Strain Fitness in Rahnella sp. WP5

Strain Fitness in Rahnella sp. WP5 around EX31_RS04940

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	D,L-Lactate (C)
				remove
114,890	+	EX31_RS04935	0.70	-0.9
114,953	+	EX31_RS04935	0.73	-1.2
115,053	-	EX31_RS04935	0.77	+1.6
115,106	-	EX31_RS04935	0.79	+0.8
115,170	+	EX31_RS04935	0.82	-0.5
115,177	+	EX31_RS04935	0.82	-1.9
115,237	+	EX31_RS04935	0.84	+2.1
115,237	+	EX31_RS04935	0.84	+0.1
115,237	+	EX31_RS04935	0.84	-1.8
115,238	-	EX31_RS04935	0.84	-0.4
115,238	-	EX31_RS04935	0.84	+0.7
115,238	-	EX31_RS04935	0.84	-0.0
115,364	+	EX31_RS04935	0.90	-0.1
115,412	+			-1.0
115,412	+			+0.6
115,412	+			+0.1
115,413	-			-0.8
115,413	-			-1.6
115,414	+			+0.6
115,414	+			-0.9
115,414	+			+0.0
115,414	+			+0.7
115,414	+			+0.6
115,414	+			-0.3
115,414	+			-0.1
115,414	+			+0.1
115,414	+			+0.6
115,415	-			+0.4
115,415	-			+0.4
115,415	-			-1.0
115,415	-			-1.2
115,415	-			-0.5
115,415	-			-0.6
115,418	+			+0.1
115,418	+			+1.1
115,419	-			+0.6
115,419	-			+0.1
115,419	-			-1.9
115,526	+			+0.4
115,526	+			+1.7
115,526	+			+2.1
115,526	+			-1.1
115,527	-			+1.0
115,527	-			-0.6
115,613	+			+0.7
115,613	+			+0.3
115,613	+			-1.0
115,613	+			-0.3
115,614	-			-1.2
115,614	-			+0.1
115,677	-			+0.1
115,680	+			-1.9
115,680	+			+0.1
115,680	+			-0.2
115,680	+			-1.4
115,680	+			-0.5
115,680	+			+2.0
115,680	+			-0.4
115,680	+			+0.5
115,680	+			+1.9
115,680	+			+0.5
115,680	+			+0.4
115,680	+			+0.7
115,680	+			+0.4
115,680	+			-0.7
115,680	+			-0.6
115,680	+			+0.4
115,680	+			-0.1
115,680	+			-2.5
115,680	+			-1.4
115,680	+			-0.2
115,680	+			+0.7
115,680	+			+1.1
115,680	+			+1.2
115,680	+			+0.2
115,680	+			-1.9
115,680	+			+0.6
115,680	+			+0.6
115,680	+			+0.1
115,680	+			-0.8
115,680	+			-1.0
115,680	+			+0.4
115,680	+			-1.8
115,680	+			+0.8
115,680	+			-0.2
115,680	+			+0.4
115,680	+			+0.3
115,680	+			+0.5
115,680	+			-3.2
115,680	+			+0.2
115,680	+			+0.3
115,680	+			-1.1
115,680	+			-0.2
115,680	+			-2.4
115,680	+			+1.4
115,680	+			+0.2
115,680	+			-0.1
115,680	+			+1.0
115,680	+			-0.1
115,680	+			+1.0
115,680	+			+1.0
115,680	+			-0.7
115,680	+			-1.4
115,680	+			+1.2
115,680	+			+1.3
115,680	+			+0.5
115,680	+			+0.6
115,680	+			-0.3
115,680	+			+0.7
115,680	+			-2.5
115,680	+			-1.8
115,680	+			-0.9
115,680	+			+0.1
115,681	-			+0.0
115,681	-			+1.2
115,681	-			+1.6
115,681	-			+1.3
115,681	-			+1.9
115,681	-			+0.8
115,681	-			+0.9
115,681	-			+0.9
115,681	-			-0.6
115,681	-			-0.1
115,681	-			-1.9
115,681	-			+0.9
115,681	-			+1.0
115,681	-			+3.1
115,681	-			-0.5
115,681	-			+0.8
115,681	-			+0.3
115,681	-			+0.4
115,681	-			+1.4
115,681	-			-0.7
115,681	-			-0.3
115,681	-			-0.2
115,681	-			+0.5
115,681	-			+1.1
115,681	-			-1.6
115,681	-			-0.8
115,681	-			-0.6
115,681	-			-0.2
115,681	-			+1.4
115,681	-			-0.3
115,681	-			+0.6
115,681	-			+0.9
115,681	-			+0.2
115,681	-			-0.4
115,681	-			-0.7
115,681	-			+1.6
115,681	-			-2.5
115,681	-			+0.6
115,681	-			+1.6
115,681	-			-1.6
115,681	-			-0.9
115,681	-			+0.1
115,681	-			-1.4
115,681	-			-0.9
115,684	+			-2.3
115,684	+			+0.0
115,684	+			-0.6
115,684	+			-0.4
115,684	+			+0.7
115,684	+			-1.9
115,684	+			-0.7
115,684	+			-0.1
115,684	+			-2.4
115,684	+			+0.2
115,684	+			-0.8
115,684	+			-2.0
115,684	+			+0.3
115,684	+			+0.6
115,684	+			-2.7
115,684	+			+0.2
115,684	+			-0.6
115,684	+			+0.6
115,684	+			+1.1
115,685	-			-1.4
115,685	-			-0.2
115,685	-			-0.5
