Strain Fitness in Rahnella sp. WP5 around EX31_RS05230

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS05225 and EX31_RS05230 are separated by 233 nucleotidesEX31_RS05230 and EX31_RS05235 overlap by 8 nucleotidesEX31_RS05235 and EX31_RS05240 are separated by 206 nucleotides EX31_RS05225: EX31_RS05225 - MarR family transcriptional regulator, at 184,011 to 184,943 _RS05225 EX31_RS05230: EX31_RS05230 - tagatose-bisphosphate aldolase, at 185,177 to 186,112 _RS05230 EX31_RS05235: EX31_RS05235 - ATPase AAA, at 186,105 to 186,701 _RS05235 EX31_RS05240: EX31_RS05240 - PTS sugar transporter subunit IIA, at 186,908 to 187,351 _RS05240 Position (kb) 185 186 187Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 184.210 kb on - strand, within EX31_RS05225at 184.210 kb on - strand, within EX31_RS05225at 184.231 kb on + strand, within EX31_RS05225at 184.231 kb on + strand, within EX31_RS05225at 184.231 kb on + strand, within EX31_RS05225at 184.232 kb on - strand, within EX31_RS05225at 184.313 kb on + strand, within EX31_RS05225at 184.426 kb on + strand, within EX31_RS05225at 184.444 kb on + strand, within EX31_RS05225at 184.445 kb on - strand, within EX31_RS05225at 184.630 kb on - strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.708 kb on + strand, within EX31_RS05225at 184.709 kb on - strand, within EX31_RS05225at 184.709 kb on - strand, within EX31_RS05225at 184.709 kb on - strand, within EX31_RS05225at 184.709 kb on - strand, within EX31_RS05225at 184.709 kb on - strand, within EX31_RS05225at 184.709 kb on - strand, within EX31_RS05225at 184.709 kb on - strand, within EX31_RS05225at 184.709 kb on - strand, within EX31_RS05225at 184.709 kb on - strand, within EX31_RS05225at 184.709 kb on - strand, within EX31_RS05225at 184.709 kb on - strand, within EX31_RS05225at 184.709 kb on - strand, within EX31_RS05225at 184.709 kb on - strand, within EX31_RS05225at 184.709 kb on - strand, within EX31_RS05225at 184.709 kb on - strand, within EX31_RS05225at 184.709 kb on - strand, within EX31_RS05225at 184.709 kb on - strand, within EX31_RS05225at 184.709 kb on - strand, within EX31_RS05225at 184.709 kb on - strand, within EX31_RS05225at 184.709 kb on - strand, within EX31_RS05225at 184.709 kb on - strand, within EX31_RS05225at 184.734 kb on + strand, within EX31_RS05225at 184.735 kb on - strand, within EX31_RS05225at 184.735 kb on - strand, within EX31_RS05225at 184.767 kb on + strand, within EX31_RS05225at 184.811 kb on + strand, within EX31_RS05225at 184.877 kb on + strandat 184.877 kb on + strandat 184.877 kb on + strandat 184.877 kb on + strandat 184.878 kb on - strandat 184.878 kb on - strandat 184.878 kb on - strandat 184.878 kb on - strandat 184.878 kb on - strandat 184.878 kb on - strandat 184.889 kb on - strandat 184.889 kb on - strandat 184.984 kb on + strandat 185.063 kb on + strandat 185.063 kb on + strandat 