Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02535 and EX31_RS02540 are separated by 430 nucleotides EX31_RS02540 and EX31_RS02545 are separated by 3 nucleotides
EX31_RS02535: EX31_RS02535 - HlyD family efflux transporter periplasmic adaptor subunit, at 538,396 to 539,646
_RS02535
EX31_RS02540: EX31_RS02540 - helix-turn-helix transcriptional regulator, at 540,077 to 540,622
_RS02540
EX31_RS02545: EX31_RS02545 - alpha/beta hydrolase, at 540,626 to 541,681
_RS02545
Position (kb) 540
541 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 539.104 kb on - strand, within EX31_RS02535 at 539.104 kb on - strand, within EX31_RS02535 at 539.107 kb on - strand, within EX31_RS02535 at 539.151 kb on - strand, within EX31_RS02535 at 539.151 kb on - strand, within EX31_RS02535 at 539.151 kb on - strand, within EX31_RS02535 at 539.210 kb on - strand, within EX31_RS02535 at 539.254 kb on - strand, within EX31_RS02535 at 539.254 kb on - strand, within EX31_RS02535 at 539.329 kb on - strand, within EX31_RS02535 at 539.345 kb on - strand, within EX31_RS02535 at 539.345 kb on - strand, within EX31_RS02535 at 539.356 kb on - strand, within EX31_RS02535 at 539.356 kb on - strand, within EX31_RS02535 at 539.356 kb on - strand, within EX31_RS02535 at 539.356 kb on - strand, within EX31_RS02535 at 539.356 kb on - strand, within EX31_RS02535 at 539.379 kb on - strand, within EX31_RS02535 at 539.379 kb on - strand, within EX31_RS02535 at 539.379 kb on - strand, within EX31_RS02535 at 539.428 kb on - strand, within EX31_RS02535 at 539.538 kb on - strand at 539.542 kb on - strand at 539.587 kb on - strand at 539.639 kb on - strand at 539.639 kb on - strand at 539.639 kb on - strand at 539.896 kb on - strand at 539.927 kb on - strand at 540.055 kb on + strand at 540.056 kb on - strand at 540.060 kb on - strand at 540.077 kb on - strand at 540.160 kb on + strand, within EX31_RS02540 at 540.161 kb on - strand, within EX31_RS02540 at 540.164 kb on + strand, within EX31_RS02540 at 540.214 kb on + strand, within EX31_RS02540 at 540.220 kb on + strand, within EX31_RS02540 at 540.416 kb on + strand, within EX31_RS02540 at 540.417 kb on - strand, within EX31_RS02540 at 540.548 kb on + strand, within EX31_RS02540 at 540.736 kb on + strand, within EX31_RS02545 at 540.761 kb on + strand, within EX31_RS02545 at 540.940 kb on - strand, within EX31_RS02545 at 540.991 kb on + strand, within EX31_RS02545 at 541.207 kb on + strand, within EX31_RS02545 at 541.208 kb on - strand, within EX31_RS02545 at 541.208 kb on - strand, within EX31_RS02545 at 541.283 kb on + strand, within EX31_RS02545 at 541.284 kb on - strand, within EX31_RS02545 at 541.284 kb on - strand, within EX31_RS02545 at 541.284 kb on - strand, within EX31_RS02545 at 541.286 kb on - strand, within EX31_RS02545 at 541.429 kb on + strand, within EX31_RS02545 at 541.470 kb on + strand, within EX31_RS02545 at 541.471 kb on - strand, within EX31_RS02545 at 541.471 kb on - strand, within EX31_RS02545 at 541.509 kb on + strand, within EX31_RS02545 at 541.510 kb on - strand, within EX31_RS02545 at 541.565 kb on + strand, within EX31_RS02545 at 541.566 kb on - strand, within EX31_RS02545 at 541.566 kb on - strand, within EX31_RS02545
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 539,104 - EX31_RS02535 0.57 -0.6 539,104 - EX31_RS02535 0.57 -1.1 539,107 - EX31_RS02535 0.57 -0.2 539,151 - EX31_RS02535 0.60 -1.0 539,151 - EX31_RS02535 0.60 -1.3 539,151 - EX31_RS02535 0.60 -1.5 539,210 - EX31_RS02535 0.65 -0.3 539,254 - EX31_RS02535 0.69 +0.7 539,254 - EX31_RS02535 0.69 -1.3 539,329 - EX31_RS02535 0.75 +0.7 539,345 - EX31_RS02535 0.76 +0.2 539,345 - EX31_RS02535 0.76 +1.0 539,356 - EX31_RS02535 0.77 +1.0 539,356 - EX31_RS02535 0.77 +0.8 539,356 - EX31_RS02535 0.77 +0.2 539,356 - EX31_RS02535 0.77 +0.2 539,356 - EX31_RS02535 0.77 +1.0 539,379 - EX31_RS02535 0.79 +0.2 539,379 - EX31_RS02535 0.79 -0.0 539,379 - EX31_RS02535 0.79 +1.7 539,428 - EX31_RS02535 0.82 +1.0 539,538 - -0.6 539,542 - -0.7 539,587 - +0.8 539,639 - +1.0 539,639 - +1.0 539,639 - -2.2 539,896 - -0.4 539,927 - +0.4 540,055 + -0.8 540,056 - -0.9 540,060 - +0.5 540,077 - -2.7 540,160 + EX31_RS02540 0.15 -0.5 540,161 - EX31_RS02540 0.15 -0.6 540,164 + EX31_RS02540 0.16 -2.1 540,214 + EX31_RS02540 0.25 -1.8 540,220 + EX31_RS02540 0.26 -0.0 540,416 + EX31_RS02540 0.62 +0.3 540,417 - EX31_RS02540 0.62 +0.5 540,548 + EX31_RS02540 0.86 +1.0 540,736 + EX31_RS02545 0.10 -1.1 540,761 + EX31_RS02545 0.13 -0.4 540,940 - EX31_RS02545 0.30 -0.6 540,991 + EX31_RS02545 0.35 -1.8 541,207 + EX31_RS02545 0.55 +1.0 541,208 - EX31_RS02545 0.55 -1.5 541,208 - EX31_RS02545 0.55 +1.1 541,283 + EX31_RS02545 0.62 +1.0 541,284 - EX31_RS02545 0.62 -1.2 541,284 - EX31_RS02545 0.62 -0.3 541,284 - EX31_RS02545 0.62 +2.1 541,286 - EX31_RS02545 0.62 -2.8 541,429 + EX31_RS02545 0.76 -2.2 541,470 + EX31_RS02545 0.80 +1.0 541,471 - EX31_RS02545 0.80 -0.1 541,471 - EX31_RS02545 0.80 -0.6 541,509 + EX31_RS02545 0.84 +1.8 541,510 - EX31_RS02545 0.84 +2.3 541,565 + EX31_RS02545 0.89 -0.3 541,566 - EX31_RS02545 0.89 -0.3 541,566 - EX31_RS02545 0.89 -0.0
Or see this region's nucleotide sequence