Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06410 and EX31_RS06415 are separated by 252 nucleotides EX31_RS06415 and EX31_RS06420 are separated by 108 nucleotides
EX31_RS06410: EX31_RS06410 - FadR family transcriptional regulator, at 47,346 to 48,056
_RS06410
EX31_RS06415: EX31_RS06415 - helix-turn-helix domain-containing protein, at 48,309 to 49,175
_RS06415
EX31_RS06420: EX31_RS06420 - MFS transporter, at 49,284 to 50,582
_RS06420
Position (kb) 48
49
50 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 47.309 kb on - strand at 47.309 kb on - strand at 47.309 kb on - strand at 47.309 kb on - strand at 47.309 kb on - strand at 47.309 kb on - strand at 47.654 kb on + strand, within EX31_RS06410 at 47.658 kb on + strand, within EX31_RS06410 at 47.659 kb on - strand, within EX31_RS06410 at 47.954 kb on + strand, within EX31_RS06410 at 47.954 kb on + strand, within EX31_RS06410 at 47.960 kb on + strand, within EX31_RS06410 at 47.960 kb on + strand, within EX31_RS06410 at 47.960 kb on + strand, within EX31_RS06410 at 47.961 kb on - strand, within EX31_RS06410 at 47.965 kb on - strand, within EX31_RS06410 at 48.032 kb on + strand at 48.054 kb on + strand at 48.054 kb on + strand at 48.054 kb on + strand at 48.055 kb on - strand at 48.118 kb on - strand at 48.201 kb on - strand at 48.205 kb on - strand at 48.452 kb on + strand, within EX31_RS06415 at 48.732 kb on + strand, within EX31_RS06415 at 49.304 kb on + strand at 49.346 kb on + strand at 49.389 kb on - strand at 49.392 kb on + strand at 49.392 kb on + strand at 49.433 kb on - strand, within EX31_RS06420 at 49.444 kb on + strand, within EX31_RS06420 at 49.619 kb on + strand, within EX31_RS06420 at 49.787 kb on + strand, within EX31_RS06420 at 49.787 kb on + strand, within EX31_RS06420 at 49.787 kb on + strand, within EX31_RS06420 at 49.787 kb on + strand, within EX31_RS06420 at 49.787 kb on + strand, within EX31_RS06420 at 49.788 kb on - strand, within EX31_RS06420 at 49.791 kb on + strand, within EX31_RS06420 at 49.839 kb on - strand, within EX31_RS06420 at 49.935 kb on - strand, within EX31_RS06420 at 49.961 kb on + strand, within EX31_RS06420 at 49.980 kb on + strand, within EX31_RS06420 at 50.028 kb on + strand, within EX31_RS06420 at 50.028 kb on + strand, within EX31_RS06420 at 50.028 kb on + strand, within EX31_RS06420 at 50.028 kb on + strand, within EX31_RS06420 at 50.028 kb on + strand, within EX31_RS06420 at 50.029 kb on - strand, within EX31_RS06420 at 50.029 kb on - strand, within EX31_RS06420 at 50.029 kb on - strand, within EX31_RS06420 at 50.029 kb on - strand, within EX31_RS06420 at 50.029 kb on - strand, within EX31_RS06420 at 50.030 kb on + strand, within EX31_RS06420 at 50.030 kb on + strand, within EX31_RS06420 at 50.030 kb on + strand, within EX31_RS06420 at 50.030 kb on + strand, within EX31_RS06420 at 50.040 kb on - strand, within EX31_RS06420 at 50.124 kb on - strand, within EX31_RS06420 at 50.163 kb on - strand, within EX31_RS06420 at 50.166 kb on - strand, within EX31_RS06420
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 47,309 - -0.1 47,309 - +1.1 47,309 - +1.2 47,309 - +0.0 47,309 - +1.8 47,309 - +0.1 47,654 + EX31_RS06410 0.43 +1.7 47,658 + EX31_RS06410 0.44 +2.0 47,659 - EX31_RS06410 0.44 -0.9 47,954 + EX31_RS06410 0.86 -0.9 47,954 + EX31_RS06410 0.86 +0.9 47,960 + EX31_RS06410 0.86 -0.1 47,960 + EX31_RS06410 0.86 +1.5 47,960 + EX31_RS06410 0.86 -0.3 47,961 - EX31_RS06410 0.86 -3.1 47,965 - EX31_RS06410 0.87 -0.6 48,032 + -0.3 48,054 + -0.9 48,054 + +0.5 48,054 + -2.3 48,055 - -0.9 48,118 - +0.4 48,201 - +0.3 48,205 - -1.6 48,452 + EX31_RS06415 0.16 +0.4 48,732 + EX31_RS06415 0.49 -1.3 49,304 + -0.0 49,346 + +0.7 49,389 - -0.3 49,392 + -1.3 49,392 + +0.1 49,433 - EX31_RS06420 0.11 -1.6 49,444 + EX31_RS06420 0.12 -1.6 49,619 + EX31_RS06420 0.26 -1.9 49,787 + EX31_RS06420 0.39 +0.7 49,787 + EX31_RS06420 0.39 +0.7 49,787 + EX31_RS06420 0.39 +1.7 49,787 + EX31_RS06420 0.39 +0.5 49,787 + EX31_RS06420 0.39 -0.3 49,788 - EX31_RS06420 0.39 -0.3 49,791 + EX31_RS06420 0.39 +2.5 49,839 - EX31_RS06420 0.43 -0.3 49,935 - EX31_RS06420 0.50 -0.9 49,961 + EX31_RS06420 0.52 -1.9 49,980 + EX31_RS06420 0.54 -1.1 50,028 + EX31_RS06420 0.57 +0.1 50,028 + EX31_RS06420 0.57 +1.4 50,028 + EX31_RS06420 0.57 +0.1 50,028 + EX31_RS06420 0.57 -0.5 50,028 + EX31_RS06420 0.57 -0.3 50,029 - EX31_RS06420 0.57 +1.0 50,029 - EX31_RS06420 0.57 -1.6 50,029 - EX31_RS06420 0.57 -0.2 50,029 - EX31_RS06420 0.57 +1.7 50,029 - EX31_RS06420 0.57 +0.5 50,030 + EX31_RS06420 0.57 +2.7 50,030 + EX31_RS06420 0.57 -0.1 50,030 + EX31_RS06420 0.57 +0.3 50,030 + EX31_RS06420 0.57 +0.3 50,040 - EX31_RS06420 0.58 -2.3 50,124 - EX31_RS06420 0.65 -0.9 50,163 - EX31_RS06420 0.68 -0.3 50,166 - EX31_RS06420 0.68 +0.2
Or see this region's nucleotide sequence