185.063 kb on + strandat 185.063 kb on + strandat 185.064 kb on - strandat 185.064 kb on - strandat 185.192 kb on - strandat 185.203 kb on - strandat 185.203 kb on - strandat 185.210 kb on + strandat 185.210 kb on + strandat 185.211 kb on - strandat 185.211 kb on - strandat 185.211 kb on - strandat 185.342 kb on - strand, within EX31_RS05230at 185.360 kb on + strand, within EX31_RS05230at 185.360 kb on + strand, within EX31_RS05230at 185.360 kb on + strand, within EX31_RS05230at 185.361 kb on - strand, within EX31_RS05230at 185.361 kb on - strand, within EX31_RS05230at 185.582 kb on + strand, within EX31_RS05230at 185.582 kb on + strand, within EX31_RS05230at 185.582 kb on + strand, within EX31_RS05230at 185.582 kb on + strand, within EX31_RS05230at 185.582 kb on + strand, within EX31_RS05230at 185.582 kb on + strand, within EX31_RS05230at 185.582 kb on + strand, within EX31_RS05230at 185.582 kb on + strand, within EX31_RS05230at 185.583 kb on - strand, within EX31_RS05230at 185.583 kb on - strand, within EX31_RS05230at 185.583 kb on - strand, within EX31_RS05230at 185.583 kb on - strand, within EX31_RS05230at 185.583 kb on - strand, within EX31_RS05230at 185.583 kb on - strand, within EX31_RS05230at 185.583 kb on - strand, within EX31_RS05230at 185.583 kb on - strand, within EX31_RS05230at 185.618 kb on - strand, within EX31_RS05230at 185.618 kb on - strand, within EX31_RS05230at 185.626 kb on + strand, within EX31_RS05230at 185.627 kb on - strand, within EX31_RS05230at 185.693 kb on + strand, within EX31_RS05230at 185.693 kb on + strand, within EX31_RS05230at 185.693 kb on + strand, within EX31_RS05230at 185.693 kb on + strand, within EX31_RS05230at 185.693 kb on + strand, within EX31_RS05230at 185.694 kb on - strand, within EX31_RS05230at 185.694 kb on - strand, within EX31_RS05230at 185.694 kb on - strand, within EX31_RS05230at 185.695 kb on + strand, within EX31_RS05230at 185.695 kb on + strand, within EX31_RS05230at 185.723 kb on + strand, within EX31_RS05230at 185.723 kb on + strand, within EX31_RS05230at 185.723 kb on + strand, within EX31_RS05230at 185.724 kb on - strand, within EX31_RS05230at 185.724 kb on - strand, within EX31_RS05230at 185.724 kb on - strand, within EX31_RS05230at 185.725 kb on + strand, within EX31_RS05230at 185.750 kb on + strand, within EX31_RS05230at 185.750 kb on + strand, within EX31_RS05230at 185.750 kb on + strand, within EX31_RS05230at 185.751 kb on - strand, within EX31_RS05230at 185.751 kb on - strand, within EX31_RS05230at 185.869 kb on - strand, within EX31_RS05230at 185.869 kb on - strand, within EX31_RS05230at 186.062 kb on + strandat 186.063 kb on - strandat 186.186 kb on - strand, within EX31_RS05235at 186.216 kb on + strand, within EX31_RS05235at 186.216 kb on + strand, within EX31_RS05235at 186.217 kb on - strand, within EX31_RS05235at 186.274 kb on + strand, within