Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS04175 and EX31_RS04180 overlap by 4 nucleotides EX31_RS04180 and EX31_RS04185 are separated by 52 nucleotides
EX31_RS04175: EX31_RS04175 - rhamnulokinase, at 357,997 to 359,481
_RS04175
EX31_RS04180: EX31_RS04180 - L-rhamnose isomerase, at 359,478 to 360,734
_RS04180
EX31_RS04185: EX31_RS04185 - rhamnulose-1-phosphate aldolase, at 360,787 to 361,611
_RS04185
Position (kb) 359
360
361 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 358.534 kb on + strand, within EX31_RS04175 at 358.534 kb on + strand, within EX31_RS04175 at 358.534 kb on + strand, within EX31_RS04175 at 358.534 kb on + strand, within EX31_RS04175 at 358.535 kb on - strand, within EX31_RS04175 at 358.535 kb on - strand, within EX31_RS04175 at 358.535 kb on - strand, within EX31_RS04175 at 358.638 kb on + strand, within EX31_RS04175 at 358.768 kb on + strand, within EX31_RS04175 at 358.768 kb on + strand, within EX31_RS04175 at 358.768 kb on + strand, within EX31_RS04175 at 358.822 kb on - strand, within EX31_RS04175 at 358.848 kb on + strand, within EX31_RS04175 at 358.848 kb on + strand, within EX31_RS04175 at 358.849 kb on - strand, within EX31_RS04175 at 358.849 kb on - strand, within EX31_RS04175 at 358.880 kb on - strand, within EX31_RS04175 at 358.907 kb on + strand, within EX31_RS04175 at 358.908 kb on - strand, within EX31_RS04175 at 358.952 kb on + strand, within EX31_RS04175 at 358.962 kb on - strand, within EX31_RS04175 at 358.996 kb on + strand, within EX31_RS04175 at 358.996 kb on + strand, within EX31_RS04175 at 358.996 kb on + strand, within EX31_RS04175 at 358.997 kb on - strand, within EX31_RS04175 at 358.997 kb on - strand, within EX31_RS04175 at 359.004 kb on + strand, within EX31_RS04175 at 359.025 kb on + strand, within EX31_RS04175 at 359.026 kb on - strand, within EX31_RS04175 at 359.026 kb on - strand, within EX31_RS04175 at 359.040 kb on + strand, within EX31_RS04175 at 359.041 kb on - strand, within EX31_RS04175 at 359.041 kb on - strand, within EX31_RS04175 at 359.041 kb on - strand, within EX31_RS04175 at 359.143 kb on + strand, within EX31_RS04175 at 359.395 kb on + strand at 359.395 kb on + strand at 359.396 kb on - strand at 359.396 kb on - strand at 359.396 kb on - strand at 359.396 kb on - strand at 359.406 kb on + strand at 359.406 kb on + strand at 359.407 kb on - strand at 359.407 kb on - strand at 359.477 kb on + strand at 359.489 kb on + strand at 359.537 kb on + strand at 359.585 kb on + strand at 359.585 kb on + strand at 359.651 kb on + strand, within EX31_RS04180 at 359.671 kb on - strand, within EX31_RS04180 at 359.713 kb on + strand, within EX31_RS04180 at 359.714 kb on - strand, within EX31_RS04180 at 359.770 kb on - strand, within EX31_RS04180 at 359.798 kb on + strand, within EX31_RS04180 at 359.979 kb on - strand, within EX31_RS04180 at 360.026 kb on + strand, within EX31_RS04180 at 360.027 kb on - strand, within EX31_RS04180 at 360.027 kb on - strand, within EX31_RS04180 at 360.027 kb on - strand, within EX31_RS04180 at 360.027 kb on - strand, within EX31_RS04180 at 360.186 kb on + strand, within EX31_RS04180 at 360.210 kb on + strand, within EX31_RS04180 at 360.210 