49,961 + EX31_RS06420 0.52 -1.9
49,980 + EX31_RS06420 0.54 -1.1
50,028 + EX31_RS06420 0.57 +0.1
50,028 + EX31_RS06420 0.57 +1.4
50,028 + EX31_RS06420 0.57 +0.1
50,028 + EX31_RS06420 0.57 -0.5
50,028 + EX31_RS06420 0.57 -0.3
50,029 - EX31_RS06420 0.57 +1.0
50,029 - EX31_RS06420 0.57 -1.6
50,029 - EX31_RS06420 0.57 -0.2
50,029 - EX31_RS06420 0.57 +1.7
50,029 - EX31_RS06420 0.57 +0.5
50,030 + EX31_RS06420 0.57 +2.7
50,030 + EX31_RS06420 0.57 -0.1
50,030 + EX31_RS06420 0.57 +0.3
50,030 + EX31_RS06420 0.57 +0.3
50,040 - EX31_RS06420 0.58 -2.3
50,124 - EX31_RS06420 0.65 -0.9
50,163 - EX31_RS06420 0.68 -0.3
50,166 - EX31_RS06420 0.68 +0.2
50,210 - EX31_RS06420 0.71 +1.4
50,210 - EX31_RS06420 0.71 +3.5
50,345 + EX31_RS06420 0.82 -2.1
50,346 - EX31_RS06420 0.82 -2.8
50,348 + EX31_RS06420 0.82 +2.3
50,348 + EX31_RS06420 0.82 -1.3
50,510 + -0.3
50,510 + +0.3
50,531 + -2.3
50,534 + -1.9
50,567 + +0.7
50,580 + +0.7
50,580 + +0.4
50,588 + -0.3
50,610 + -0.1
50,610 + +0.5
50,621 + -1.9
50,621 + +0.7
50,629 + -1.9
50,651 - +1.5
50,701 - -0.9
50,847 + +1.3
50,871 - +0.4
50,890 - +2.1
50,896 + EX31_RS06425 0.10 +2.7
50,901 - EX31_RS06425 0.10 -1.3
50,954 + EX31_RS06425 0.12 +1.1
50,954 + EX31_RS06425 0.12 +0.5
50,954 + EX31_RS06425 0.12 +1.7
51,004 + EX31_RS06425 0.14 +0.7
51,079 + EX31_RS06425 0.17 -1.3
51,080 - EX31_RS06425 0.17 +0.7
51,080 - EX31_RS06425 0.17 +0.7
51,105 - EX31_RS06425 0.18 +2.7
51,112 - EX31_RS06425 0.18 -0.3
51,180 + EX31_RS06425 0.21 -2.3
51,180 + EX31_RS06425 0.21 -0.9
51,180 + EX31_RS06425 0.21 -0.9
51,180 + EX31_RS06425 0.21 +3.4
51,181 - EX31_RS06425 0.21 -0.3
51,181 - EX31_RS06425 0.21 +0.7
51,194 + EX31_RS06425 0.21 -0.9
51,195 - EX31_RS06425 0.21 -0.9
51,195 - EX31_RS06425 0.21 +1.3
51,271 + EX31_RS06425 0.24 -1.6
51,296 + EX31_RS06425 0.25 +1.0
51,299 + EX31_RS06425 0.25 +1.7
51,319 + EX31_RS06425 0.26 +2.1
51,342 - EX31_RS06425 0.27 -1.3
51,731 + EX31_RS06425 0.41 -0.1
51,731 + EX31_RS06425 0.41 -0.3
51,770 + EX31_RS06425 0.43 -0.3
51,770 + EX31_RS06425 0.43 -0.5
51,770 + EX31_RS06425 0.43 +0.3
51,771 - EX31_RS06425 0.43 +0.8
51,771 - EX31_RS06425 0.43 -1.2
51,955 - EX31_RS06425 0.50 +0.5
51,955 - EX31_RS06425 0.50 -0.3
51,955 - EX31_RS06425 0.50 +1.3
51,955 - EX31_RS06425 0.50 +0.7
51,964 + EX31_RS06425 0.50 -0.1
52,076 + EX31_RS06425 0.54 -0.3
52,127 + EX31_RS06425 0.56 +1.4
52,274 + EX31_RS06425 0.62 +0.1
52,275 - EX31_RS06425 0.62 -2.1
52,313 + EX31_RS06425 0.63 +0.3
52,314 - EX31_RS06425 0.63 -0.5
52,377 - EX31_RS06425 0.66 +1.6
52,384 - EX31_RS06425 0.66 +0.5
52,384 - EX31_RS06425 0.66 -1.3
52,384 - EX31_RS06425 0.66 +1.5
52,466 + EX31_RS06425 0.69 +2.7
52,470 - EX31_RS06425 0.69 -1.6
52,470 - EX31_RS06425 0.69 -0.9
52,529 + EX31_RS06425 0.71 -2.1
52,538 + EX31_RS06425 0.72 -1.6
52,538 + EX31_RS06425 0.72 -0.0
52,539 - EX31_RS06425 0.72 -2.3
52,643 + EX31_RS06425 0.76 +0.3
52,643 + EX31_RS06425 0.76 -2.9
52,644 - EX31_RS06425 0.76 -2.5
52,787 - EX31_RS06425 0.81 +0.1
52,935 - EX31_RS06425 0.87 +1.8
53,081 + -1.8
53,550 - -0.7
53,700 - +0.9
53,721 + -1.3
53,882 + EX31_RS06430 0.12 -0.9
53,882 + EX31_RS06430 0.12 +0.4
53,882 + EX31_RS06430 0.12 -1.9
53,882 + EX31_RS06430 0.12 +0.2
53,882 + EX31_RS06430 0.12 -1.3
53,882 + EX31_RS06430 0.12 -1.5
53,882 + EX31_RS06430 0.12 +0.7
53,883 - EX31_RS06430 0.12 +1.1
53,883 - EX31_RS06430 0.12 -1.5
53,883 - EX31_RS06430 0.12 -1.6
53,894 + EX31_RS06430 0.12 +0.9
53,894 + EX31_RS06430 0.12 -0.1
53,895 - EX31_RS06430 0.12 -0.7
53,895 - EX31_RS06430 0.12 -0.9
53,895 - EX31_RS06430 0.12 -0.7
54,008 + EX31_RS06430 0.15 -0.5
54,056 - EX31_RS06430 0.17 -0.1
54,089 + EX31_RS06430 0.18 -0.8
54,090 - EX31_RS06430 0.18 -1.1
54,276 + EX31_RS06430 0.23 +0.7
54,277 - EX31_RS06430 0.23 -1.9

Or see this region's nucleotide sequence