EX31_RS05235at 186.296 kb on + strand, within EX31_RS05235at 186.296 kb on + strand, within EX31_RS05235at 186.305 kb on - strand, within EX31_RS05235at 186.305 kb on - strand, within EX31_RS05235at 186.322 kb on - strand, within EX31_RS05235at 186.329 kb on + strand, within EX31_RS05235at 186.330 kb on - strand, within EX31_RS05235at 186.330 kb on - strand, within EX31_RS05235at 186.330 kb on - strand, within EX31_RS05235at 186.371 kb on + strand, within EX31_RS05235at 186.371 kb on + strand, within EX31_RS05235at 186.371 kb on + strand, within EX31_RS05235at 186.371 kb on + strand, within EX31_RS05235at 186.371 kb on + strand, within EX31_RS05235at 186.371 kb on + strand, within EX31_RS05235at 186.371 kb on + strand, within EX31_RS05235at 186.372 kb on - strand, within EX31_RS05235at 186.372 kb on - strand, within EX31_RS05235at 186.372 kb on - strand, within EX31_RS05235at 186.409 kb on + strand, within EX31_RS05235at 186.409 kb on + strand, within EX31_RS05235at 186.409 kb on + strand, within EX31_RS05235at 186.409 kb on + strand, within EX31_RS05235at 186.409 kb on + strand, within EX31_RS05235at 186.410 kb on - strand, within EX31_RS05235at 186.410 kb on - strand, within EX31_RS05235at 186.410 kb on - strand, within EX31_RS05235at 186.421 kb on - strand, within EX31_RS05235at 186.439 kb on + strand, within EX31_RS05235at 186.521 kb on - strand, within EX31_RS05235at 186.545 kb on + strand, within EX31_RS05235at 186.766 kb on + strandat 186.873 kb on - strandat 186.873 kb on - strandat 186.908 kb on - strandat 187.039 kb on + strand, within EX31_RS05240at 187.040 kb on - strand, within EX31_RS05240at 187.040 kb on - strand, within EX31_RS05240at 187.041 kb on + strand, within EX31_RS05240at 187.041 kb on + strand, within EX31_RS05240at 187.041 kb on + strand, within EX31_RS05240at 187.041 kb on + strand, within EX31_RS05240at 187.042 kb on - strand, within EX31_RS05240at 187.042 kb on - strand, within EX31_RS05240at 187.042 kb on - strand, within EX31_RS05240at 187.043 kb on + strand, within EX31_RS05240at 187.043 kb on + strand, within EX31_RS05240at 187.043 kb on + strand, within EX31_RS05240at 187.043 kb on + strand, within EX31_RS05240at 187.043 kb on + strand, within EX31_RS05240at 187.044 kb on - strand, within EX31_RS05240at 187.071 kb on - strand, within EX31_RS05240at 187.071 kb on - strand, within EX31_RS05240at 187.073 kb on + strand, within EX31_RS05240at 187.091 kb on - strand, within EX31_RS05240

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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184,210 - EX31_RS05225 0.21 +0.2
184,210 - EX31_RS05225 0.21 -2.5
184,231 + EX31_RS05225 0.24 -0.0
184,231 + EX31_RS05225 0.24 +2.1
184,231 + EX31_RS05225 0.24 -2.3
184,232 - EX31_RS05225 0.24 -0.8
184,313 + EX31_RS05225 0.32 +0.7
184,426 + EX31_RS05225 0.44 +1.5
184,444 + EX31_RS05225 0.46 +0.6