kb on + strand, within EX31_RS04180 at 360.312 kb on + strand, within EX31_RS04180 at 360.312 kb on + strand, within EX31_RS04180 at 360.312 kb on + strand, within EX31_RS04180 at 360.312 kb on + strand, within EX31_RS04180 at 360.312 kb on + strand, within EX31_RS04180 at 360.312 kb on + strand, within EX31_RS04180 at 360.312 kb on + strand, within EX31_RS04180 at 360.312 kb on + strand, within EX31_RS04180 at 360.312 kb on + strand, within EX31_RS04180 at 360.312 kb on + strand, within EX31_RS04180 at 360.313 kb on - strand, within EX31_RS04180 at 360.313 kb on - strand, within EX31_RS04180 at 360.313 kb on - strand, within EX31_RS04180 at 360.313 kb on - strand, within EX31_RS04180 at 360.313 kb on - strand, within EX31_RS04180 at 360.313 kb on - strand, within EX31_RS04180 at 360.313 kb on - strand, within EX31_RS04180 at 360.313 kb on - strand, within EX31_RS04180 at 360.313 kb on - strand, within EX31_RS04180 at 360.313 kb on - strand, within EX31_RS04180 at 360.370 kb on + strand, within EX31_RS04180 at 360.370 kb on + strand, within EX31_RS04180 at 360.370 kb on + strand, within EX31_RS04180 at 360.370 kb on + strand, within EX31_RS04180 at 360.370 kb on + strand, within EX31_RS04180 at 360.370 kb on + strand, within EX31_RS04180 at 360.370 kb on + strand, within EX31_RS04180 at 360.370 kb on + strand, within EX31_RS04180 at 360.371 kb on - strand, within EX31_RS04180 at 360.371 kb on - strand, within EX31_RS04180 at 360.371 kb on - strand, within EX31_RS04180 at 360.371 kb on - strand, within EX31_RS04180 at 360.371 kb on - strand, within EX31_RS04180 at 360.371 kb on - strand, within EX31_RS04180 at 360.371 kb on - strand, within EX31_RS04180 at 360.371 kb on - strand, within EX31_RS04180 at 360.371 kb on - strand, within EX31_RS04180 at 360.371 kb on - strand, within EX31_RS04180 at 360.582 kb on + strand, within EX31_RS04180 at 360.582 kb on + strand, within EX31_RS04180 at 360.582 kb on + strand, within EX31_RS04180 at 360.582 kb on + strand, within EX31_RS04180 at 360.582 kb on + strand, within EX31_RS04180 at 360.583 kb on - strand, within EX31_RS04180 at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.648 kb on + strand at 360.649 kb on - strand at 360.649 kb on - strand at 360.649 kb on - strand at 360.649 kb on - strand at 360.649 kb on - strand at 360.649 kb on - strand at 360.649 kb on - strand at 360.649 kb on - strand at 360.649 kb on - strand at 360.649 kb on - strand at 360.649 kb on - strand at 360.649 kb on - strand at 360.649 kb on - strand at 360.649 kb on - strand at 360.649 kb on - strand at 360.649 kb on - strand at 360.649 kb on - strand at 360.649 kb on - strand at 360.649 kb on - strand at 360.649 kb on - strand at 360.649 kb on - strand at 360.649 kb on - strand at 360.706 kb on - strand at 360.732 kb on + strand at 360.732 kb on + strand at 360.733 kb on - strand at 360.768 kb on + strand at 360.768 kb on + strand at 360.797 kb on + strand at 360.797 kb on + strand at 360.798 kb on - strand at 360.798 kb on - strand at 360.798 kb on - strand at 360.801 kb on + strand at 360.801 kb on + strand at 360.801 kb on + strand at 360.801 kb on + strand at 360.802 kb on - strand at 360.802 kb on - strand