Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS04990 and EX31_RS04995 are separated by 9 nucleotides EX31_RS04995 and EX31_RS05000 are separated by 277 nucleotides
EX31_RS04990: EX31_RS04990 - rhomboid family intramembrane serine protease GlpG, at 124,672 to 125,505
_RS04990
EX31_RS04995: EX31_RS04995 - DeoR/GlpR family transcriptional regulator, at 125,515 to 126,273
_RS04995
EX31_RS05000: EX31_RS05000 - glycerol-3-phosphate dehydrogenase, at 126,551 to 128,062
_RS05000
Position (kb) 125
126
127 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 124.520 kb on + strand at 124.529 kb on - strand at 124.529 kb on - strand at 124.539 kb on - strand at 124.556 kb on - strand at 124.584 kb on + strand at 124.584 kb on + strand at 124.584 kb on + strand at 124.585 kb on - strand at 124.585 kb on - strand at 124.585 kb on - strand at 124.586 kb on + strand at 124.586 kb on + strand at 124.586 kb on + strand at 124.586 kb on + strand at 124.587 kb on - strand at 124.612 kb on + strand at 124.612 kb on + strand at 124.612 kb on + strand at 124.617 kb on + strand at 124.617 kb on + strand at 124.617 kb on + strand at 124.617 kb on + strand at 124.618 kb on - strand at 124.618 kb on - strand at 124.664 kb on + strand at 124.686 kb on + strand at 124.726 kb on + strand at 124.726 kb on + strand at 124.726 kb on + strand at 124.727 kb on - strand at 124.727 kb on - strand at 124.727 kb on - strand at 124.727 kb on - strand at 124.727 kb on - strand at 124.727 kb on - strand at 124.747 kb on - strand at 124.747 kb on - strand at 124.778 kb on + strand, within EX31_RS04990 at 124.778 kb on + strand, within EX31_RS04990 at 124.778 kb on + strand, within EX31_RS04990 at 124.778 kb on + strand, within EX31_RS04990 at 124.778 kb on + strand, within EX31_RS04990 at 124.778 kb on + strand, within EX31_RS04990 at 124.778 kb on + strand, within EX31_RS04990 at 124.778 kb on + strand, within EX31_RS04990 at 124.779 kb on - strand, within EX31_RS04990 at 124.779 kb on - strand, within EX31_RS04990 at 124.779 kb on - strand, within EX31_RS04990 at 124.779 kb on - strand, within EX31_RS04990 at 124.779 kb on - strand, within EX31_RS04990 at 124.864 kb on + strand, within EX31_RS04990 at 124.907 kb on + strand, within EX31_RS04990 at 124.907 kb on + strand, within EX31_RS04990 at 124.907 kb on + strand, within EX31_RS04990 at 124.907 kb on + strand, within EX31_RS04990 at 124.908 kb on - strand, within EX31_RS04990 at 124.999 kb on - strand, within EX31_RS04990 at 125.075 kb on + strand, within EX31_RS04990 at 125.076 kb on - strand, within EX31_RS04990 at 125.115 kb on + strand, within EX31_RS04990 at 125.131 kb on - strand, within EX31_RS04990 at 125.131 kb on - strand, within EX31_RS04990 at 125.284 kb on + strand, within EX31_RS04990 at 125.285 kb on - strand, within EX31_RS04990 at 125.285 kb on - strand, within EX31_RS04990 at 125.341 kb on + strand, within EX31_RS04990 at 125.341 kb on + strand, within EX31_RS04990 at 125.341 kb on + strand, within EX31_RS04990 at 125.341 kb on + strand, within EX31_RS04990 at 125.341 kb on + strand, within EX31_RS04990 at 125.341 kb on + strand, within EX31_RS04990 at 125.341 kb on + strand, within EX31_RS04990 at 125.341 kb on + strand, within EX31_RS04990 at 125.341 kb on + strand, within EX31_RS04990 at 125.342 