Strain Fitness in Rahnella sp. WP5 around EX31_RS03835

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS03830 and EX31_RS03835 are separated by 16 nucleotidesEX31_RS03835 and EX31_RS03840 are separated by 477 nucleotides EX31_RS03830: EX31_RS03830 - carbamoyl-phosphate synthase large subunit, at 275,564 to 278,788 _RS03830 EX31_RS03835: EX31_RS03835 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 278,805 to 279,956 _RS03835 EX31_RS03840: EX31_RS03840 - 4-hydroxy-tetrahydrodipicolinate reductase, at 280,434 to 281,255 _RS03840 Position (kb) 278 279 280Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 277.994 kb on - strand, within EX31_RS03830at 278.044 kb on + strand, within EX31_RS03830at 278.060 kb on - strand, within EX31_RS03830at 278.120 kb on - strand, within EX31_RS03830at 278.143 kb on - strand, within EX31_RS03830at 278.241 kb on + strand, within EX31_RS03830at 278.241 kb on + strand, within EX31_RS03830at 278.241 kb on + strand, within EX31_RS03830at 278.241 kb on + strand, within EX31_RS03830at 278.241 kb on + strand, within EX31_RS03830at 278.242 kb on - strand, within EX31_RS03830at 278.242 kb on - strand, within EX31_RS03830at 278.242 kb on - strand, within EX31_RS03830at 278.270 kb on - strand, within EX31_RS03830at 278.417 kb on - strand, within EX31_RS03830at 278.557 kb on + strandat 278.557 kb on + strandat 278.595 kb on + strandat 278.595 kb on + strandat 278.595 kb on + strandat 278.595 kb on + strandat 278.595 kb on + strandat 278.595 kb on + strandat 278.596 kb on - strandat 278.596 kb on - strandat 278.596 kb on - strandat 278.596 kb on - strandat 278.596 kb on - strandat 278.686 kb on + strandat 278.687 kb on - strandat 278.706 kb on + strandat 278.768 kb on + strandat 278.768 kb on + strandat 278.769 kb on - strandat 278.769 kb on - strandat 278.769 kb on - strandat 278.776 kb on + strandat 278.776 kb on + strandat 278.777 kb on - strandat 278.806 kb on + strandat 278.913 kb on - strandat 278.913 kb on - strandat 278.952 kb on - strand, within EX31_RS03835at 278.952 kb on - strand, within EX31_RS03835at 279.047 kb on + strand, within EX31_RS03835at 279.047 kb on + strand, within EX31_RS03835at 279.047 kb on + strand, within EX31_RS03835at 279.135 kb on + strand, within EX31_RS03835at 279.209 kb on - strand, within EX31_RS03835at 279.367 kb on + strand, within EX31_RS03835at 279.367 kb on + strand, within EX31_RS03835at 279.437 kb on + strand, within EX31_RS03835at 279.438 kb on - strand, within EX31_RS03835at 279.438 kb on - strand, within EX31_RS03835at 279.438 kb on - strand, within EX31_RS03835at 279.563 kb on + strand, within EX31_RS03835at 279.563 kb on + strand, within EX31_RS03835at 279.564 kb on - strand, within EX31_RS03835at 279.564 kb on - strand, within EX31_RS03835at 279.564 kb on - strand, within EX31_RS03835at 279.564 kb on - strand, within EX31_RS03835at 279.564 kb on - strand, within EX31_RS03835at 279.638 kb on + strand, within EX31_RS03835at 279.638 kb on + strand, within EX31_RS03835at 279.638 kb on + strand, within EX31_RS03835at 279.638 kb on + strand, within EX31_RS03835at 279.639 kb on - strand, within EX31_RS03835at 279.639 kb on - strand, within EX31_RS03835at 279.639 kb on - strand, within EX31_RS03835at 279.656 kb on - strand, within EX31_RS03835at 279.732 kb on + strand, within EX31_RS03835at 279.733 kb on - strand, within EX31_RS03835at 279.733 kb on - strand, within EX31_RS03835at 279.733 kb on - strand, within EX31_RS03835at 279.733 kb on - strand, within EX31_RS03835at 279.733 kb on - strand, within EX31_RS03835at 279.733 kb on - strand, within EX31_RS03835at 279.733 kb on - strand, within EX31_RS03835at 279.780 kb on - strand, within EX31_RS03835at 279.787 kb on + strand, within EX31_RS03835at 279.787 kb on + strand, within EX31_RS03835at 279.788 kb on - strand, within