184,445 - EX31_RS05225 0.47 +0.4
184,630 - EX31_RS05225 0.66 +1.6
184,708 + EX31_RS05225 0.75 -0.1
184,708 + EX31_RS05225 0.75 -1.2
184,708 + EX31_RS05225 0.75 +0.0
184,708 + EX31_RS05225 0.75 +0.3
184,708 + EX31_RS05225 0.75 +0.2
184,708 + EX31_RS05225 0.75 +0.4
184,708 + EX31_RS05225 0.75 +1.1
184,708 + EX31_RS05225 0.75 +0.1
184,708 + EX31_RS05225 0.75 +0.2
184,708 + EX31_RS05225 0.75 +0.2
184,708 + EX31_RS05225 0.75 -0.4
184,708 + EX31_RS05225 0.75 -0.6
184,708 + EX31_RS05225 0.75 -0.5
184,708 + EX31_RS05225 0.75 +0.2
184,708 + EX31_RS05225 0.75 -0.2
184,708 + EX31_RS05225 0.75 -0.2
184,708 + EX31_RS05225 0.75 -0.2
184,708 + EX31_RS05225 0.75 -1.7
184,708 + EX31_RS05225 0.75 +0.6
184,708 + EX31_RS05225 0.75 +1.2
184,708 + EX31_RS05225 0.75 -1.9
184,708 + EX31_RS05225 0.75 +1.8
184,708 + EX31_RS05225 0.75 -1.6
184,709 - EX31_RS05225 0.75 +0.1
184,709 - EX31_RS05225 0.75 +1.5
184,709 - EX31_RS05225 0.75 +1.0
184,709 - EX31_RS05225 0.75 -2.0
184,709 - EX31_RS05225 0.75 +1.5
184,709 - EX31_RS05225 0.75 -0.3
184,709 - EX31_RS05225 0.75 +2.1
184,709 - EX31_RS05225 0.75 +0.7
184,709 - EX31_RS05225 0.75 +0.7
184,709 - EX31_RS05225 0.75 -0.2
184,709 - EX31_RS05225 0.75 +2.2
184,709 - EX31_RS05225 0.75 +0.1
184,709 - EX31_RS05225 0.75 +1.2
184,709 - EX31_RS05225 0.75 +1.9
184,709 - EX31_RS05225 0.75 -0.1
184,709 - EX31_RS05225 0.75 -0.3
184,709 - EX31_RS05225 0.75 +1.0
184,709 - EX31_RS05225 0.75 -0.4
184,709 - EX31_RS05225 0.75 +1.1
184,709 - EX31_RS05225 0.75 +0.1
184,709 - EX31_RS05225 0.75 +0.5
184,734 + EX31_RS05225 0.77 -0.7
184,735 - EX31_RS05225 0.78 +1.9
184,735 - EX31_RS05225 0.78 +0.3
184,767 + EX31_RS05225 0.81 -0.5
184,811 + EX31_RS05225 0.86 +1.1
184,877 + +0.2
184,877 + -1.0
184,877 + +0.1
184,877 + -0.8
184,878 - +0.3
184,878 - -0.2
184,878 - -1.1
184,878 - +0.5
184,878 - -0.8
184,878 - +1.6
184,889 - +0.5
184,889 - +1.1
184,984 + -0.4
185,063 + -0.3
185,063 + +0.1
185,063 + -0.0
185,063 + -0.6
185,064 - -1.2
185,064 - -1.0
185,192 - +0.2
185,203 - +0.3
185,203 - +1.6
185,210 + +1.6
185,210 + +0.5
185,211 - +0.7
185,211 - +0.7
185,211 - +0.4
185,342 - EX31_RS05230 0.18 -0.8
185,360 + EX31_RS05230 0.20 -0.7
185,360 + EX31_RS05230 0.20 -0.1
185,360 + EX31_RS05230 0.20 +1.4
185,361 - EX31_RS05230 0.20 +1.2
185,361 - EX31_RS05230 0.20 -0.6
185,582 + EX31_RS05230 0.43 +0.1
185,582 + EX31_RS05230 0.43 -0.0
185,582 + EX31_RS05230 0.43 -2.2
185,582 + EX31_RS05230 0.43 +0.3
185,582 + EX31_RS05230 0.43 +1.3
185,582 + EX31_RS05230 0.43 +1.0
185,582 + EX31_RS05230 0.43 -1.1
185,582 + EX31_RS05230 0.43 +0.3
185,583 - EX31_RS05230 0.43 +1.7
185,583 - EX31_RS05230 0.43 -0.2
185,583 - EX31_RS05230 0.43 +0.0
185,583 - EX31_RS05230 0.43 -0.0
185,583 - EX31_RS05230 0.43 +0.3
185,583 - EX31_RS05230 0.43 -0.2
185,583 - EX31_RS05230 0.43 +1.6
185,583 - EX31_RS05230 0.43 -0.6
185,618 - EX31_RS05230 0.47 +0.2