at 360.802 kb on - strand at 360.802 kb on - strand at 360.843 kb on + strand at 360.843 kb on + strand at 360.844 kb on - strand at 360.844 kb on - strand at 360.844 kb on - strand at 360.844 kb on - strand at 360.844 kb on - strand at 360.844 kb on - strand at 360.844 kb on - strand at 360.919 kb on + strand, within EX31_RS04185 at 360.921 kb on + strand, within EX31_RS04185 at 360.922 kb on - strand, within EX31_RS04185 at 360.922 kb on - strand, within EX31_RS04185 at 360.991 kb on + strand, within EX31_RS04185 at 360.991 kb on + strand, within EX31_RS04185 at 360.992 kb on - strand, within EX31_RS04185 at 360.992 kb on - strand, within EX31_RS04185 at 361.027 kb on - strand, within EX31_RS04185 at 361.037 kb on + strand, within EX31_RS04185 at 361.037 kb on + strand, within EX31_RS04185 at 361.038 kb on - strand, within EX31_RS04185 at 361.170 kb on + strand, within EX31_RS04185 at 361.240 kb on + strand, within EX31_RS04185 at 361.240 kb on + strand, within EX31_RS04185 at 361.240 kb on + strand, within EX31_RS04185 at 361.240 kb on + strand, within EX31_RS04185 at 361.240 kb on + strand, within EX31_RS04185 at 361.241 kb on - strand, within EX31_RS04185 at 361.241 kb on - strand, within EX31_RS04185 at 361.241 kb on - strand, within EX31_RS04185 at 361.241 kb on - strand, within EX31_RS04185 at 361.241 kb on - strand, within EX31_RS04185 at 361.241 kb on - strand, within EX31_RS04185 at 361.241 kb on - strand, within EX31_RS04185 at 361.241 kb on - strand, within EX31_RS04185 at 361.241 kb on - strand, within EX31_RS04185 at 361.241 kb on - strand, within EX31_RS04185 at 361.334 kb on + strand, within EX31_RS04185 at 361.335 kb on - strand, within EX31_RS04185 at 361.335 kb on - strand, within EX31_RS04185 at 361.515 kb on + strand, within EX31_RS04185 at 361.515 kb on + strand, within EX31_RS04185 at 361.515 kb on + strand, within EX31_RS04185 at 361.515 kb on + strand, within EX31_RS04185 at 361.622 kb on + strand at 361.622 kb on + strand at 361.623 kb on - strand at 361.623 kb on - strand at 361.623 kb on - strand at 361.638 kb on + strand at 361.638 kb on + strand at 361.638 kb on + strand at 361.718 kb on + strand at 361.718 kb on + strand at 361.718 kb on + strand at 361.719 kb on - strand at 361.719 kb on - strand at 361.719 kb on - strand at 361.719 kb on - strand at 361.719 kb on - strand at 361.723 kb on + strand at 361.723 kb on + strand at 361.724 kb on - strand at 361.724 kb on - strand at 361.727 kb on + strand at 361.727 kb on + strand at 361.727 kb on + strand at 361.728 kb on - strand at 361.732 kb on + strand at 361.732 kb on + strand at 361.732 kb on + strand at 361.732 kb on + strand at 361.732 kb on + strand at 361.732 kb on + strand at 361.732 kb on + strand at 361.732 kb on + strand at 361.732 kb on + strand at 361.732 kb on + strand at 361.732 kb on + strand at 361.732 kb on + strand at 361.732 kb on + strand at 361.732 kb on + strand at 361.732 kb on + strand at 361.733 kb on - strand at 361.733 kb on - strand at 361.733 kb on - strand at 361.733 kb on - strand at 361.733 kb on - strand at 361.733 kb on - strand at 361.733 kb on - strand at 361.733 kb on - strand at 361.734 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 