kb on - strand, within EX31_RS04990 at 125.342 kb on - strand, within EX31_RS04990 at 125.342 kb on - strand, within EX31_RS04990 at 125.342 kb on - strand, within EX31_RS04990 at 125.342 kb on - strand, within EX31_RS04990 at 125.342 kb on - strand, within EX31_RS04990 at 125.342 kb on - strand, within EX31_RS04990 at 125.358 kb on - strand, within EX31_RS04990 at 125.397 kb on + strand, within EX31_RS04990 at 125.397 kb on + strand, within EX31_RS04990 at 125.397 kb on + strand, within EX31_RS04990 at 125.499 kb on + strand at 125.503 kb on + strand at 125.503 kb on + strand at 125.503 kb on + strand at 125.553 kb on - strand at 125.569 kb on + strand at 125.570 kb on - strand at 125.570 kb on - strand at 125.570 kb on - strand at 125.619 kb on + strand, within EX31_RS04995 at 125.620 kb on - strand, within EX31_RS04995 at 125.620 kb on - strand, within EX31_RS04995 at 125.655 kb on + strand, within EX31_RS04995 at 125.656 kb on - strand, within EX31_RS04995 at 125.713 kb on + strand, within EX31_RS04995 at 125.713 kb on + strand, within EX31_RS04995 at 125.713 kb on + strand, within EX31_RS04995 at 125.713 kb on + strand, within EX31_RS04995 at 125.713 kb on + strand, within EX31_RS04995 at 125.713 kb on + strand, within EX31_RS04995 at 125.714 kb on - strand, within EX31_RS04995 at 125.714 kb on - strand, within EX31_RS04995 at 125.714 kb on - strand, within EX31_RS04995 at 125.714 kb on - strand, within EX31_RS04995 at 125.714 kb on - strand, within EX31_RS04995 at 125.802 kb on + strand, within EX31_RS04995 at 125.803 kb on - strand, within EX31_RS04995 at 125.848 kb on - strand, within EX31_RS04995 at 125.853 kb on + strand, within EX31_RS04995 at 126.042 kb on + strand, within EX31_RS04995 at 126.043 kb on - strand, within EX31_RS04995 at 126.193 kb on + strand, within EX31_RS04995 at 126.193 kb on + strand, within EX31_RS04995 at 126.208 kb on - strand at 126.286 kb on + strand at 126.286 kb on + strand at 126.287 kb on - strand at 126.399 kb on + strand at 126.399 kb on + strand at 126.399 kb on + strand at 126.400 kb on - strand at 126.400 kb on - strand at 126.443 kb on + strand at 126.443 kb on + strand at 126.443 kb on + strand at 126.443 kb on + strand at 126.443 kb on + strand at 126.443 kb on + strand at 126.443 kb on + strand at 126.443 kb on + strand at 126.443 kb on + strand at 126.444 kb on - strand at 126.444 kb on - strand at 126.444 kb on - strand at 126.453 kb on + strand at 126.453 kb on + strand at 126.454 kb on - strand at 126.454 kb on - strand at 126.515 kb on + strand at 126.515 kb on + strand at 126.515 kb on + strand at 126.524 kb on + strand at 126.524 kb on + strand at 126.525 kb on - strand at 126.573 kb on + strand at 126.714 kb on - strand, within EX31_RS05000 at 126.790 kb on + strand, within EX31_RS05000 at 126.872 kb on + strand, within EX31_RS05000