185,618 - EX31_RS05230 0.47 +0.2
185,626 + EX31_RS05230 0.48 -0.7
185,627 - EX31_RS05230 0.48 -1.0
185,693 + EX31_RS05230 0.55 +1.0
185,693 + EX31_RS05230 0.55 -0.4
185,693 + EX31_RS05230 0.55 -0.4
185,693 + EX31_RS05230 0.55 +0.1
185,693 + EX31_RS05230 0.55 +0.3
185,694 - EX31_RS05230 0.55 -2.7
185,694 - EX31_RS05230 0.55 -1.1
185,694 - EX31_RS05230 0.55 -0.4
185,695 + EX31_RS05230 0.55 +1.6
185,695 + EX31_RS05230 0.55 -0.1
185,723 + EX31_RS05230 0.58 -1.6
185,723 + EX31_RS05230 0.58 +0.1
185,723 + EX31_RS05230 0.58 +1.6
185,724 - EX31_RS05230 0.58 +1.1
185,724 - EX31_RS05230 0.58 +0.2
185,724 - EX31_RS05230 0.58 +0.2
185,725 + EX31_RS05230 0.59 -1.9
185,750 + EX31_RS05230 0.61 +0.2
185,750 + EX31_RS05230 0.61 +1.1
185,750 + EX31_RS05230 0.61 +0.6
185,751 - EX31_RS05230 0.61 +0.3
185,751 - EX31_RS05230 0.61 -0.7
185,869 - EX31_RS05230 0.74 +0.8
185,869 - EX31_RS05230 0.74 +0.9
186,062 + +0.4
186,063 - +0.9
186,186 - EX31_RS05235 0.14 -1.1
186,216 + EX31_RS05235 0.19 +1.6
186,216 + EX31_RS05235 0.19 +1.6
186,217 - EX31_RS05235 0.19 +1.1
186,274 + EX31_RS05235 0.28 -0.0
186,296 + EX31_RS05235 0.32 +1.2
186,296 + EX31_RS05235 0.32 -0.1
186,305 - EX31_RS05235 0.34 +0.7
186,305 - EX31_RS05235 0.34 -1.6
186,322 - EX31_RS05235 0.36 -0.7
186,329 + EX31_RS05235 0.38 -0.3
186,330 - EX31_RS05235 0.38 -1.4
186,330 - EX31_RS05235 0.38 +0.2
186,330 - EX31_RS05235 0.38 +0.3
186,371 + EX31_RS05235 0.45 +0.1
186,371 + EX31_RS05235 0.45 +0.6
186,371 + EX31_RS05235 0.45 +1.3
186,371 + EX31_RS05235 0.45 -0.2
186,371 + EX31_RS05235 0.45 +1.6
186,371 + EX31_RS05235 0.45 -1.0
186,371 + EX31_RS05235 0.45 +0.8
186,372 - EX31_RS05235 0.45 +0.4
186,372 - EX31_RS05235 0.45 +0.6
186,372 - EX31_RS05235 0.45 +0.1
186,409 + EX31_RS05235 0.51 +0.6
186,409 + EX31_RS05235 0.51 -0.9
186,409 + EX31_RS05235 0.51 -0.3
186,409 + EX31_RS05235 0.51 +2.0
186,409 + EX31_RS05235 0.51 +0.9
186,410 - EX31_RS05235 0.51 +1.0
186,410 - EX31_RS05235 0.51 -0.2
186,410 - EX31_RS05235 0.51 +0.3
186,421 - EX31_RS05235 0.53 -1.1
186,439 + EX31_RS05235 0.56 +0.5
186,521 - EX31_RS05235 0.70 -0.0
186,545 + EX31_RS05235 0.74 +0.9
186,766 + -0.8
186,873 - +0.8
186,873 - -1.1
186,908 - +0.6
187,039 + EX31_RS05240 0.30 +0.3
187,040 - EX31_RS05240 0.30 -2.5
187,040 - EX31_RS05240 0.30 +1.8
187,041 + EX31_RS05240 0.30 -0.0
187,041 + EX31_RS05240 0.30 -0.7
187,041 + EX31_RS05240 0.30 -0.2
187,041 + EX31_RS05240 0.30 -2.8
187,042 - EX31_RS05240 0.30 +1.1
187,042 - EX31_RS05240 0.30 +1.1
187,042 - EX31_RS05240 0.30 +0.4
187,043 + EX31_RS05240 0.30 -0.1
187,043 + EX31_RS05240 0.30 -1.9
187,043 + EX31_RS05240 0.30 -0.2
187,043 + EX31_RS05240 0.30 +0.2
187,043 + EX31_RS05240 0.30 -0.1
187,044 - EX31_RS05240 0.31 +0.2
187,071 - EX31_RS05240 0.37 -0.2
187,071 - EX31_RS05240 0.37 -1.0
187,073 + EX31_RS05240 0.37 +0.5
187,091 - EX31_RS05240 0.41 -1.0

Or see this region's nucleotide sequence