358,534 + EX31_RS04175 0.36 -0.8 358,534 + EX31_RS04175 0.36 -0.8 358,534 + EX31_RS04175 0.36 +2.6 358,534 + EX31_RS04175 0.36 +0.6 358,535 - EX31_RS04175 0.36 -1.1 358,535 - EX31_RS04175 0.36 -3.0 358,535 - EX31_RS04175 0.36 -0.5 358,638 + EX31_RS04175 0.43 +2.4 358,768 + EX31_RS04175 0.52 +0.6 358,768 + EX31_RS04175 0.52 +0.0 358,768 + EX31_RS04175 0.52 +1.2 358,822 - EX31_RS04175 0.56 -1.6 358,848 + EX31_RS04175 0.57 -0.9 358,848 + EX31_RS04175 0.57 +1.5 358,849 - EX31_RS04175 0.57 +0.4 358,849 - EX31_RS04175 0.57 -0.0 358,880 - EX31_RS04175 0.59 +0.1 358,907 + EX31_RS04175 0.61 -0.8 358,908 - EX31_RS04175 0.61 -1.1 358,952 + EX31_RS04175 0.64 -1.2 358,962 - EX31_RS04175 0.65 +0.3 358,996 + EX31_RS04175 0.67 +1.3 358,996 + EX31_RS04175 0.67 -2.0 358,996 + EX31_RS04175 0.67 -1.0 358,997 - EX31_RS04175 0.67 +0.3 358,997 - EX31_RS04175 0.67 +0.2 359,004 + EX31_RS04175 0.68 +0.6 359,025 + EX31_RS04175 0.69 -2.4 359,026 - EX31_RS04175 0.69 +0.0 359,026 - EX31_RS04175 0.69 -1.3 359,040 + EX31_RS04175 0.70 +0.7 359,041 - EX31_RS04175 0.70 -1.1 359,041 - EX31_RS04175 0.70 +1.3 359,041 - EX31_RS04175 0.70 -1.2 359,143 + EX31_RS04175 0.77 -0.8 359,395 + +0.8 359,395 + -0.6 359,396 - +0.9 359,396 - -1.3 359,396 - +1.2 359,396 - -1.5 359,406 + +0.8 359,406 + +0.7 359,407 - +1.6 359,407 - -0.3 359,477 + +1.0 359,489 + -0.1 359,537 + -0.2 359,585 + +0.3 359,585 + +0.0 359,651 + EX31_RS04180 0.14 -3.0 359,671 - EX31_RS04180 0.15 +2.2 359,713 + EX31_RS04180 0.19 +0.7 359,714 - EX31_RS04180 0.19 +0.3 359,770 - EX31_RS04180 0.23 -1.1 359,798 + EX31_RS04180 0.25 +0.2 359,979 - EX31_RS04180 0.40 -2.0 360,026 + EX31_RS04180 0.44 +1.3 360,027 - EX31_RS04180 0.44 -1.7 360,027 - EX31_RS04180 0.44 -0.5 360,027 - EX31_RS04180 0.44 -0.7 360,027 - EX31_RS04180 0.44 -0.4 360,186 + EX31_RS04180 0.56 -0.9 360,210 + EX31_RS04180 0.58 -0.1 360,210 + EX31_RS04180 0.58 +1.0 360,312 + EX31_RS04180 0.66 +0.1 360,312 + EX31_RS04180 0.66 +0.9 360,312 + EX31_RS04180 0.66 -2.8 360,312 + EX31_RS04180 0.66 +0.6 360,312 + EX31_RS04180 0.66 -1.0 360,312 + EX31_RS04180 0.66 +0.6 360,312 + EX31_RS04180 0.66 +0.2 360,312 + EX31_RS04180 0.66 -1.2 360,312 + EX31_RS04180 0.66 +0.2 360,312 + EX31_RS04180 0.66 +2.3 360,313 - EX31_RS04180 0.66 +0.2 360,313 - EX31_RS04180 0.66 -1.2 360,313 - EX31_RS04180 0.66 -0.8 360,313 - EX31_RS04180 0.66 +3.2 360,313 - EX31_RS04180 0.66 +0.7 360,313 - EX31_RS04180 0.66 +0.6 360,313 - EX31_RS04180 0.66 -0.1 360,313 - EX31_RS04180 0.66 +0.1 360,313 - EX31_RS04180 0.66 +0.7 360,313 - EX31_RS04180 0.66 -0.2 360,370 + EX31_RS04180 0.71 +1.3 360,370 + EX31_RS04180 0.71 -0.9 360,370 + EX31_RS04180 0.71 +1.2 360,370 + EX31_RS04180 0.71 +0.3 360,370 + EX31_RS04180 0.71 +1.0 360,370 + EX31_RS04180 0.71 -0.2 360,370 + EX31_RS04180 0.71 -1.8 360,370 + EX31_RS04180 0.71 +0.6 360,371 - EX31_RS04180 0.71 +0.2 360,371 - EX31_RS04180 0.71 -0.4 360,371 - EX31_RS04180 0.71 -0.3 360,371 - EX31_RS04180 0.71 +0.1 360,371 - EX31_RS04180 0.71 +0.2 360,371 - EX31_RS04180 0.71 -0.1 360,371 - EX31_RS04180 0.71 -2.4 360,371 - EX31_RS04180 0.71 +0.1 360,371 - EX31_RS04180 0.71 +0.3 360,371 - EX31_RS04180 0.71 -0.4 360,582 + EX31_RS04180 0.88 +0.3 360,582 + EX31_RS04180 0.88 -0.3 360,582 + EX31_RS04180 0.88 -1.1 360,582 + EX31_RS04180 0.88 +1.0 360,582 + EX31_RS04180 0.88 -0.0 360,583 - EX31_RS04180 0.88 -1.6 360,648 + -0.0 360,648 + +1.2 360,648 + +0.8 360,648 + -0.7 360,648 + -1.0 360,648 + +0.5 360,648 + +0.4 360,648 + -0.2 360,648 + +0.3 360,648 + -1.8 360,648 + +0.7 360,648 + -1.0 360,648 + +1.2 360,648 + +0.4 360,648 + +0.4 360,648 + -1.0 360,648 + -1.3 360,648 + +0.2 360,648 + -0.4 360,648 + -0.1 360,648 + +0.4 360,648 + -0.8 360,648 + +0.3 360,648 + +0.6 360,648 + -2.7 360,649 - -0.6 360,649 - -2.8 360,649 - +1.2 360,649 - +1.2 360,649 - +0.4 360,649 - -0.2 360,649 - -1.6 360,649 - +0.3 360,649 - -1.1 360,649 - +0.2 360,649 - -0.0 360,649 - +1.0 360,649 - -2.0 360,649 - +0.7 360,649 - -1.1 360,649 - +1.7 360,649 - -0.8 360,649 - -1.4 360,649 - +0.0 360,649 - +1.5 360,649 - -0.9 360,649 - +0.2 360,706 - -0.2 360,732 + -0.9 360,732 + -0.1 360,733 - -0.7 360,768 + -1.4 360,768 + +0.1 360,797 + -0.6 360,797 + -1.9 360,798 - -1.3 360,798 - -0.3 360,798 - -0.5 360,801 + +0.3 360,801 + +0.7 360,801 + -0.0 360,801 + -1.7 360,802 - -2.5 360,802 - +0.9 360,802 - +0.9 360,802 - +1.4 360,843 + +0.8 360,843 + +1.2 360,844 - -1.8 360,844 - -0.6 360,844 - +0.3 360,844 - +0.1 360,844 - -0.1 360,844 - -2.4 360,844 - -0.5 360,919 + EX31_RS04185 0.16 -0.3 360,921 + EX31_RS04185 0.16 +0.1 360,922 - EX31_RS04185 0.16 +0.3 360,922 - EX31_RS04185 0.16 +1.2 360,991 + EX31_RS04185 0.25 +0.3 360,991 + EX31_RS04185 0.25 -2.4 360,992 - EX31_RS04185 0.25 -0.6 360,992 - EX31_RS04185 0.25 +1.9 361,027 - EX31_RS04185 0.29 -0.4 361,037 + EX31_RS04185 0.30 -1.5 361,037 + EX31_RS04185 0.30 +0.7 361,038 - EX31_RS04185 0.30 -1.1 361,170 + EX31_RS04185 0.46 -0.6 361,240 + EX31_RS04185 0.55 -1.1 361,240 + EX31_RS04185 0.55 -0.7 361,240 + EX31_RS04185 0.55 +1.7 361,240 + EX31_RS04185 0.55 -0.1 361,240 + EX31_RS04185 0.55 -0.1 361,241 - EX31_RS04185 0.55 -1.8 361,241 - EX31_RS04185 0.55 +2.0 361,241 - EX31_RS04185 0.55 +1.2 361,241 - EX31_RS04185 0.55 +1.5 361,241 - EX31_RS04185 0.55 -3.0 361,241 - EX31_RS04185 0.55 -0.4 361,241 - EX31_RS04185 0.55 +1.8 361,241 - EX31_RS04185 0.55 -0.6 361,241 - EX31_RS04185 0.55 -0.6 361,241 - EX31_RS04185 0.55 +0.7 361,334 + EX31_RS04185 0.66 +0.5 361,335 - EX31_RS04185 0.66 -1.8 361,335 - EX31_RS04185 0.66 -2.0 361,515 + EX31_RS04185 0.88 -3.3 361,515 + EX31_RS04185 0.88 +0.3 361,515 + EX31_RS04185 0.88 +0.8 361,515 + EX31_RS04185 0.88 -1.1 361,622 + +0.2 361,622 + -0.5 361,623 - +0.2 361,623 - -0.1 361,623 - +0.7 361,638 + -0.0 361,638 + +2.8 361,638 + -2.0 361,718 + -0.0 361,718 + +1.0 361,718 + +0.3 361,719 - +0.6 361,719 - -2.4 361,719 - +0.4 361,719 - -1.1 361,719 - -0.2 361,723 + -0.3 361,723 + +1.1 361,724 - -0.3 361,724 - +0.7 361,727 + -2.9 361,727 + -1.6 361,727 + +1.5 361,728 - +0.4 361,732 + +0.8 361,732 + -1.3 361,732 + +0.2 361,732 + -0.7 361,732 + +0.5 361,732 + +2.2 361,732 + +0.2 361,732 + -0.3 361,732 + +0.4 361,732 + -1.1 361,732 + -0.7 361,732 + +1.2 361,732 + -0.5 361,732 + -1.4 361,732 + +0.2 361,733 - +0.5 361,733 - +0.9 361,733 - -0.0 361,733 - -2.3 361,733 - -2.6 361,733 - -1.4 361,733 - +0.9 361,733 - -0.4 361,734 + +1.4
Or see this region's nucleotide sequence