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 124,520 + +0.1 124,529 - -0.3 124,529 - -0.1 124,539 - +0.3 124,556 - +0.7 124,584 + -1.0 124,584 + +1.0 124,584 + -0.2 124,585 - -0.0 124,585 - -0.1 124,585 - -0.5 124,586 + +0.1 124,586 + +0.7 124,586 + -0.6 124,586 + -0.4 124,587 - -0.8 124,612 + -0.0 124,612 + -1.2 124,612 + -0.0 124,617 + +2.2 124,617 + +1.8 124,617 + -0.0 124,617 + -1.2 124,618 - +1.0 124,618 - -1.4 124,664 + +1.6 124,686 + +0.6 124,726 + -0.1 124,726 + -0.1 124,726 + -0.8 124,727 - +1.6 124,727 - +2.1 124,727 - +0.5 124,727 - +1.3 124,727 - +1.6 124,727 - +0.4 124,747 - +1.6 124,747 - +0.4 124,778 + EX31_RS04990 0.13 +1.0 124,778 + EX31_RS04990 0.13 -0.3 124,778 + EX31_RS04990 0.13 -1.2 124,778 + EX31_RS04990 0.13 +0.3 124,778 + EX31_RS04990 0.13 +1.0 124,778 + EX31_RS04990 0.13 +1.2 124,778 + EX31_RS04990 0.13 +4.1 124,778 + EX31_RS04990 0.13 +0.6 124,779 - EX31_RS04990 0.13 +1.0 124,779 - EX31_RS04990 0.13 +1.3 124,779 - EX31_RS04990 0.13 +1.0 124,779 - EX31_RS04990 0.13 -0.3 124,779 - EX31_RS04990 0.13 +1.4 124,864 + EX31_RS04990 0.23 +0.1 124,907 + EX31_RS04990 0.28 -0.0 124,907 + EX31_RS04990 0.28 +2.1 124,907 + EX31_RS04990 0.28 -0.5 124,907 + EX31_RS04990 0.28 +0.6 124,908 - EX31_RS04990 0.28 +3.3 124,999 - EX31_RS04990 0.39 -0.1 125,075 + EX31_RS04990 0.48 +1.1 125,076 - EX31_RS04990 0.48 +0.9 125,115 + EX31_RS04990 0.53 -0.4 125,131 - EX31_RS04990 0.55 +1.4 125,131 - EX31_RS04990 0.55 -0.7 125,284 + EX31_RS04990 0.73 -2.4 125,285 - EX31_RS04990 0.74 +0.4 125,285 - EX31_RS04990 0.74 +1.1 125,341 + EX31_RS04990 0.80 -0.6 125,341 + EX31_RS04990 0.80 +1.3 125,341 + EX31_RS04990 0.80 +0.0 125,341 + EX31_RS04990 0.80 +0.1 125,341 + EX31_RS04990 0.80 -0.6 125,341 + EX31_RS04990 0.80 +0.2 125,341 + EX31_RS04990 0.80 -1.2 125,341 + EX31_RS04990 0.80 +0.4 125,341 + EX31_RS04990 0.80 -1.9 125,342 - EX31_RS04990 0.80 +0.8 125,342 - EX31_RS04990 0.80 -0.4 125,342 - EX31_RS04990 0.80 +1.3 125,342 - EX31_RS04990 0.80 +1.9 125,342 - EX31_RS04990 0.80 +1.7 125,342 - EX31_RS04990 0.80 -1.5 125,342 - EX31_RS04990 0.80 -1.5 125,358 - EX31_RS04990 0.82 -1.1 125,397 + EX31_RS04990 0.87 +0.8 125,397 + EX31_RS04990 0.87 +0.5 125,397 + EX31_RS04990 0.87 -0.0 125,499 + +0.6 125,503 + -0.9 125,503 + +1.2 125,503 + -2.4 125,553 - +1.1 125,569 + +1.5 125,570 - +0.6 125,570 - +2.4 125,570 - +0.5 125,619 + EX31_RS04995 0.14 +0.8 125,620 - EX31_RS04995 0.14 +2.4 125,620 - EX31_RS04995 0.14 +0.6 125,655 + EX31_RS04995 0.18 +1.2 125,656 - EX31_RS04995 0.19 +0.2 125,713 + EX31_RS04995 0.26 +2.7 125,713 + EX31_RS04995 0.26 +0.4 125,713 + EX31_RS04995 0.26 +2.4 125,713 + EX31_RS04995 0.26 +0.1 125,713 + EX31_RS04995 0.26 +1.6 125,713 + EX31_RS04995 0.26 +0.9 125,714 - EX31_RS04995 0.26 +1.4 125,714 - EX31_RS04995 0.26 +0.9 125,714 - EX31_RS04995 0.26 +1.5 125,714 - EX31_RS04995 0.26 +0.6 125,714 - EX31_RS04995 0.26 +0.9 125,802 + EX31_RS04995 0.38 +1.7 125,803 - EX31_RS04995 0.38 +0.9 125,848 - EX31_RS04995 0.44 -0.2 125,853 + EX31_RS04995 0.45 +1.4 126,042 + EX31_RS04995 0.69 +1.1 126,043 - EX31_RS04995 0.70 +0.7 126,193 + EX31_RS04995 0.89 +1.2 126,193 + EX31_RS04995 0.89 +0.8 126,208 - +1.6 126,286 + -2.2 126,286 + -0.4 126,287 - +0.6 126,399 + +0.6 126,399 + +1.6 126,399 + -0.6 126,400 - +0.2 126,400 - -0.6 126,443 + -3.1 126,443 + -0.9 126,443 + -0.3 126,443 + +0.6 126,443 + +0.9 126,443 + -0.4 126,443 + +1.2 126,443 + -1.0 126,443 + +2.0 126,444 - +0.1 126,444 - -0.0 126,444 - -1.9 126,453 + +0.4 126,453 + -0.8 126,454 - +1.9 126,454 - -0.3 126,515 + -0.2 126,515 + +0.4 126,515 + -2.8 126,524 + -0.9 126,524 + +0.7 126,525 - +0.6 126,573 + +2.3 126,714 - EX31_RS05000 0.11 -1.4 126,790 + EX31_RS05000 0.16 +0.8 126,872 + EX31_RS05000 0.21 +0.6
Or see this region's nucleotide sequence