EX31_RS03835at 279.814 kb on + strand, within EX31_RS03835at 279.815 kb on - strand, within EX31_RS03835at 279.815 kb on - strand, within EX31_RS03835at 279.815 kb on - strand, within EX31_RS03835at 279.815 kb on - strand, within EX31_RS03835at 279.857 kb on + strandat 279.858 kb on - strandat 279.858 kb on - strandat 279.858 kb on - strandat 280.015 kb on + strandat 280.015 kb on + strandat 280.016 kb on - strandat 280.016 kb on - strandat 280.016 kb on - strandat 280.016 kb on - strandat 280.070 kb on + strandat 280.070 kb on + strandat 280.071 kb on - strandat 280.071 kb on - strandat 280.071 kb on - strandat 280.071 kb on - strandat 280.170 kb on + strandat 280.171 kb on - strandat 280.180 kb on + strandat 280.180 kb on + strandat 280.181 kb on - strandat 280.181 kb on - strandat 280.181 kb on - strandat 280.181 kb on - strandat 280.274 kb on + strandat 280.423 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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277,994 - EX31_RS03830 0.75 -3.6
278,044 + EX31_RS03830 0.77 -3.1
278,060 - EX31_RS03830 0.77 -2.6
278,120 - EX31_RS03830 0.79 -1.8
278,143 - EX31_RS03830 0.80 -3.5
278,241 + EX31_RS03830 0.83 -0.8
278,241 + EX31_RS03830 0.83 -2.7
278,241 + EX31_RS03830 0.83 -2.7
278,241 + EX31_RS03830 0.83 -1.6
278,241 + EX31_RS03830 0.83 -2.0
278,242 - EX31_RS03830 0.83 -3.1
278,242 - EX31_RS03830 0.83 -1.8
278,242 - EX31_RS03830 0.83 -1.4
278,270 - EX31_RS03830 0.84 -3.0
278,417 - EX31_RS03830 0.88 -3.9
278,557 + -0.4
278,557 + -2.3
278,595 + -2.8
278,595 + -3.3
278,595 + -3.2
278,595 + -3.8
278,595 + -0.8
278,595 + -3.1
278,596 - -3.0
278,596 - -2.3
278,596 - -4.4
278,596 - -3.0
278,596 - -1.6
278,686 + -2.7
278,687 - -4.2
278,706 + -2.8
278,768 + -2.0
278,768 + -1.1
278,769 - -2.9
278,769 - -0.4
278,769 - -2.5
278,776 + -3.1
278,776 + -2.4
278,777 - -3.4
278,806 + -0.4
278,913 - -3.0
278,913 - -3.2
278,952 - EX31_RS03835 0.13 -1.4
278,952 - EX31_RS03835 0.13 -1.6
279,047 + EX31_RS03835 0.21 -3.0
279,047 + EX31_RS03835 0.21 -2.0
279,047 + EX31_RS03835 0.21 -1.0
279,135 + EX31_RS03835 0.29 -0.4
279,209 - EX31_RS03835 0.35 -3.8
279,367 + EX31_RS03835 0.49 -0.8
279,367 + EX31_RS03835 0.49 -3.8
279,437 + EX31_RS03835 0.55 -0.8
279,438 - EX31_RS03835 0.55 -2.0
279,438 - EX31_RS03835 0.55 -2.7
279,438 - EX31_RS03835 0.55 -2.6
279,563 + EX31_RS03835 0.66 -3.3
279,563 + EX31_RS03835 0.66 -0.4
279,564 - EX31_RS03835 0.66 -4.5
279,564 - EX31_RS03835 0.66 -3.9
279,564 - EX31_RS03835 0.66 -3.0
279,564 - EX31_RS03835 0.66 -1.5
279,564 - EX31_RS03835 0.66 -2.4
279,638 + EX31_RS03835 0.72 -3.5
279,638 + EX31_RS03835 0.72 -1.8
279,638 + EX31_RS03835 0.72 -0.4
279,638 + EX31_RS03835 0.72 -3.4
279,639 - EX31_RS03835 0.72 -2.8
279,639 - EX31_RS03835 0.72 -1.4
279,639 - EX31_RS03835 0.72 -1.6
279,656 - EX31_RS03835 0.74 -1.8
279,732 + EX31_RS03835 0.80 -0.4
279,733 - EX31_RS03835 0.81 -3.6
279,733 - EX31_RS03835 0.81 -3.0
279,733 - EX31_RS03835 0.81 -2.5
279,733 - EX31_RS03835 0.81 -3.9
279,733 - EX31_RS03835 0.81 -2.8
279,733 - EX31_RS03835 0.81 -2.1
279,733 - EX31_RS03835 0.81 -1.6
279,780 - EX31_RS03835 0.85 +0.2
279,787 + EX31_RS03835 0.85 -2.8
279,787 + EX31_RS03835 0.85 -2.8
279,788 - EX31_RS03835 0.85 -3.1
279,814 + EX31_RS03835 0.88 -1.6
279,815 - EX31_RS03835 0.88 -1.8
279,815 - EX31_RS03835 0.88 -0.4
279,815 - EX31_RS03835 0.88 -1.1
279,815 - EX31_RS03835 0.88 +0.2
279,857 + -1.4
279,858 - -3.4
279,858 - -2.4
279,858 - -3.1
280,015 + -1.6
280,015 + -3.0
280,016 - -1.4
280,016 - +1.1
280,016 - -0.2
280,016 - -1.1
280,070 + +1.2
280,070 + -1.1
280,071 - +0.7
280,071 - +1.1
280,071 - -0.4
280,071 - +0.5
280,170 + -0.6
280,171 - -0.7
280,180 + -0.1
280,180 + -0.0
280,181 - -0.2
280,181 - -0.4
280,181 - +1.8
280,181 - +1.5
280,274 + +0.7
280,423 + -0.1

Or see this region's nucleotide sequence