115,685	-			-1.3
115,685	-			+1.0
115,685	-			-0.8
115,685	-			+1.0
115,685	-			-2.2
115,685	-			+1.0
115,685	-			+0.0
115,685	-			+0.3
115,685	-			-0.2
115,685	-			+1.2
115,685	-			-0.1
115,685	-			+1.9
115,685	-			-0.1
115,685	-			-2.6
115,685	-			-0.2
115,685	-			+0.8
115,685	-			-0.2
115,685	-			+0.9
115,686	+			-0.2
115,687	-			+1.2
115,687	-			-2.0
115,693	+			+0.0
115,693	+			-0.7
115,693	+			-2.4
115,693	+			+0.4
115,693	+			+0.7
115,694	-			+0.2
115,694	-			-1.3
115,769	-			-0.3
115,769	-			+2.1
115,769	-			-0.3
115,861	+			-0.7
115,882	+			+0.1
115,883	-			+0.9
115,883	-			+0.8
115,895	-			+1.2
115,897	+			-0.2
115,942	+			+0.6
115,943	-			-0.0
116,029	-	EX31_RS04940	0.21	-1.6
116,093	+	EX31_RS04940	0.31	+0.4
116,093	+	EX31_RS04940	0.31	-2.4
116,093	+	EX31_RS04940	0.31	+1.1
116,093	+	EX31_RS04940	0.31	+0.3
116,093	+	EX31_RS04940	0.31	+0.3
116,093	+	EX31_RS04940	0.31	-0.6
116,093	+	EX31_RS04940	0.31	-2.6
116,094	-	EX31_RS04940	0.31	+1.0
116,094	-	EX31_RS04940	0.31	-2.1
116,094	-	EX31_RS04940	0.31	+0.5
116,094	-	EX31_RS04940	0.31	-0.9
116,276	-	EX31_RS04940	0.57	-1.5
116,276	-	EX31_RS04940	0.57	+1.1
116,276	-	EX31_RS04940	0.57	+0.3
116,276	-	EX31_RS04940	0.57	-2.0
116,362	+	EX31_RS04940	0.70	+1.2
116,362	+	EX31_RS04940	0.70	-1.8
116,362	+	EX31_RS04940	0.70	+0.9
116,363	-	EX31_RS04940	0.70	-2.0
116,363	-	EX31_RS04940	0.70	-2.6
116,363	-	EX31_RS04940	0.70	+0.8
116,429	-	EX31_RS04940	0.79	-0.7
116,545	-			-0.0
116,545	-			-2.1
116,545	-			+2.1
116,587	+			+0.4
116,588	-			+0.1
116,588	-			+0.2
116,588	-			+0.6
116,608	+			+1.6
116,686	-	EX31_RS04945	0.14	+2.6
116,686	-	EX31_RS04945	0.14	-1.5
116,698	-	EX31_RS04945	0.15	-1.1
116,810	-	EX31_RS04945	0.28	+0.9
116,810	-	EX31_RS04945	0.28	+0.5
116,907	+	EX31_RS04945	0.39	+0.4
116,907	+	EX31_RS04945	0.39	-0.4
116,907	+	EX31_RS04945	0.39	-2.2
116,907	+	EX31_RS04945	0.39	+1.2
116,908	-	EX31_RS04945	0.40	+2.3
116,916	+	EX31_RS04945	0.41	+0.2
116,916	+	EX31_RS04945	0.41	+0.3
116,916	+	EX31_RS04945	0.41	-0.5
117,060	+	EX31_RS04945	0.57	+0.6
117,060	+	EX31_RS04945	0.57	-0.4
117,061	-	EX31_RS04945	0.57	+0.6
117,061	-	EX31_RS04945	0.57	+0.6
117,063	+	EX31_RS04945	0.58	+0.5
117,063	+	EX31_RS04945	0.58	+0.0
117,063	+	EX31_RS04945	0.58	+0.8
117,063	+	EX31_RS04945	0.58	-0.0
117,063	+	EX31_RS04945	0.58	-0.2
117,064	-	EX31_RS04945	0.58	+0.3
117,064	-	EX31_RS04945	0.58	+0.3
117,064	-	EX31_RS04945	0.58	-1.6
117,064	-	EX31_RS04945	0.58	+0.9
117,064	-	EX31_RS04945	0.58	+1.6
117,064	-	EX31_RS04945	0.58	+0.3
117,064	-	EX31_RS04945	0.58	+0.8
117,064	-	EX31_RS04945	0.58	+0.1
117,064	-	EX31_RS04945	0.58	+0.0
117,064	-	EX31_RS04945	0.58	+0.7
117,064	-	EX31_RS04945	0.58	+0.1
117,064	-	EX31_RS04945	0.58	+0.8
117,064	-	EX31_RS04945	0.58	+1.1
117,236	+	EX31_RS04945	0.78	-1.8
117,248	+	EX31_RS04945	0.79	+0.7
117,248	+	EX31_RS04945	0.79	+0.6
117,396	+			-0.6
117,396	+			-0.0
117,396	+			+1.0
117,396	+			+0.2
117,396	+			+0.3
117,396	+			-1.1
117,397	-			+0.1
117,397	-			+1.6
117,397	-			-3.0
117,401	-			-1.2
117,418	+			-0.8
117,418	+			+0.4
117,418	+			-0.7
117,419	-			-0.8
117,419	-			-0.5
117,419	-			+0.2
117,419	-			+0.1
117,439	+			+0.6
117,548	+	EX31_RS04950	0.17	+0.7
117,549	-	EX31_RS04950	0.17	+0.4
117,549	-	EX31_RS04950	0.17	-0.0
117,549	-	EX31_RS04950	0.17	-1.0
117,549	-	EX31_RS04950	0.17	+1.0
117,552	+	EX31_RS04950	0.17	+1.6
117,553	-	EX31_RS04950	0.18	-0.5
117,553	-	EX31_RS04950	0.18	-1.4

Or see this region's nucleotide sequence